Wall clock time and date at job start Wed Apr 1 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54232 * 2 1 4 4 O 1.42095 * 110.54425 * 223.24586 * 2 1 3 5 5 C 1.76198 * 104.44926 * 111.62270 * 2 1 3 6 6 C 1.38425 * 119.84184 * 270.02506 * 5 2 1 7 7 C 1.37902 * 120.18256 * 179.74340 * 6 5 2 8 8 C 1.39625 * 119.86566 * 0.50584 * 7 6 5 9 9 C 1.47766 * 120.15883 * 179.74397 * 8 7 6 10 10 O 1.21563 * 120.00216 * 179.72840 * 9 8 7 11 11 N 1.34777 * 119.99501 * 359.72537 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72380 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15 23 23 C 1.39698 * 119.68947 * 359.47425 * 8 7 6 24 24 Cl 1.73600 * 120.09536 * 180.29715 * 23 8 7 25 25 C 1.38160 * 119.81467 * 0.27359 * 23 8 7 26 26 H 1.08997 * 109.46950 * 308.37996 * 1 2 3 27 27 H 1.09002 * 109.46609 * 68.38193 * 1 2 3 28 28 H 1.09002 * 109.46615 * 188.37330 * 1 2 3 29 29 H 1.07997 * 119.90772 * 0.02562 * 6 5 2 30 30 H 1.07993 * 120.06857 * 180.27469 * 7 6 5 31 31 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 32 32 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 33 33 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 34 34 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 35 35 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 36 36 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 37 37 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 38 38 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 39 39 H 1.07995 * 119.93443 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4250 0.2416 2.6488 7 6 2.7639 -0.2433 3.8945 8 6 2.9449 -1.6152 4.0809 9 6 3.3136 -2.1413 5.4116 10 8 3.4656 -3.3367 5.5719 11 7 3.4815 -1.2957 6.4476 12 6 3.8412 -1.8178 7.7683 13 6 3.9626 -0.6584 8.7593 14 6 4.3376 -1.2038 10.1387 15 6 4.4579 -0.0618 11.1147 16 1 4.2838 0.9516 10.7842 17 6 4.7901 -0.3106 12.4295 18 7 5.0026 -1.5445 12.8318 19 14 4.9385 1.1049 13.6393 20 1 4.6518 2.3843 12.9419 21 1 3.9650 0.9153 14.7447 22 1 6.3158 1.1404 14.1933 23 6 2.7701 -2.4887 3.0048 24 17 2.9848 -4.1970 3.2266 25 6 2.4254 -1.9892 1.7636 26 1 -0.3633 0.6380 0.8056 27 1 -0.3632 0.3786 -0.9554 28 1 -0.3633 -1.0168 0.1497 29 1 2.2885 1.3030 2.5030 30 1 2.8928 0.4370 4.7233 31 1 3.3599 -0.3419 6.3198 32 1 3.0689 -2.5076 8.1090 33 1 4.7944 -2.3425 7.7044 34 1 4.7348 0.0313 8.4186 35 1 3.0093 -0.1337 8.8233 36 1 3.5651 -1.8932 10.4792 37 1 5.2908 -1.7287 10.0751 38 1 5.2367 -1.7196 13.7567 39 1 2.2902 -2.6627 0.9303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149023281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:01 Heat of formation + Delta-G solvation = -113.643644 kcal Electronic energy + Delta-G solvation = -24282.116145 eV Core-core repulsion = 20342.013967 eV Total energy + Delta-G solvation = -3940.102178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46962 -39.65500 -38.18793 -37.57487 -37.01013 -36.99486 -35.27648 -33.57426 -32.39930 -32.04368 -30.25532 -28.70575 -26.03962 -24.69944 -23.87618 -22.37061 -21.70741 -20.21598 -19.39717 -18.57782 -18.38644 -17.55427 -17.16410 -16.80725 -16.76030 -16.45676 -16.32330 -15.97718 -15.65410 -15.62395 -14.89160 -14.51949 -14.41561 -14.20094 -13.90557 -13.88395 -13.77109 -13.50225 -13.16423 -13.11363 -12.83407 -12.79488 -12.77531 -12.57579 -12.39926 -12.32380 -12.20313 -11.83207 -11.68870 -11.52845 -11.20585 -10.72965 -10.69602 -10.56434 -10.19430 -10.02690 -8.19829 -6.31107 -1.04564 -0.79625 -0.11846 0.96915 1.41896 1.42233 1.42418 1.55133 1.81392 1.96434 2.32644 2.42059 2.97004 3.12180 3.14356 3.40278 3.46051 3.81946 3.94875 4.01289 4.12965 4.15995 4.20124 4.32771 4.47466 4.53690 4.59054 4.74687 4.80350 4.93060 4.94739 5.02983 5.16396 5.31731 5.36337 5.52035 5.70365 5.84192 6.21522 6.40397 6.86967 7.05376 7.38705 8.92427 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002034 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.404550 B =13763.532719 C =15064.523968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.508 3.492 3 O -0.963 6.963 4 O -0.972 6.972 5 C -0.628 4.628 6 C -0.024 4.024 7 C -0.088 4.088 8 C -0.091 4.091 9 C 0.537 3.463 10 O -0.550 6.550 11 N -0.704 5.704 12 C 0.131 3.869 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.257 1.257 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.029 4.029 24 Cl -0.043 7.043 25 C -0.030 4.030 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.415 0.585 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.072 0.928 36 H -0.008 1.008 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 6.443 -29.641 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.689 3.311 3 O -0.960 6.960 4 O -0.969 6.969 5 C -0.712 4.712 6 C -0.042 4.042 7 C -0.107 4.107 8 C -0.095 4.095 9 C 0.324 3.676 10 O -0.428 6.428 11 N -0.356 5.356 12 C 0.007 3.993 13 C -0.140 4.140 14 C -0.015 4.015 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.180 1.180 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.058 4.058 24 Cl -0.014 7.014 25 C -0.049 4.049 26 H 0.178 0.822 27 H 0.175 0.825 28 H 0.171 0.829 29 H 0.204 0.796 30 H 0.192 0.808 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.278 5.578 -29.939 32.836 hybrid contribution 0.112 -0.219 1.874 1.890 sum -12.166 5.359 -28.065 31.055 Atomic orbital electron populations 1.30049 1.18493 1.14576 1.14599 1.05117 0.80336 0.73172 0.72506 1.93571 1.79747 1.37061 1.85642 1.93566 1.79851 1.62380 1.61094 1.31172 1.15073 1.01192 1.23726 1.21422 0.91109 1.01618 0.90059 1.21826 0.96667 0.92340 0.99890 1.20160 1.01500 0.95234 0.92572 1.18524 0.77976 0.86295 0.84814 1.90880 1.51037 1.16254 1.84661 1.45868 1.69687 1.11225 1.08870 1.21296 0.99678 0.97172 0.81119 1.21607 1.02065 0.96390 0.93910 1.18952 0.94859 0.95650 0.92073 1.21709 1.46683 0.94410 0.94788 0.91368 1.26033 0.95043 0.98326 1.00872 1.70117 1.48828 1.21251 1.17420 0.85370 0.77586 0.79442 0.78452 1.18034 1.20665 1.20755 1.21292 1.02886 0.86560 0.95033 1.98432 1.95080 1.10558 1.97332 1.20995 0.93539 0.94888 0.95490 0.82211 0.82455 0.82861 0.79604 0.80803 0.74617 0.92759 0.93002 0.91179 0.90969 0.98915 0.99058 0.92867 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 1.14 10.80 113.37 1.22 2.36 16 2 S 2.51 21.45 5.79 -56.49 -0.33 21.12 16 3 O -0.96 -14.16 17.11 -127.65 -2.18 -16.34 16 4 O -0.97 -16.05 17.11 -127.65 -2.18 -18.23 16 5 C -0.63 -7.34 5.66 22.32 0.13 -7.21 16 6 C -0.02 -0.24 9.45 22.23 0.21 -0.03 16 7 C -0.09 -1.18 9.54 22.52 0.21 -0.96 16 8 C -0.09 -1.96 5.88 -20.07 -0.12 -2.08 16 9 C 0.54 15.29 7.76 86.76 0.67 15.96 16 10 O -0.55 -20.08 13.97 -3.91 -0.05 -20.14 16 11 N -0.70 -18.01 5.51 -466.03 -2.57 -20.58 16 12 C 0.13 4.38 5.67 86.38 0.49 4.87 16 13 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 14 C 0.02 1.13 4.97 29.85 0.15 1.28 16 15 C -0.54 -29.31 9.11 25.60 0.23 -29.07 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 19 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.03 -0.64 6.35 22.60 0.14 -0.50 16 24 Cl -0.04 -1.15 26.02 -2.72 -0.07 -1.22 16 25 C -0.03 -0.48 9.24 22.26 0.21 -0.27 16 26 H 0.16 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.16 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.15 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.19 0.75 7.56 -2.91 -0.02 0.73 16 30 H 0.17 1.27 6.41 -2.91 -0.02 1.25 16 31 H 0.42 7.37 6.51 -92.71 -0.60 6.77 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.17 2.16 7.55 -2.91 -0.02 2.14 16 Total: -1.00 -84.76 362.18 -0.41 -85.18 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 0.49 Total: 0.43 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.18 Total: -19.02 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.28 Total: -76.95 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -4.42 Total: -54.71 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 21.45 SS G_CDS: -0.33 Total: 21.12 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -84.76 -0.41 -85.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149023281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.466 kcal (2) G-P(sol) polarization free energy of solvation -84.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds