Wall clock time and date at job start Wed Apr 1 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 109.47142 * 2 1 4 4 C 1.46901 * 109.47325 * 240.00269 * 2 1 3 5 5 C 1.46897 * 109.47419 * 120.00039 * 2 1 3 6 6 C 1.52997 * 109.47116 * 53.73265 * 5 2 1 7 7 H 1.08995 * 109.47270 * 311.09767 * 6 5 2 8 8 C 1.50705 * 109.47037 * 71.09992 * 6 5 2 9 9 H 1.07998 * 119.99938 * 244.76110 * 8 6 5 10 10 C 1.37873 * 120.00016 * 64.75564 * 8 6 5 11 11 N 1.31519 * 120.00060 * 192.33174 * 10 8 6 12 12 Si 1.86801 * 120.00255 * 12.32909 * 10 8 6 13 13 H 1.48495 * 109.46945 * 89.87558 * 12 10 8 14 14 H 1.48499 * 109.47077 * 209.87465 * 12 10 8 15 15 H 1.48498 * 109.46876 * 329.87788 * 12 10 8 16 16 O 1.42904 * 109.47440 * 191.09375 * 6 5 2 17 17 C 1.35779 * 116.99751 * 149.99648 * 16 6 5 18 18 N 1.32149 * 119.70768 * 0.02562 * 17 16 6 19 19 C 1.31994 * 121.71511 * 179.97438 * 18 17 16 20 20 C 1.38143 * 120.92069 * 359.97438 * 19 18 17 21 21 Br 1.89097 * 120.34247 * 180.02562 * 20 19 18 22 22 C 1.38848 * 119.31155 * 0.02562 * 20 19 18 23 23 C 1.38794 * 118.43085 * 359.74784 * 22 20 19 24 24 O 1.36003 * 120.48611 * 180.24278 * 23 22 20 25 25 H 1.08999 * 109.47058 * 291.98815 * 1 2 3 26 26 H 1.09003 * 109.47563 * 51.99227 * 1 2 3 27 27 H 1.08998 * 109.47101 * 171.99032 * 1 2 3 28 28 H 1.08999 * 109.47208 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46735 * 300.00556 * 3 2 1 30 30 H 1.09000 * 109.46643 * 59.99826 * 3 2 1 31 31 H 1.09000 * 109.46977 * 309.51209 * 4 2 1 32 32 H 1.09004 * 109.47357 * 69.50669 * 4 2 1 33 33 H 1.08995 * 109.47080 * 189.50751 * 4 2 1 34 34 H 1.09003 * 109.46984 * 293.73120 * 5 2 1 35 35 H 1.09007 * 109.47286 * 173.73712 * 5 2 1 36 36 H 0.96996 * 119.99997 * 179.97438 * 11 10 8 37 37 H 1.07997 * 119.54094 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.78332 * 179.97438 * 22 20 19 39 39 H 0.96696 * 113.99944 * 270.23540 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3851 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.3242 -2.0823 1.2806 7 1 0.2470 -1.9989 1.1369 8 6 1.9075 -2.9643 0.2068 9 1 1.2779 -3.3354 -0.5883 10 6 3.2450 -3.2974 0.2395 11 7 3.8093 -3.8563 -0.8089 12 14 4.2558 -2.9549 1.7726 13 1 4.1936 -4.1293 2.6791 14 1 5.6674 -2.7005 1.3881 15 1 3.7098 -1.7624 2.4691 16 8 1.5909 -2.6536 2.5631 17 6 0.6665 -3.5162 3.0579 18 7 -0.4177 -3.7892 2.3534 19 6 -1.3413 -4.6219 2.7960 20 6 -1.2072 -5.2443 4.0220 21 35 -2.5401 -6.4349 4.6397 22 6 -0.0836 -4.9866 4.7959 23 6 0.8724 -4.1101 4.3015 24 8 1.9915 -3.8315 5.0224 25 1 -0.3633 0.3848 0.9529 26 1 -0.3634 0.6328 -0.8097 27 1 -0.3633 -1.0176 -0.1432 28 1 3.0486 1.3851 -0.0005 29 1 1.5952 1.8989 -0.8900 30 1 1.5953 1.8988 0.8900 31 1 1.4633 -1.6593 -1.2885 32 1 1.7406 -0.0900 -2.0813 33 1 3.0353 -0.8418 -1.1186 34 1 1.6899 -0.1179 2.0858 35 1 3.0430 -0.7906 1.1451 36 1 4.7503 -4.0903 -0.7860 37 1 -2.2140 -4.8194 2.1912 38 1 0.0452 -5.4598 5.7581 39 1 1.8960 -3.0785 5.6215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228954555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:12 Heat of formation + Delta-G solvation = 83.970147 kcal Electronic energy + Delta-G solvation = -23790.947804 eV Core-core repulsion = 20286.297169 eV Total energy + Delta-G solvation = -3504.650635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 345.060 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46661 -41.67951 -38.99996 -38.14714 -34.77475 -33.66527 -32.43876 -31.59689 -30.52244 -30.16244 -29.56151 -28.02010 -25.22592 -24.56807 -23.81944 -22.65980 -20.39549 -19.37272 -18.60749 -18.56183 -18.28871 -18.24180 -17.49025 -16.86864 -16.44584 -15.91959 -15.36222 -15.19345 -15.07962 -14.77504 -14.49277 -14.33249 -14.25347 -14.18853 -14.08261 -13.82430 -13.57949 -13.50873 -13.36818 -12.74894 -12.45888 -12.11899 -12.00755 -11.93341 -11.26843 -11.03117 -10.87466 -10.60397 -10.47426 -10.20491 -9.13474 -7.88853 -6.07851 -0.03831 0.09382 0.18467 0.63027 1.73436 1.83430 2.13602 2.18508 2.30251 2.34093 2.53993 2.63371 2.82177 3.03625 3.09021 3.14460 3.31224 3.37841 3.48253 3.53736 3.61420 3.64616 3.77396 3.78062 3.80175 3.95248 4.00347 4.14431 4.28058 4.32266 4.62907 4.70401 4.86521 4.89379 5.19225 5.51468 6.23138 6.56134 6.62734 6.84621 7.06616 7.65832 9.16641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.253 5.253 3 C -0.040 4.040 4 C -0.044 4.044 5 C -0.006 4.006 6 C 0.157 3.843 7 H 0.085 0.915 8 C -0.577 4.577 9 H 0.098 0.902 10 C 0.092 3.908 11 N -0.840 5.840 12 Si 0.883 3.117 13 H -0.262 1.262 14 H -0.292 1.292 15 H -0.255 1.255 16 O -0.297 6.297 17 C 0.339 3.661 18 N -0.504 5.504 19 C 0.168 3.832 20 C -0.179 4.179 21 Br -0.032 7.032 22 C -0.042 4.042 23 C 0.033 3.967 24 O -0.473 6.473 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.163 0.837 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.283 0.717 37 H 0.170 0.830 38 H 0.154 0.846 39 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 16.160 -0.107 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.088 4.912 3 C -0.182 4.182 4 C -0.184 4.184 5 C -0.128 4.128 6 C 0.103 3.897 7 H 0.103 0.897 8 C -0.612 4.612 9 H 0.115 0.885 10 C -0.121 4.121 11 N -0.471 5.471 12 Si 0.712 3.288 13 H -0.187 1.187 14 H -0.219 1.219 15 H -0.181 1.181 16 O -0.204 6.204 17 C 0.158 3.842 18 N -0.229 5.229 19 C 0.010 3.990 20 C -0.262 4.262 21 Br 0.052 6.948 22 C -0.069 4.069 23 C -0.016 4.016 24 O -0.281 6.281 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.180 0.820 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.187 0.813 38 H 0.171 0.829 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.644 15.655 -0.997 17.036 hybrid contribution 0.950 0.077 1.682 1.933 sum -5.694 15.732 0.684 16.745 Atomic orbital electron populations 1.24126 0.77515 1.09648 1.07630 1.45685 1.14675 1.14090 1.16753 1.24051 1.05509 0.80563 1.08059 1.24689 1.06847 1.03537 0.83325 1.24326 1.04673 0.98238 0.85516 1.20727 0.98751 0.88820 0.81433 0.89713 1.21037 0.95268 1.35506 1.09353 0.88481 1.25099 0.97896 0.93386 0.95751 1.69858 1.13876 1.35392 1.27950 0.86924 0.78068 0.81195 0.82624 1.18699 1.21940 1.18147 1.86419 1.41295 1.54747 1.37928 1.20391 0.86581 0.88405 0.88804 1.67499 1.02921 1.19166 1.33358 1.22520 0.96091 0.89294 0.91071 1.22620 0.98222 1.05415 0.99905 1.96777 1.49646 1.59804 1.88542 1.21687 0.90012 0.95082 1.00111 1.18371 0.90112 1.01288 0.91830 1.85013 1.31625 1.53888 1.57557 0.87217 0.86756 0.85252 0.86571 0.86475 0.87005 0.81974 0.88870 0.86659 0.87580 0.85583 0.90670 0.81341 0.82861 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.54 7.38 60.06 0.44 0.98 16 2 N -0.25 2.47 0.05 -395.62 -0.02 2.45 16 3 C -0.04 0.52 7.97 60.07 0.48 1.00 16 4 C -0.04 0.31 6.93 60.07 0.42 0.73 16 5 C -0.01 0.03 3.21 -3.83 -0.01 0.02 16 6 C 0.16 0.02 1.77 -27.88 -0.05 -0.02 16 7 H 0.09 -0.14 4.60 -51.93 -0.24 -0.38 16 8 C -0.58 -2.79 6.13 -34.44 -0.21 -3.00 16 9 H 0.10 0.69 7.37 -52.49 -0.39 0.31 16 10 C 0.09 0.75 5.00 -17.82 -0.09 0.66 16 11 N -0.84 -9.36 13.96 55.43 0.77 -8.58 16 12 Si 0.88 6.72 24.40 -169.99 -4.15 2.57 16 13 H -0.26 -2.98 7.11 56.52 0.40 -2.58 16 14 H -0.29 -2.60 7.11 56.52 0.40 -2.20 16 15 H -0.25 -1.00 4.96 56.52 0.28 -0.72 16 16 O -0.30 -1.04 5.93 -33.46 -0.20 -1.24 16 17 C 0.34 1.35 7.46 -17.00 -0.13 1.23 16 18 N -0.50 -1.57 8.64 -13.19 -0.11 -1.69 16 19 C 0.17 0.31 10.93 -17.52 -0.19 0.12 16 20 C -0.18 -0.35 6.24 -39.39 -0.25 -0.60 16 21 Br -0.03 -0.04 33.73 -68.01 -2.29 -2.34 16 22 C -0.04 -0.09 9.88 -39.15 -0.39 -0.48 16 23 C 0.03 0.12 6.75 -38.96 -0.26 -0.15 16 24 O -0.47 -1.49 13.31 -34.16 -0.45 -1.94 16 25 H 0.11 -1.36 8.07 -51.93 -0.42 -1.78 16 26 H 0.11 -1.56 8.03 -51.93 -0.42 -1.98 16 27 H 0.13 -1.18 6.09 -51.93 -0.32 -1.50 16 28 H 0.12 -1.46 8.14 -51.93 -0.42 -1.88 16 29 H 0.12 -1.72 8.02 -51.93 -0.42 -2.13 16 30 H 0.11 -1.58 8.10 -51.93 -0.42 -2.00 16 31 H 0.16 -0.58 4.71 -51.93 -0.24 -0.83 16 32 H 0.09 -0.94 8.00 -51.93 -0.42 -1.35 16 33 H 0.11 -0.54 7.62 -51.93 -0.40 -0.93 16 34 H 0.11 -0.79 8.06 -51.93 -0.42 -1.21 16 35 H 0.13 -0.40 4.60 -51.92 -0.24 -0.63 16 36 H 0.28 3.17 8.31 -40.82 -0.34 2.83 16 37 H 0.17 -0.09 8.06 -52.49 -0.42 -0.51 16 38 H 0.15 0.09 8.06 -52.48 -0.42 -0.33 16 39 H 0.39 -0.87 9.06 45.56 0.41 -0.46 16 LS Contribution 323.75 15.07 4.88 4.88 Total: 0.00 -19.44 323.75 -6.25 -25.69 By element: Atomic # 1 Polarization: -15.83 SS G_CDS: -4.44 Total: -20.27 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.24 Total: 0.47 kcal Atomic # 7 Polarization: -8.46 SS G_CDS: 0.64 Total: -7.82 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: -0.65 Total: -3.18 kcal Atomic # 14 Polarization: 6.72 SS G_CDS: -4.15 Total: 2.57 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -19.44 -6.25 -25.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228954555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.660 kcal (2) G-P(sol) polarization free energy of solvation -19.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds