Wall clock time and date at job start Wed Apr 1 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42097 * 110.54449 * 2 1 4 4 O 1.42105 * 110.54409 * 223.24581 * 2 1 3 5 5 C 1.76202 * 104.44871 * 111.62250 * 2 1 3 6 6 C 1.38284 * 119.93936 * 89.99911 * 5 2 1 7 7 C 1.38153 * 120.07503 * 180.02562 * 6 5 2 8 8 C 1.38712 * 119.95820 * 0.02562 * 7 6 5 9 9 O 1.35924 * 120.05719 * 180.02562 * 8 7 6 10 10 C 1.42892 * 117.00319 * 5.30625 * 9 8 7 11 11 H 1.09003 * 110.78060 * 38.44850 * 10 9 8 12 12 C 1.55159 * 110.72209 * 161.68884 * 10 9 8 13 13 C 1.54913 * 101.58107 * 153.86680 * 12 10 9 14 14 N 1.47422 * 104.83137 * 322.98778 * 13 12 10 15 15 C 1.36940 * 125.64769 * 204.09270 * 14 13 12 16 16 H 1.07996 * 119.99867 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99804 * 0.04749 * 15 14 13 18 18 N 1.31620 * 120.00152 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99911 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.46953 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47096 * 119.99903 * 19 17 15 22 22 H 1.48505 * 109.46907 * 239.99500 * 19 17 15 23 23 C 1.47025 * 108.70369 * 24.13249 * 14 13 12 24 24 C 1.38815 * 119.88051 * 0.27497 * 8 7 6 25 25 Cl 1.73595 * 120.03821 * 179.70940 * 24 8 7 26 26 C 1.38243 * 119.94062 * 269.98086 * 5 2 1 27 27 H 1.08993 * 109.47693 * 308.37821 * 1 2 3 28 28 H 1.09004 * 109.46715 * 68.38204 * 1 2 3 29 29 H 1.08997 * 109.47118 * 188.37416 * 1 2 3 30 30 H 1.07996 * 119.95872 * 359.97438 * 6 5 2 31 31 H 1.07997 * 120.02085 * 180.02562 * 7 6 5 32 32 H 1.09001 * 111.00200 * 271.94190 * 12 10 9 33 33 H 1.08997 * 111.00201 * 35.79092 * 12 10 9 34 34 H 1.09007 * 110.35983 * 204.15240 * 13 12 10 35 35 H 1.08994 * 110.36519 * 81.83150 * 13 12 10 36 36 H 0.96996 * 120.00317 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.87894 * 239.52171 * 23 14 13 38 38 H 1.09003 * 110.00889 * 118.43223 * 23 14 13 39 39 H 1.07999 * 119.98023 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4258 -1.9890 1.7660 7 6 2.7700 -2.4851 3.0086 8 6 2.9425 -1.6177 4.0772 9 8 3.2817 -2.1035 5.3005 10 6 3.5584 -3.5026 5.3890 11 1 4.0996 -3.8463 4.5074 12 6 4.3542 -3.8241 6.6816 13 6 3.9577 -5.3006 6.9317 14 7 2.5397 -5.3826 6.5371 15 6 1.6377 -6.3084 6.9893 16 1 0.6169 -6.2843 6.6377 17 6 2.0354 -7.2777 7.8999 18 7 3.2796 -7.3072 8.3283 19 14 0.8052 -8.5411 8.5162 20 1 -0.5164 -8.2934 7.8861 21 1 1.2757 -9.9042 8.1613 22 1 0.6785 -8.4298 9.9916 23 6 2.2545 -4.3063 5.5770 24 6 2.7631 -0.2531 3.8962 25 17 2.9706 0.8354 5.2325 26 6 2.4262 0.2387 2.6487 27 1 -0.3634 0.6380 0.8055 28 1 -0.3633 0.3786 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.2902 -2.6643 0.9342 31 1 2.9046 -3.5475 3.1479 32 1 5.4271 -3.7307 6.5133 33 1 4.0330 -3.1881 7.5065 34 1 4.0731 -5.5508 7.9864 35 1 4.5623 -5.9654 6.3148 36 1 3.5577 -7.9847 8.9643 37 1 1.4721 -3.6569 5.9697 38 1 1.9398 -4.7307 4.6235 39 1 2.2918 1.3007 2.5056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234103708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:09 Heat of formation + Delta-G solvation = -50.173086 kcal Electronic energy + Delta-G solvation = -25415.855774 eV Core-core repulsion = 21478.505885 eV Total energy + Delta-G solvation = -3937.349888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.55763 -38.30233 -37.38440 -36.53197 -36.37884 -36.18295 -32.51138 -31.22875 -30.63729 -29.82241 -29.29147 -27.60522 -24.83379 -23.34058 -23.21124 -20.47172 -20.41447 -19.37557 -18.61051 -17.65563 -17.20785 -16.58945 -16.49831 -15.75978 -15.51676 -15.29026 -14.91132 -14.60191 -14.17790 -14.04897 -13.78135 -13.57318 -13.39823 -13.12413 -12.89434 -12.62990 -12.36405 -12.28933 -12.03710 -11.84254 -11.82691 -11.51617 -11.46825 -11.24965 -11.11543 -10.90663 -10.85321 -10.62525 -10.50083 -10.16204 -9.98847 -9.75169 -9.26050 -8.79608 -8.62679 -7.01732 -5.79562 -3.22666 -0.25061 0.58776 0.82743 1.97881 2.55806 2.99127 3.03605 3.32430 3.38138 3.40604 3.62806 3.81899 4.36024 4.39333 4.40547 4.53328 4.58421 4.80986 5.00533 5.07529 5.11420 5.26643 5.30132 5.35819 5.39017 5.45488 5.55749 5.67448 5.81784 6.07249 6.17595 6.26910 6.32998 6.40204 6.45668 7.23537 7.30505 7.47591 7.68466 8.19020 9.06393 9.66585 10.28294 11.24900 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.002714 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.945408 B =10314.628847 C =11292.524627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.509 3.491 3 O -0.939 6.939 4 O -0.938 6.938 5 C -0.700 4.700 6 C 0.022 3.978 7 C -0.218 4.218 8 C 0.206 3.794 9 O -0.283 6.283 10 C 0.062 3.938 11 H 0.083 0.917 12 C -0.133 4.133 13 C 0.152 3.848 14 N -0.600 5.600 15 C -0.227 4.227 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.918 3.082 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.118 3.882 24 C -0.097 4.097 25 Cl -0.048 7.048 26 C 0.021 3.979 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.019 0.981 36 H 0.254 0.746 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 15.492 -14.275 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.688 3.312 3 O -0.937 6.937 4 O -0.935 6.935 5 C -0.787 4.787 6 C 0.003 3.997 7 C -0.238 4.238 8 C 0.157 3.843 9 O -0.193 6.193 10 C 0.006 3.994 11 H 0.101 0.899 12 C -0.172 4.172 13 C 0.028 3.972 14 N -0.327 5.327 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.008 4.008 24 C -0.126 4.126 25 Cl -0.020 7.020 26 C 0.001 3.999 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.596 15.740 -14.435 21.514 hybrid contribution -1.051 -1.086 1.051 1.841 sum -3.647 14.654 -13.384 20.178 Atomic orbital electron populations 1.30238 1.25744 1.12298 1.11796 1.04901 0.77759 0.74518 0.74003 1.93582 1.77396 1.36584 1.86092 1.93589 1.77380 1.61675 1.60859 1.30303 1.23927 1.02695 1.21798 1.20805 0.88863 0.93020 0.96979 1.21575 1.08365 1.01078 0.92775 1.19111 0.88206 0.91222 0.85792 1.86312 1.79886 1.27574 1.25565 1.23932 0.98241 0.76302 1.00887 0.89932 1.23227 0.98127 1.01244 0.94571 1.22032 0.83720 0.87498 1.03986 1.44370 1.07663 1.32093 1.48586 1.19112 0.91247 1.05076 1.20037 0.90255 1.24811 0.96723 0.99268 0.99596 1.69749 1.15248 1.36310 1.35662 0.85956 0.79897 0.80913 0.78450 1.20451 1.21600 1.21580 1.21732 0.93913 0.91123 0.94060 1.20218 1.12783 0.88590 0.90968 1.98380 1.96001 1.62350 1.45224 1.20584 0.90557 1.00044 0.88695 0.84893 0.85078 0.84818 0.83309 0.83023 0.91196 0.90513 0.86662 0.96343 0.93513 0.94608 0.95417 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.55 10.80 101.05 1.09 -1.45 16 2 S 2.51 19.81 5.80 -107.50 -0.62 19.18 16 3 O -0.94 -10.19 17.12 -57.54 -0.98 -11.18 16 4 O -0.94 -10.28 17.12 -57.54 -0.99 -11.26 16 5 C -0.70 -6.85 5.66 -39.56 -0.22 -7.07 16 6 C 0.02 0.23 9.46 -39.60 -0.37 -0.14 16 7 C -0.22 -2.71 8.77 -39.44 -0.35 -3.05 16 8 C 0.21 2.91 6.62 -39.19 -0.26 2.65 16 9 O -0.28 -4.55 9.34 -19.50 -0.18 -4.73 16 10 C 0.06 1.05 2.76 -24.89 -0.07 0.98 16 11 H 0.08 1.25 6.61 -51.93 -0.34 0.91 16 12 C -0.13 -2.42 6.81 -24.58 -0.17 -2.59 16 13 C 0.15 3.50 5.89 -2.53 -0.01 3.48 16 14 N -0.60 -14.73 3.39 -170.07 -0.58 -15.31 16 15 C -0.23 -6.10 10.27 -15.06 -0.15 -6.26 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 19 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 2.35 6.50 -3.06 -0.02 2.33 16 24 C -0.10 -1.26 6.33 -39.36 -0.25 -1.51 16 25 Cl -0.05 -0.62 28.50 -51.86 -1.48 -2.10 16 26 C 0.02 0.22 9.25 -39.57 -0.37 -0.14 16 27 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.15 1.21 7.56 -52.49 -0.40 0.81 16 31 H 0.15 1.83 5.30 -52.49 -0.28 1.55 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.12 2.99 5.87 -51.93 -0.31 2.69 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 38 H 0.03 0.53 7.41 -51.93 -0.38 0.14 16 39 H 0.15 1.33 7.56 -52.49 -0.40 0.93 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -33.90 350.22 -9.87 -43.77 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.61 Total: -1.61 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.25 Total: -13.10 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.02 Total: -40.60 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.15 Total: -27.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 19.81 SS G_CDS: -0.62 Total: 19.18 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.90 -9.87 -43.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234103708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.401 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds