Wall clock time and date at job start Wed Apr 1 2020 03:04:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21258 * 119.99685 * 2 1
4 4 C 1.47165 * 120.00304 * 180.02562 * 2 1 3
5 5 C 1.39848 * 120.17323 * 179.97438 * 4 2 1
6 6 C 1.37895 * 119.82313 * 180.02562 * 5 4 2
7 7 C 1.38396 * 120.17123 * 0.03212 * 6 5 4
8 8 S 1.76208 * 119.82483 * 179.70000 * 7 6 5
9 9 O 1.42099 * 106.40040 * 197.27880 * 8 7 6
10 10 O 1.42097 * 106.39963 * 330.20044 * 8 7 6
11 11 N 1.65597 * 107.21784 * 83.73683 * 8 7 6
12 12 C 1.38231 * 119.99937 * 62.76879 * 11 8 7
13 13 C 1.38997 * 119.99973 * 4.93135 * 12 11 8
14 14 H 1.08003 * 119.99542 * 45.48378 * 13 12 11
15 15 C 1.40816 * 120.00263 * 225.48307 * 13 12 11
16 16 N 1.30338 * 119.99722 * 9.72828 * 15 13 12
17 17 Si 1.86795 * 120.00130 * 189.73171 * 15 13 12
18 18 H 1.48500 * 109.46989 * 359.97438 * 17 15 13
19 19 H 1.48503 * 109.46948 * 119.99947 * 17 15 13
20 20 H 1.48502 * 109.47011 * 240.00050 * 17 15 13
21 21 C 1.41147 * 120.00388 * 184.93063 * 12 11 8
22 22 C 1.43196 * 120.00325 * 186.74944 * 21 12 11
23 23 N 8.66773 * 96.17158 * 139.90036 * 2 1 3
24 24 C 1.43201 * 119.99833 * 6.74602 * 21 12 11
25 25 N 8.94438 * 125.36644 * 140.63678 * 2 1 3
26 26 C 1.38406 * 120.35284 * 359.97213 * 7 6 5
27 27 C 1.37887 * 120.17009 * 0.02562 * 26 7 6
28 28 H 1.08998 * 109.46854 * 239.99827 * 1 2 3
29 29 H 1.09003 * 109.47520 * 359.97438 * 1 2 3
30 30 H 1.08998 * 109.47121 * 119.99807 * 1 2 3
31 31 H 1.08003 * 120.08731 * 0.02562 * 5 4 2
32 32 H 1.07996 * 119.91088 * 179.97438 * 6 5 4
33 33 H 0.97001 * 120.00383 * 242.76684 * 11 8 7
34 34 H 0.96997 * 120.00264 * 184.97498 * 16 15 13
35 35 H 1.08004 * 119.91626 * 179.97438 * 26 7 6
36 36 H 1.08003 * 120.08907 * 179.97438 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1132 1.0502 0.0000
4 6 2.2429 -1.2744 -0.0006
5 6 3.6414 -1.2786 -0.0011
6 6 4.3236 -2.4770 -0.0022
7 6 3.6279 -3.6734 -0.0034
8 16 4.5089 -5.1994 -0.0127
9 8 3.5805 -6.1962 -0.4171
10 8 5.7310 -4.9529 -0.6947
11 7 4.9104 -5.5432 1.5566
12 6 3.9166 -5.7548 2.4938
13 6 2.5839 -5.7806 2.0998
14 1 2.2907 -6.3394 1.2232
15 6 1.6160 -5.0783 2.8434
16 7 1.9873 -4.2546 3.7827
17 14 -0.2000 -5.3273 2.4836
18 1 -0.3558 -6.3068 1.3784
19 1 -0.8798 -5.8404 3.7001
20 1 -0.8079 -4.0321 2.0858
21 6 4.2550 -5.9446 3.8509
22 6 3.2432 -6.3066 4.7973
23 7 2.4388 -6.5917 5.5507
24 6 5.6103 -5.7752 4.2812
25 7 6.6840 -5.6392 4.6260
26 6 2.2439 -3.6776 -0.0029
27 6 1.5472 -2.4877 -0.0018
28 1 -0.3633 -0.5139 0.8900
29 1 -0.3634 1.0277 0.0005
30 1 -0.3633 -0.5138 -0.8900
31 1 4.1856 -0.3457 -0.0007
32 1 5.4035 -2.4818 -0.0030
33 1 5.8430 -5.5962 1.8182
34 1 1.3216 -3.8258 4.3429
35 1 1.7081 -4.6154 -0.0043
36 1 0.4672 -2.4926 -0.0019
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001259180784.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:23
Heat of formation + Delta-G solvation = -24.143222 kcal
Electronic energy + Delta-G solvation = -27669.944490 eV
Core-core repulsion = 23632.615847 eV
Total energy + Delta-G solvation = -4037.328643 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 345.062 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.08930 -38.26563 -37.74195 -36.92404 -35.67838 -35.06465 -34.78255 -33.52959
-32.30529 -31.13332 -29.76487 -29.57678 -27.17655 -24.35492 -22.68177 -22.18564
-20.33731 -19.81280 -18.78191 -18.15933 -17.75437 -16.97919 -16.54377 -16.26217
-15.82235 -15.37073 -15.17983 -14.91536 -14.65728 -14.13506 -13.65298 -13.57260
-13.38501 -13.19505 -12.91140 -12.62241 -12.45345 -12.43928 -12.36362 -12.23973
-12.06078 -11.92235 -11.83541 -11.68426 -11.57459 -11.35623 -11.23543 -11.06841
-10.94914 -10.81048 -10.72025 -10.29027 -9.96548 -9.69431 -9.38317 -9.00608
-7.48681 -7.31141 -5.51060 0.16797 0.61707 1.35002 2.08852 2.22781
2.75249 2.79353 2.88279 3.11145 3.51361 3.56656 3.71129 3.82754
3.92460 4.01219 4.28834 4.33030 4.47906 4.71091 4.87272 4.89564
5.13600 5.17263 5.18344 5.25732 5.40453 5.46371 5.57960 5.67118
5.68969 5.93287 6.06936 6.10227 6.18518 6.22683 6.49604 6.75833
6.88837 7.27291 7.29434 7.62415 7.90226 7.98158 8.76435 9.21568
9.49092
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.009932 B = 0.005609 C = 0.004603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2818.402671 B = 4990.778092 C = 6081.932632
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.394 3.606
3 O -0.454 6.454
4 C -0.120 4.120
5 C -0.089 4.089
6 C -0.029 4.029
7 C -0.626 4.626
8 S 2.698 3.302
9 O -0.939 6.939
10 O -0.964 6.964
11 N -1.045 6.045
12 C 0.422 3.578
13 C -0.507 4.507
14 H 0.138 0.862
15 C 0.095 3.905
16 N -0.730 5.730
17 Si 0.896 3.104
18 H -0.243 1.243
19 H -0.259 1.259
20 H -0.262 1.262
21 C -0.241 4.241
22 C 0.352 3.648
23 N -0.524 5.524
24 C 0.299 3.701
25 N -0.521 5.521
26 C 0.000 4.000
27 C -0.101 4.101
28 H 0.097 0.903
29 H 0.085 0.915
30 H 0.096 0.904
31 H 0.138 0.862
32 H 0.141 0.859
33 H 0.416 0.584
34 H 0.300 0.700
35 H 0.154 0.846
36 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.756 5.653 -10.779 13.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.259 4.259
2 C 0.272 3.728
3 O -0.330 6.330
4 C -0.122 4.122
5 C -0.108 4.108
6 C -0.049 4.049
7 C -0.713 4.713
8 S 2.790 3.210
9 O -0.929 6.929
10 O -0.954 6.954
11 N -0.789 5.789
12 C 0.315 3.685
13 C -0.539 4.539
14 H 0.155 0.845
15 C -0.136 4.136
16 N -0.350 5.350
17 Si 0.717 3.283
18 H -0.165 1.165
19 H -0.183 1.183
20 H -0.187 1.187
21 C -0.261 4.261
22 C 0.041 3.959
23 N -0.206 5.206
24 C -0.009 4.009
25 N -0.203 5.203
26 C -0.019 4.019
27 C -0.120 4.120
28 H 0.116 0.884
29 H 0.104 0.896
30 H 0.114 0.886
31 H 0.156 0.844
32 H 0.159 0.841
33 H 0.252 0.748
34 H 0.112 0.888
35 H 0.172 0.828
36 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -4.959 5.736 -9.820 12.407
hybrid contribution -0.777 0.650 0.322 1.063
sum -5.736 6.386 -9.498 12.802
Atomic orbital electron populations
1.22274 0.93432 1.05237 1.04949 1.22626 0.91894 0.87520 0.70764
1.90536 1.72286 1.34262 1.35870 1.20754 0.94829 0.94811 1.01763
1.21386 0.93173 0.98665 0.97577 1.20839 1.00226 0.90954 0.92847
1.30868 1.06650 1.19567 1.14258 1.01817 0.73248 0.74288 0.71681
1.93579 1.63780 1.55447 1.80072 1.93591 1.44661 1.86377 1.70765
1.54011 1.15949 1.79919 1.28988 1.16797 0.85885 0.81059 0.84809
1.20065 0.89827 1.28479 1.15515 0.84473 1.25901 1.02338 0.92017
0.93297 1.69449 1.38934 1.15085 1.11508 0.86359 0.80137 0.80315
0.81463 1.16544 1.18319 1.18650 1.12711 0.82448 1.40697 0.90250
1.24251 0.91235 0.89463 0.90913 1.81073 1.10344 1.17970 1.11186
1.25447 0.92191 0.90601 0.92690 1.81104 1.12883 1.18161 1.08141
1.21041 0.92024 0.99528 0.89339 1.21513 1.00316 0.91445 0.98722
0.88447 0.89610 0.88559 0.84435 0.84095 0.74816 0.88815 0.82814
0.84510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.62 8.93 36.01 0.32 -1.30 16
2 C 0.39 4.70 7.23 -30.69 -0.22 4.48 16
3 O -0.45 -6.72 17.08 5.58 0.10 -6.63 16
4 C -0.12 -1.55 5.87 -105.07 -0.62 -2.16 16
5 C -0.09 -1.19 9.60 -39.11 -0.38 -1.57 16
6 C -0.03 -0.41 9.50 -39.65 -0.38 -0.78 16
7 C -0.63 -9.33 5.55 -39.46 -0.22 -9.55 16
8 S 2.70 42.96 5.33 -107.50 -0.57 42.38 16
9 O -0.94 -16.22 14.55 -57.17 -0.83 -17.05 16
10 O -0.96 -16.29 17.44 -57.17 -1.00 -17.28 16
11 N -1.05 -17.61 5.73 32.59 0.19 -17.42 16
12 C 0.42 8.21 6.11 -83.59 -0.51 7.70 16
13 C -0.51 -9.74 4.83 -38.33 -0.19 -9.92 16
14 H 0.14 2.53 5.45 -52.48 -0.29 2.25 16
15 C 0.09 1.81 3.88 -17.21 -0.07 1.75 16
16 N -0.73 -14.92 10.82 55.59 0.60 -14.32 16
17 Si 0.90 14.83 29.18 -169.99 -4.96 9.87 16
18 H -0.24 -3.85 7.11 56.52 0.40 -3.45 16
19 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16
20 H -0.26 -3.83 7.11 56.52 0.40 -3.42 16
21 C -0.24 -5.15 5.33 -104.94 -0.56 -5.71 16
22 C 0.35 8.09 11.61 -22.40 -0.26 7.83 16
23 N -0.52 -12.56 18.55 41.93 0.78 -11.78 16
24 C 0.30 6.40 14.12 -22.48 -0.32 6.08 16
25 N -0.52 -11.49 18.54 41.83 0.78 -10.72 16
26 C 0.00 0.00 7.67 -39.65 -0.30 -0.31 16
27 C -0.10 -1.24 9.47 -39.11 -0.37 -1.61 16
28 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16
29 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16
30 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16
31 H 0.14 1.69 7.65 -52.48 -0.40 1.29 16
32 H 0.14 1.71 7.76 -52.49 -0.41 1.30 16
33 H 0.42 6.50 7.71 -34.47 -0.27 6.24 16
34 H 0.30 5.83 8.29 -40.82 -0.34 5.49 16
35 H 0.15 2.10 5.86 -52.48 -0.31 1.79 16
36 H 0.14 1.27 7.05 -52.48 -0.37 0.90 16
LS Contribution 342.29 15.07 5.16 5.16
Total: -1.00 -27.85 342.29 -6.26 -34.11
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: -2.43 Total: 8.76 kcal
Atomic # 6 Polarization: -1.01 SS G_CDS: -4.06 Total: -5.07 kcal
Atomic # 7 Polarization: -56.58 SS G_CDS: 2.34 Total: -54.24 kcal
Atomic # 8 Polarization: -39.23 SS G_CDS: -1.73 Total: -40.97 kcal
Atomic # 14 Polarization: 14.83 SS G_CDS: -4.96 Total: 9.87 kcal
Atomic # 16 Polarization: 42.96 SS G_CDS: -0.57 Total: 42.38 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -27.85 -6.26 -34.11 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001259180784.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.966 kcal
(2) G-P(sol) polarization free energy of solvation -27.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds