Wall clock time and date at job start Wed Apr 1 2020 03:04:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.21258 * 119.99685 * 2 1
4 4 C 1.47165 * 120.00304 * 180.02562 * 2 1 3
5 5 C 1.39848 * 120.17323 * 179.97438 * 4 2 1
6 6 C 1.37895 * 119.82313 * 180.02562 * 5 4 2
7 7 C 1.38396 * 120.17123 * 0.03212 * 6 5 4
8 8 S 1.76208 * 119.82483 * 179.70000 * 7 6 5
9 9 O 1.42099 * 106.40040 * 197.27880 * 8 7 6
10 10 O 1.42097 * 106.39963 * 330.20044 * 8 7 6
11 11 N 1.65597 * 107.21784 * 83.73683 * 8 7 6
12 12 C 1.38231 * 119.99937 * 62.76879 * 11 8 7
13 13 C 1.38997 * 119.99973 * 4.93135 * 12 11 8
14 14 H 1.08003 * 119.99542 * 45.48378 * 13 12 11
15 15 C 1.40816 * 120.00263 * 225.48307 * 13 12 11
16 16 N 1.30338 * 119.99722 * 9.72828 * 15 13 12
17 17 Si 1.86795 * 120.00130 * 189.73171 * 15 13 12
18 18 H 1.48500 * 109.46989 * 359.97438 * 17 15 13
19 19 H 1.48503 * 109.46948 * 119.99947 * 17 15 13
20 20 H 1.48502 * 109.47011 * 240.00050 * 17 15 13
21 21 C 1.41147 * 120.00388 * 184.93063 * 12 11 8
22 22 C 1.43196 * 120.00325 * 186.74944 * 21 12 11
23 23 N 8.66773 * 96.17158 * 139.90036 * 2 1 3
24 24 C 1.43201 * 119.99833 * 6.74602 * 21 12 11
25 25 N 8.94438 * 125.36644 * 140.63678 * 2 1 3
26 26 C 1.38406 * 120.35284 * 359.97213 * 7 6 5
27 27 C 1.37887 * 120.17009 * 0.02562 * 26 7 6
28 28 H 1.08998 * 109.46854 * 239.99827 * 1 2 3
29 29 H 1.09003 * 109.47520 * 359.97438 * 1 2 3
30 30 H 1.08998 * 109.47121 * 119.99807 * 1 2 3
31 31 H 1.08003 * 120.08731 * 0.02562 * 5 4 2
32 32 H 1.07996 * 119.91088 * 179.97438 * 6 5 4
33 33 H 0.97001 * 120.00383 * 242.76684 * 11 8 7
34 34 H 0.96997 * 120.00264 * 184.97498 * 16 15 13
35 35 H 1.08004 * 119.91626 * 179.97438 * 26 7 6
36 36 H 1.08003 * 120.08907 * 179.97438 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1132 1.0502 0.0000
4 6 2.2429 -1.2744 -0.0006
5 6 3.6414 -1.2786 -0.0011
6 6 4.3236 -2.4770 -0.0022
7 6 3.6279 -3.6734 -0.0034
8 16 4.5089 -5.1994 -0.0127
9 8 3.5805 -6.1962 -0.4171
10 8 5.7310 -4.9529 -0.6947
11 7 4.9104 -5.5432 1.5566
12 6 3.9166 -5.7548 2.4938
13 6 2.5839 -5.7806 2.0998
14 1 2.2907 -6.3394 1.2232
15 6 1.6160 -5.0783 2.8434
16 7 1.9873 -4.2546 3.7827
17 14 -0.2000 -5.3273 2.4836
18 1 -0.3558 -6.3068 1.3784
19 1 -0.8798 -5.8404 3.7001
20 1 -0.8079 -4.0321 2.0858
21 6 4.2550 -5.9446 3.8509
22 6 3.2432 -6.3066 4.7973
23 7 2.4388 -6.5917 5.5507
24 6 5.6103 -5.7752 4.2812
25 7 6.6840 -5.6392 4.6260
26 6 2.2439 -3.6776 -0.0029
27 6 1.5472 -2.4877 -0.0018
28 1 -0.3633 -0.5139 0.8900
29 1 -0.3634 1.0277 0.0005
30 1 -0.3633 -0.5138 -0.8900
31 1 4.1856 -0.3457 -0.0007
32 1 5.4035 -2.4818 -0.0030
33 1 5.8430 -5.5962 1.8182
34 1 1.3216 -3.8258 4.3429
35 1 1.7081 -4.6154 -0.0043
36 1 0.4672 -2.4926 -0.0019
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001259180784.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:23
Heat of formation + Delta-G solvation = -41.530602 kcal
Electronic energy + Delta-G solvation = -27670.698463 eV
Core-core repulsion = 23632.615847 eV
Total energy + Delta-G solvation = -4038.082616 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 345.062 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.06882 -39.40382 -39.13332 -38.30705 -37.02389 -36.73278 -36.49420 -35.06767
-33.27362 -32.17172 -31.32747 -30.36365 -28.74993 -25.35736 -23.71555 -23.69439
-21.55695 -21.00632 -20.17275 -19.63075 -18.99013 -18.41939 -17.67868 -17.55869
-16.95080 -16.77296 -16.09578 -16.06842 -15.72269 -15.15405 -15.00244 -14.88032
-14.63982 -14.37812 -14.33505 -14.01085 -13.95646 -13.75415 -13.51412 -13.40403
-13.27918 -13.26908 -13.12529 -13.08508 -13.03062 -12.84627 -12.68369 -12.59101
-12.27439 -12.05904 -11.94666 -11.78716 -11.13177 -10.90117 -10.45260 -10.04174
-8.98068 -8.89624 -7.10091 -0.93136 -0.60308 0.31697 0.70131 1.12225
1.44356 1.48203 1.61663 1.82316 1.99804 2.17214 2.29138 2.45616
2.55631 2.69148 2.83025 2.96893 3.28465 3.46755 3.70679 3.78664
3.89099 4.07500 4.22610 4.26629 4.33097 4.54852 4.57749 4.61007
4.66085 4.92299 4.97567 4.98708 5.04363 5.12521 5.27189 5.34761
5.73636 5.80516 6.09988 6.36217 6.38835 6.46063 7.07775 7.44874
8.00680
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.009932 B = 0.005609 C = 0.004603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2818.402671 B = 4990.778092 C = 6081.932632
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.395 3.605
3 O -0.491 6.491
4 C -0.126 4.126
5 C -0.100 4.100
6 C -0.039 4.039
7 C -0.636 4.636
8 S 2.709 3.291
9 O -0.952 6.952
10 O -0.975 6.975
11 N -1.043 6.043
12 C 0.428 3.572
13 C -0.505 4.505
14 H 0.148 0.852
15 C 0.073 3.927
16 N -0.751 5.751
17 Si 0.927 3.073
18 H -0.230 1.230
19 H -0.286 1.286
20 H -0.221 1.221
21 C -0.266 4.266
22 C 0.356 3.644
23 N -0.553 5.553
24 C 0.306 3.694
25 N -0.540 5.540
26 C -0.015 4.015
27 C -0.092 4.092
28 H 0.112 0.888
29 H 0.090 0.910
30 H 0.124 0.876
31 H 0.142 0.858
32 H 0.150 0.850
33 H 0.421 0.579
34 H 0.302 0.698
35 H 0.160 0.840
36 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.980 6.394 -12.197 15.916
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.255 4.255
2 C 0.276 3.724
3 O -0.369 6.369
4 C -0.127 4.127
5 C -0.119 4.119
6 C -0.058 4.058
7 C -0.726 4.726
8 S 2.804 3.196
9 O -0.942 6.942
10 O -0.965 6.965
11 N -0.785 5.785
12 C 0.319 3.681
13 C -0.536 4.536
14 H 0.165 0.835
15 C -0.156 4.156
16 N -0.371 5.371
17 Si 0.745 3.255
18 H -0.152 1.152
19 H -0.212 1.212
20 H -0.143 1.143
21 C -0.286 4.286
22 C 0.047 3.953
23 N -0.235 5.235
24 C -0.001 4.001
25 N -0.223 5.223
26 C -0.034 4.034
27 C -0.111 4.111
28 H 0.131 0.869
29 H 0.109 0.891
30 H 0.143 0.857
31 H 0.160 0.840
32 H 0.168 0.832
33 H 0.257 0.743
34 H 0.114 0.886
35 H 0.177 0.823
36 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -7.148 6.457 -11.257 14.815
hybrid contribution -0.114 0.469 0.689 0.841
sum -7.261 6.926 -10.568 14.573
Atomic orbital electron populations
1.22343 0.89850 1.06391 1.06867 1.23165 0.93711 0.86356 0.69207
1.90534 1.73368 1.35231 1.37777 1.21070 0.94743 0.95894 1.00999
1.21574 0.94044 0.98649 0.97672 1.21003 1.00901 0.90919 0.92991
1.30625 1.07230 1.18707 1.16048 1.01333 0.72886 0.74441 0.70954
1.93551 1.63962 1.56582 1.80099 1.93574 1.45507 1.86675 1.70777
1.53957 1.15908 1.79628 1.29008 1.16833 0.86579 0.80240 0.84487
1.20356 0.89817 1.27807 1.15613 0.83518 1.26516 1.05096 0.91326
0.92668 1.69496 1.40059 1.15543 1.11971 0.85923 0.76384 0.82540
0.80615 1.15186 1.21192 1.14319 1.12772 0.82017 1.42933 0.90900
1.24531 0.91133 0.88922 0.90723 1.81055 1.11149 1.19540 1.11770
1.25467 0.92134 0.90161 0.92311 1.81096 1.13314 1.19317 1.08532
1.21271 0.91753 1.00641 0.89728 1.21877 1.02110 0.90192 0.96902
0.86921 0.89092 0.85748 0.84028 0.83219 0.74304 0.88606 0.82282
0.80757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.34 8.93 71.24 0.64 -1.71 16
2 C 0.40 8.41 7.23 28.03 0.20 8.62 16
3 O -0.49 -13.93 17.08 -2.96 -0.05 -13.98 16
4 C -0.13 -2.92 5.87 -20.15 -0.12 -3.04 16
5 C -0.10 -2.58 9.60 22.58 0.22 -2.36 16
6 C -0.04 -1.04 9.50 22.23 0.21 -0.83 16
7 C -0.64 -18.06 5.55 22.35 0.12 -17.94 16
8 S 2.71 83.91 5.33 -56.49 -0.30 83.61 16
9 O -0.95 -31.68 14.55 -128.00 -1.86 -33.54 16
10 O -0.97 -32.39 17.44 -128.00 -2.23 -34.62 16
11 N -1.04 -34.67 5.73 -50.80 -0.29 -34.96 16
12 C 0.43 16.37 6.11 39.03 0.24 16.61 16
13 C -0.50 -18.64 4.83 23.08 0.11 -18.53 16
14 H 0.15 5.13 5.45 -2.91 -0.02 5.11 16
15 C 0.07 2.64 3.88 85.55 0.33 2.97 16
16 N -0.75 -29.78 10.82 21.97 0.24 -29.55 16
17 Si 0.93 27.47 29.18 68.60 2.00 29.48 16
18 H -0.23 -6.33 7.11 99.48 0.71 -5.62 16
19 H -0.29 -9.83 7.11 99.48 0.71 -9.12 16
20 H -0.22 -5.12 7.11 99.48 0.71 -4.41 16
21 C -0.27 -11.35 5.33 -20.07 -0.11 -11.46 16
22 C 0.36 16.41 11.61 88.30 1.02 17.43 16
23 N -0.55 -26.56 18.55 19.03 0.35 -26.21 16
24 C 0.31 13.19 14.12 88.33 1.25 14.44 16
25 N -0.54 -23.94 18.54 19.00 0.35 -23.58 16
26 C -0.01 -0.38 7.67 22.23 0.17 -0.21 16
27 C -0.09 -1.93 9.47 22.58 0.21 -1.72 16
28 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16
29 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16
30 H 0.12 0.82 8.09 -2.39 -0.02 0.80 16
31 H 0.14 3.42 7.65 -2.91 -0.02 3.40 16
32 H 0.15 3.58 7.76 -2.91 -0.02 3.56 16
33 H 0.42 13.14 7.71 -96.74 -0.75 12.39 16
34 H 0.30 11.40 8.29 -92.71 -0.77 10.64 16
35 H 0.16 3.86 5.86 -2.91 -0.02 3.84 16
36 H 0.18 2.23 7.05 -2.91 -0.02 2.21 16
Total: -1.00 -59.38 342.29 3.16 -56.22
By element:
Atomic # 1 Polarization: 24.39 SS G_CDS: 0.45 Total: 24.84 kcal
Atomic # 6 Polarization: -2.21 SS G_CDS: 4.50 Total: 2.29 kcal
Atomic # 7 Polarization: -114.95 SS G_CDS: 0.65 Total: -114.30 kcal
Atomic # 8 Polarization: -78.00 SS G_CDS: -4.14 Total: -82.14 kcal
Atomic # 14 Polarization: 27.47 SS G_CDS: 2.00 Total: 29.48 kcal
Atomic # 16 Polarization: 83.91 SS G_CDS: -0.30 Total: 83.61 kcal
Total: -59.38 3.16 -56.22 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001259180784.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.691 kcal
(2) G-P(sol) polarization free energy of solvation -59.382 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds