Wall clock time and date at job start Wed Apr 1 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00012 * 2 1 4 4 C 1.53004 * 109.47198 * 270.00064 * 3 2 1 5 5 N 1.46499 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21643 * 120.00232 * 359.72100 * 6 5 4 8 8 C 1.47183 * 119.99573 * 179.72413 * 6 5 4 9 9 C 1.35098 * 122.48485 * 179.73713 * 8 6 5 10 10 S 1.76184 * 108.21668 * 179.87844 * 9 8 6 11 11 C 1.76053 * 90.16016 * 0.31582 * 10 9 8 12 12 O 1.35492 * 125.18128 * 179.83554 * 11 10 9 13 13 N 1.29248 * 109.63898 * 359.81348 * 11 10 9 14 14 C 1.34773 * 119.99855 * 180.02562 * 2 1 3 15 15 O 1.21287 * 119.99643 * 179.97438 * 14 2 1 16 16 C 1.50700 * 120.00245 * 359.97438 * 14 2 1 17 17 S 1.81000 * 109.47134 * 179.97438 * 16 14 2 18 18 C 1.76200 * 99.99948 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99825 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99706 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47302 * 120.00082 * 22 20 18 25 25 H 1.48501 * 109.47431 * 239.99966 * 22 20 18 26 26 H 1.08995 * 109.46852 * 89.99905 * 1 2 3 27 27 H 1.09000 * 109.46736 * 210.00168 * 1 2 3 28 28 H 1.08993 * 109.46974 * 329.99777 * 1 2 3 29 29 H 1.08995 * 109.47424 * 150.00425 * 3 2 1 30 30 H 1.09006 * 109.46868 * 29.99976 * 3 2 1 31 31 H 1.09009 * 109.46730 * 59.99787 * 4 3 2 32 32 H 1.08998 * 109.46846 * 300.00332 * 4 3 2 33 33 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 34 34 H 1.08000 * 125.88557 * 359.95225 * 9 8 6 35 35 H 0.96701 * 114.00224 * 269.98038 * 12 11 10 36 36 H 1.08996 * 109.47045 * 299.99944 * 16 14 2 37 37 H 1.08998 * 109.47351 * 60.00086 * 16 14 2 38 38 H 0.97004 * 119.99709 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5164 3.5659 -2.6098 7 8 3.2126 3.0389 -3.6632 8 6 4.2465 4.8439 -2.6097 9 6 4.6086 5.4727 -3.7493 10 16 5.4516 6.9575 -3.3150 11 6 5.2428 6.5826 -1.6076 12 8 5.6832 7.3487 -0.5806 13 7 4.6050 5.4654 -1.4831 14 6 2.1389 -1.1672 -0.0005 15 8 3.3518 -1.1671 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 16 2.5616 -3.8480 -0.0020 18 6 1.4416 -5.2082 -0.0010 19 1 0.3763 -5.0305 -0.0002 20 6 1.9283 -6.5081 -0.0023 21 7 3.2266 -6.7246 -0.0038 22 14 0.7409 -7.9501 -0.0019 23 1 -0.6546 -7.4422 -0.0008 24 1 0.9653 -8.7765 -1.2151 25 1 0.9678 -8.7780 1.2098 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 3.1500 1.1384 0.5137 30 1 1.6084 2.0284 0.5139 31 1 1.5000 1.8407 -1.9563 32 1 3.0416 0.9507 -1.9563 33 1 3.4264 3.3998 -0.6025 34 1 4.4138 5.1255 -4.7533 35 1 6.5782 7.1331 -0.2845 36 1 0.7591 -2.5302 0.8897 37 1 0.7584 -2.5299 -0.8903 38 1 3.5668 -7.6331 -0.0051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296199113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:27 Heat of formation + Delta-G solvation = -51.885996 kcal Electronic energy + Delta-G solvation = -23866.569519 eV Core-core repulsion = 19963.481811 eV Total energy + Delta-G solvation = -3903.087708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86291 -39.66935 -39.17093 -37.62499 -36.01016 -34.64473 -32.43013 -30.93149 -30.42363 -28.48141 -26.74125 -25.70665 -25.39817 -23.49433 -22.31553 -20.45618 -19.96725 -19.20066 -18.39650 -17.69442 -17.10980 -16.72376 -16.57562 -16.19190 -15.68803 -15.41678 -15.22884 -14.87636 -14.80504 -14.28085 -14.16570 -13.88742 -13.39811 -13.24542 -12.96064 -12.59156 -12.55032 -12.44331 -12.40797 -12.28763 -11.84598 -11.45116 -11.07071 -11.01995 -10.75716 -10.62155 -10.29072 -10.17858 -9.80219 -9.51947 -9.43908 -9.23984 -9.07477 -8.67503 -8.22817 -6.50495 -6.21878 -3.92468 -0.15518 0.37385 0.88352 1.38198 2.57361 2.82371 2.98237 2.99456 3.16126 3.21719 3.29026 3.33468 3.62939 4.14090 4.19942 4.63621 4.64626 4.68685 4.79342 5.06909 5.07399 5.13451 5.17895 5.28763 5.41461 5.54922 5.67247 5.77721 5.83580 5.89433 6.07587 6.12338 6.44540 6.54603 6.73161 7.22397 7.43252 7.59920 7.86100 8.35298 8.48685 9.23589 10.85612 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.026394 B = 0.001704 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.590525 B =16424.813021 C =16577.420849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.109 3.891 4 C 0.102 3.898 5 N -0.706 5.706 6 C 0.593 3.407 7 O -0.527 6.527 8 C 0.025 3.975 9 C -0.164 4.164 10 S 0.110 5.890 11 C 0.258 3.742 12 O -0.430 6.430 13 N -0.462 5.462 14 C 0.533 3.467 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.410 0.590 34 H 0.197 0.803 35 H 0.411 0.589 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 30.560 -2.858 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.358 5.358 6 C 0.375 3.625 7 O -0.404 6.404 8 C -0.106 4.106 9 C -0.305 4.305 10 S 0.357 5.643 11 C -0.062 4.062 12 O -0.238 6.238 13 N -0.188 5.188 14 C 0.321 3.679 15 O -0.385 6.385 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.214 0.786 35 H 0.270 0.730 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.365 30.952 -3.594 31.249 hybrid contribution -2.050 -1.528 0.514 2.608 sum 0.315 29.424 -3.080 29.587 Atomic orbital electron populations 1.21831 0.79188 1.03340 1.02032 1.47743 1.06999 1.05126 1.76013 1.21451 0.99050 0.85778 0.95262 1.21866 0.97047 0.84846 0.98536 1.45631 1.57513 1.23859 1.08767 1.16980 0.78787 0.82446 0.84248 1.90872 1.54526 1.63875 1.31099 1.19948 1.05300 0.98421 0.86980 1.27198 1.02790 0.96096 1.04425 1.85424 1.53327 1.21323 1.04193 1.24991 1.00090 0.90940 0.90219 1.84866 1.37817 1.54044 1.47034 1.66722 1.13734 1.07549 1.30823 1.20425 0.87979 0.84569 0.74901 1.90709 1.13701 1.86717 1.47351 1.23558 1.04588 0.97039 1.04864 1.85413 1.08042 0.93375 1.96706 1.22898 0.94338 0.92167 1.58858 0.90849 1.25000 0.95685 0.98407 0.94545 1.70029 1.11736 1.21566 1.46915 0.86110 0.80341 0.81105 0.77894 1.19603 1.20570 1.20575 0.92547 0.90356 0.91248 0.89048 0.90093 0.90964 0.90214 0.75427 0.78556 0.73002 0.89116 0.89098 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.29 59.85 0.62 1.39 16 2 N -0.62 -8.39 2.87 -181.57 -0.52 -8.92 16 3 C 0.11 1.22 5.56 -4.04 -0.02 1.20 16 4 C 0.10 1.23 6.00 -4.04 -0.02 1.20 16 5 N -0.71 -7.71 5.55 -61.45 -0.34 -8.05 16 6 C 0.59 7.33 7.79 -12.63 -0.10 7.23 16 7 O -0.53 -8.13 16.67 5.24 0.09 -8.04 16 8 C 0.03 0.25 6.67 -84.60 -0.56 -0.31 16 9 C -0.16 -1.29 10.84 29.62 0.32 -0.97 16 10 S 0.11 0.62 23.42 -107.50 -2.52 -1.90 16 11 C 0.26 1.82 8.88 51.68 0.46 2.28 16 12 O -0.43 -2.13 13.64 -18.17 -0.25 -2.38 16 13 N -0.46 -4.26 10.01 -11.34 -0.11 -4.38 16 14 C 0.53 9.95 7.69 -10.99 -0.08 9.87 16 15 O -0.51 -11.48 15.44 5.55 0.09 -11.40 16 16 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 28 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 29 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 30 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 31 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.41 3.73 7.95 -40.82 -0.32 3.41 16 34 H 0.20 1.32 8.01 -52.49 -0.42 0.90 16 35 H 0.41 -0.09 9.06 45.56 0.41 0.32 16 36 H 0.09 1.67 7.40 -51.92 -0.38 1.28 16 37 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -38.30 366.41 -7.07 -45.36 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.49 Total: 1.01 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 0.97 Total: 6.12 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.24 Total: -46.80 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -4.73 Total: -5.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.30 -7.07 -45.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296199113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.522 kcal (2) G-P(sol) polarization free energy of solvation -38.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds