Wall clock time and date at job start Wed Apr 1 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46977 * 2 1 4 4 O 1.42903 * 109.47010 * 119.99533 * 2 1 3 5 5 C 1.52996 * 109.47252 * 239.99738 * 2 1 3 6 6 N 1.46497 * 115.55285 * 304.73919 * 5 2 1 7 7 S 1.65600 * 120.00156 * 85.68533 * 6 5 2 8 8 O 1.42095 * 106.40247 * 340.29801 * 7 6 5 9 9 O 1.42104 * 106.40150 * 207.38260 * 7 6 5 10 10 C 1.76198 * 107.22016 * 93.84362 * 7 6 5 11 11 C 1.38635 * 119.75429 * 83.92159 * 10 7 6 12 12 C 1.37607 * 120.25632 * 180.30097 * 11 10 7 13 13 C 1.40739 * 119.76998 * 359.45337 * 12 11 10 14 14 C 1.41405 * 120.23657 * 180.25317 * 13 12 11 15 15 H 1.08000 * 120.00091 * 208.43813 * 14 13 12 16 16 C 1.39944 * 119.99672 * 28.42419 * 14 13 12 17 17 N 1.30825 * 120.00498 * 9.37528 * 16 14 13 18 18 Si 1.86806 * 119.99909 * 189.36691 * 16 14 13 19 19 H 1.48507 * 109.46677 * 90.00269 * 18 16 14 20 20 H 1.48492 * 109.47347 * 210.00653 * 18 16 14 21 21 H 1.48497 * 109.46972 * 330.00908 * 18 16 14 22 22 C 1.40670 * 119.53078 * 0.27107 * 13 12 11 23 23 C 1.37758 * 119.72844 * 0.02562 * 22 13 12 24 24 Cl 1.73607 * 119.88810 * 179.97438 * 23 22 13 25 25 C 1.53007 * 117.49840 * 90.40486 * 5 2 1 26 26 C 1.52998 * 117.49712 * 159.06427 * 5 2 1 27 27 H 1.09001 * 109.47532 * 171.23732 * 1 2 3 28 28 H 1.08996 * 109.47496 * 291.23910 * 1 2 3 29 29 H 1.09003 * 109.47177 * 51.24007 * 1 2 3 30 30 H 0.96702 * 113.99633 * 60.00226 * 4 2 1 31 31 H 0.97008 * 119.99818 * 265.69103 * 6 5 2 32 32 H 1.07993 * 119.87472 * 0.03257 * 11 10 7 33 33 H 1.07997 * 120.11374 * 179.72029 * 12 11 10 34 34 H 0.96992 * 120.00657 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.13587 * 180.02562 * 22 13 12 36 36 H 1.08994 * 117.49688 * 215.00462 * 25 5 2 37 37 H 1.09003 * 117.49537 * 0.02681 * 25 5 2 38 38 H 1.08996 * 117.50147 * 359.97438 * 26 5 2 39 39 H 1.09008 * 117.49652 * 144.97651 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 1.5406 -2.0853 -1.4394 7 16 0.0929 -2.3381 -2.2028 8 8 -0.6177 -1.1096 -2.1325 9 8 -0.4198 -3.5625 -1.6955 10 6 0.4432 -2.6136 -3.9074 11 6 0.7992 -3.8816 -4.3405 12 6 1.0809 -4.1070 -5.6684 13 6 0.9955 -3.0473 -6.5906 14 6 1.2777 -3.2691 -7.9583 15 1 1.6605 -2.4642 -8.5682 16 6 1.0612 -4.5318 -8.5216 17 7 0.4301 -5.4528 -7.8397 18 14 1.6732 -4.9021 -10.2473 19 1 3.0539 -5.4445 -10.1770 20 1 0.7802 -5.9024 -10.8852 21 1 1.6723 -3.6537 -11.0513 22 6 0.6278 -1.7658 -6.1420 23 6 0.3561 -1.5612 -4.8071 24 17 -0.0974 0.0189 -4.2488 25 6 2.2845 0.1226 -2.5018 26 6 3.4705 -0.4231 -1.7025 27 1 -0.3634 -1.0156 -0.1566 28 1 -0.3634 0.3723 0.9578 29 1 -0.3634 0.6434 -0.8014 30 1 1.7209 -1.5952 1.2330 31 1 2.0579 -2.8404 -1.1182 32 1 0.8599 -4.6946 -3.6323 33 1 1.3624 -5.0947 -6.0025 34 1 0.2797 -6.3278 -8.2302 35 1 0.5589 -0.9456 -6.8413 36 1 2.0738 -0.3372 -3.4673 37 1 2.0825 1.1917 -2.4358 38 1 4.0481 0.2873 -1.1111 39 1 4.0402 -1.2419 -2.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364015516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:03 Heat of formation + Delta-G solvation = -77.953561 kcal Electronic energy + Delta-G solvation = -26912.795327 eV Core-core repulsion = 22974.240786 eV Total energy + Delta-G solvation = -3938.554540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.11015 -37.91610 -36.52973 -35.79290 -35.60972 -35.16818 -34.04298 -31.89114 -30.54484 -30.14844 -29.37926 -26.05388 -23.76253 -22.42801 -21.71996 -21.46410 -20.58052 -18.76120 -17.86110 -17.35067 -17.13188 -16.50083 -15.94582 -15.71732 -14.99146 -14.70617 -14.54248 -14.34071 -13.90811 -13.56407 -13.43147 -12.86008 -12.70057 -12.54049 -12.22144 -11.97770 -11.81329 -11.77263 -11.64595 -11.47725 -11.32519 -11.31232 -11.15597 -10.96187 -10.90407 -10.54786 -10.42043 -10.25856 -10.22913 -10.02090 -9.78154 -9.65077 -9.20800 -9.04433 -8.15055 -7.72282 -7.22210 -4.99868 1.13176 1.99373 2.56143 2.81165 2.82018 2.86346 2.96056 3.55455 3.59556 3.68514 4.10731 4.43797 4.52699 4.54081 4.88653 4.97584 5.04171 5.15864 5.33175 5.46407 5.55023 5.74852 5.85174 5.95322 6.04919 6.11492 6.26922 6.35790 6.41068 6.50996 6.59979 6.63420 6.71989 6.93680 7.08031 7.24814 7.36489 7.53639 7.62451 7.71339 8.12060 8.31504 8.38166 9.66791 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.003695 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.579914 B = 7575.219380 C = 7789.319965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.134 3.866 3 H 0.107 0.893 4 O -0.562 6.562 5 C 0.077 3.923 6 N -1.092 6.092 7 S 2.687 3.313 8 O -0.949 6.949 9 O -0.984 6.984 10 C -0.789 4.789 11 C -0.012 4.012 12 C -0.175 4.175 13 C 0.143 3.857 14 C -0.427 4.427 15 H 0.090 0.910 16 C 0.068 3.932 17 N -0.768 5.768 18 Si 0.924 3.076 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.223 4.223 23 C 0.082 3.918 24 Cl -0.073 7.073 25 C -0.166 4.166 26 C -0.166 4.166 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.374 0.626 31 H 0.411 0.589 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.291 0.709 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 5.503 6.977 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.073 3.927 3 H 0.124 0.876 4 O -0.367 6.367 5 C -0.013 4.013 6 N -0.845 5.845 7 S 2.784 3.216 8 O -0.939 6.939 9 O -0.975 6.975 10 C -0.883 4.883 11 C -0.032 4.032 12 C -0.195 4.195 13 C 0.139 3.861 14 C -0.454 4.454 15 H 0.108 0.892 16 C -0.154 4.154 17 N -0.391 5.391 18 Si 0.747 3.253 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.244 4.244 23 C 0.054 3.946 24 Cl -0.044 7.044 25 C -0.204 4.204 26 C -0.205 4.205 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.221 0.779 31 H 0.243 0.757 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.868 6.124 7.496 10.424 hybrid contribution 0.498 -1.301 -1.529 2.069 sum 4.366 4.823 5.967 8.827 Atomic orbital electron populations 1.22639 0.94602 1.03621 1.02301 1.21722 0.94075 0.95102 0.81792 0.87559 1.86512 1.77472 1.29219 1.43545 1.21040 0.99303 0.83894 0.97093 1.55320 1.42814 1.11120 1.75269 1.01687 0.72794 0.73157 0.74001 1.93687 1.69729 1.43570 1.86903 1.93522 1.76771 1.46992 1.80171 1.29186 1.37149 1.00305 1.21686 1.20234 0.93779 0.92558 0.96671 1.21515 1.06039 1.00681 0.91272 1.17762 0.84784 0.90236 0.93302 1.19966 1.34489 0.96420 0.94546 0.89161 1.26164 0.92583 0.95296 1.01340 1.69766 1.26113 1.04884 1.38330 0.86023 0.79644 0.79632 0.79987 1.18752 1.19700 1.18099 1.21038 1.11809 0.98810 0.92778 1.20067 0.96756 0.84015 0.93799 1.98355 1.90700 1.26319 1.89001 1.23691 1.00631 1.00068 0.96029 1.23284 0.90344 1.03689 1.03163 0.93039 0.92794 0.89118 0.77903 0.75668 0.87369 0.85117 0.89738 0.87032 0.86787 0.87766 0.88120 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 7.92 37.16 0.29 -2.09 16 2 C 0.13 1.67 3.58 -26.73 -0.10 1.57 16 3 H 0.11 1.19 8.10 -51.93 -0.42 0.76 16 4 O -0.56 -6.95 13.34 -35.23 -0.47 -7.42 16 5 C 0.08 1.01 1.61 -131.82 -0.21 0.80 16 6 N -1.09 -15.48 5.55 0.54 0.00 -15.47 16 7 S 2.69 49.23 4.78 -107.50 -0.51 48.71 16 8 O -0.95 -17.72 9.37 -57.17 -0.54 -18.26 16 9 O -0.98 -20.70 17.43 -57.17 -1.00 -21.70 16 10 C -0.79 -16.57 5.92 -39.25 -0.23 -16.80 16 11 C -0.01 -0.27 9.49 -39.67 -0.38 -0.64 16 12 C -0.17 -4.12 8.67 -38.87 -0.34 -4.46 16 13 C 0.14 3.43 5.56 -106.83 -0.59 2.83 16 14 C -0.43 -9.89 9.07 -37.74 -0.34 -10.23 16 15 H 0.09 1.96 7.86 -52.49 -0.41 1.55 16 16 C 0.07 1.49 5.28 -17.34 -0.09 1.40 16 17 N -0.77 -17.58 10.75 55.55 0.60 -16.98 16 18 Si 0.92 16.27 29.57 -169.99 -5.03 11.24 16 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 20 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 22 C -0.22 -5.01 9.57 -38.84 -0.37 -5.38 16 23 C 0.08 1.74 5.31 -39.57 -0.21 1.53 16 24 Cl -0.07 -1.35 22.08 -51.86 -1.15 -2.49 16 25 C -0.17 -2.23 8.25 -26.69 -0.22 -2.45 16 26 C -0.17 -1.94 10.18 -26.69 -0.27 -2.21 16 27 H 0.05 0.77 5.28 -51.93 -0.27 0.50 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.32 7.23 -51.93 -0.38 0.95 16 30 H 0.37 3.83 8.96 45.56 0.41 4.24 16 31 H 0.41 4.93 8.96 -34.47 -0.31 4.62 16 32 H 0.11 2.18 7.74 -52.49 -0.41 1.77 16 33 H 0.13 3.12 6.14 -52.49 -0.32 2.80 16 34 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 35 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.11 1.80 5.12 -51.93 -0.27 1.53 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -27.63 338.91 -9.67 -37.29 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -3.63 Total: 16.10 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -3.06 Total: -36.13 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.60 Total: -32.46 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -2.00 Total: -47.37 kcal Atomic # 14 Polarization: 16.27 SS G_CDS: -5.03 Total: 11.24 kcal Atomic # 16 Polarization: 49.23 SS G_CDS: -0.51 Total: 48.71 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.15 Total: -2.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.63 -9.67 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364015516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.661 kcal (2) G-P(sol) polarization free energy of solvation -27.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds