Wall clock time and date at job start Wed Apr 1 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46977 * 2 1 4 4 O 1.42903 * 109.47010 * 119.99533 * 2 1 3 5 5 C 1.52996 * 109.47252 * 239.99738 * 2 1 3 6 6 N 1.46497 * 115.55285 * 304.73919 * 5 2 1 7 7 S 1.65600 * 120.00156 * 85.68533 * 6 5 2 8 8 O 1.42095 * 106.40247 * 340.29801 * 7 6 5 9 9 O 1.42104 * 106.40150 * 207.38260 * 7 6 5 10 10 C 1.76198 * 107.22016 * 93.84362 * 7 6 5 11 11 C 1.38635 * 119.75429 * 83.92159 * 10 7 6 12 12 C 1.37607 * 120.25632 * 180.30097 * 11 10 7 13 13 C 1.40739 * 119.76998 * 359.45337 * 12 11 10 14 14 C 1.41405 * 120.23657 * 180.25317 * 13 12 11 15 15 H 1.08000 * 120.00091 * 208.43813 * 14 13 12 16 16 C 1.39944 * 119.99672 * 28.42419 * 14 13 12 17 17 N 1.30825 * 120.00498 * 9.37528 * 16 14 13 18 18 Si 1.86806 * 119.99909 * 189.36691 * 16 14 13 19 19 H 1.48507 * 109.46677 * 90.00269 * 18 16 14 20 20 H 1.48492 * 109.47347 * 210.00653 * 18 16 14 21 21 H 1.48497 * 109.46972 * 330.00908 * 18 16 14 22 22 C 1.40670 * 119.53078 * 0.27107 * 13 12 11 23 23 C 1.37758 * 119.72844 * 0.02562 * 22 13 12 24 24 Cl 1.73607 * 119.88810 * 179.97438 * 23 22 13 25 25 C 1.53007 * 117.49840 * 90.40486 * 5 2 1 26 26 C 1.52998 * 117.49712 * 159.06427 * 5 2 1 27 27 H 1.09001 * 109.47532 * 171.23732 * 1 2 3 28 28 H 1.08996 * 109.47496 * 291.23910 * 1 2 3 29 29 H 1.09003 * 109.47177 * 51.24007 * 1 2 3 30 30 H 0.96702 * 113.99633 * 60.00226 * 4 2 1 31 31 H 0.97008 * 119.99818 * 265.69103 * 6 5 2 32 32 H 1.07993 * 119.87472 * 0.03257 * 11 10 7 33 33 H 1.07997 * 120.11374 * 179.72029 * 12 11 10 34 34 H 0.96992 * 120.00657 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.13587 * 180.02562 * 22 13 12 36 36 H 1.08994 * 117.49688 * 215.00462 * 25 5 2 37 37 H 1.09003 * 117.49537 * 0.02681 * 25 5 2 38 38 H 1.08996 * 117.50147 * 359.97438 * 26 5 2 39 39 H 1.09008 * 117.49652 * 144.97651 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 7 1.5406 -2.0853 -1.4394 7 16 0.0929 -2.3381 -2.2028 8 8 -0.6177 -1.1096 -2.1325 9 8 -0.4198 -3.5625 -1.6955 10 6 0.4432 -2.6136 -3.9074 11 6 0.7992 -3.8816 -4.3405 12 6 1.0809 -4.1070 -5.6684 13 6 0.9955 -3.0473 -6.5906 14 6 1.2777 -3.2691 -7.9583 15 1 1.6605 -2.4642 -8.5682 16 6 1.0612 -4.5318 -8.5216 17 7 0.4301 -5.4528 -7.8397 18 14 1.6732 -4.9021 -10.2473 19 1 3.0539 -5.4445 -10.1770 20 1 0.7802 -5.9024 -10.8852 21 1 1.6723 -3.6537 -11.0513 22 6 0.6278 -1.7658 -6.1420 23 6 0.3561 -1.5612 -4.8071 24 17 -0.0974 0.0189 -4.2488 25 6 2.2845 0.1226 -2.5018 26 6 3.4705 -0.4231 -1.7025 27 1 -0.3634 -1.0156 -0.1566 28 1 -0.3634 0.3723 0.9578 29 1 -0.3634 0.6434 -0.8014 30 1 1.7209 -1.5952 1.2330 31 1 2.0579 -2.8404 -1.1182 32 1 0.8599 -4.6946 -3.6323 33 1 1.3624 -5.0947 -6.0025 34 1 0.2797 -6.3278 -8.2302 35 1 0.5589 -0.9456 -6.8413 36 1 2.0738 -0.3372 -3.4673 37 1 2.0825 1.1917 -2.4358 38 1 4.0481 0.2873 -1.1111 39 1 4.0402 -1.2419 -2.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364015516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:02 Heat of formation + Delta-G solvation = -97.108499 kcal Electronic energy + Delta-G solvation = -26913.625947 eV Core-core repulsion = 22974.240786 eV Total energy + Delta-G solvation = -3939.385161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15701 -39.61381 -38.07390 -37.23055 -36.81713 -36.66433 -35.71403 -33.07861 -32.22645 -31.25702 -31.05639 -27.76177 -24.79630 -23.50358 -23.38993 -23.11112 -21.71504 -20.13641 -19.56761 -18.82996 -18.27491 -17.96250 -17.31726 -17.01415 -16.29979 -16.21093 -15.88449 -15.52677 -15.33341 -15.05831 -14.81650 -14.47594 -14.10271 -14.00193 -13.68307 -13.35454 -13.26566 -13.23435 -12.95720 -12.86366 -12.80498 -12.60982 -12.42056 -12.28025 -12.14431 -11.98582 -11.81083 -11.73744 -11.65998 -11.41700 -11.26265 -10.84395 -10.72999 -10.19487 -9.87496 -9.43600 -8.86953 -6.75655 -0.34615 0.30811 0.80553 1.29707 1.37144 1.41884 1.51782 2.09930 2.20041 2.48350 2.67606 2.93710 3.36371 3.51885 3.55759 3.61491 3.92678 3.99253 4.11874 4.26330 4.44133 4.51359 4.71646 4.78200 4.83257 4.90296 4.92209 5.02322 5.04131 5.09700 5.22800 5.26816 5.31531 5.36442 5.50489 5.58919 5.80012 5.96722 6.15434 6.37864 6.58841 6.63286 6.76184 8.05547 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.003695 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.579914 B = 7575.219380 C = 7789.319965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 H 0.126 0.874 4 O -0.566 6.566 5 C 0.066 3.934 6 N -1.077 6.077 7 S 2.711 3.289 8 O -0.951 6.951 9 O -1.010 7.010 10 C -0.800 4.800 11 C -0.018 4.018 12 C -0.196 4.196 13 C 0.119 3.881 14 C -0.456 4.456 15 H 0.096 0.904 16 C 0.032 3.968 17 N -0.802 5.802 18 Si 0.996 3.004 19 H -0.257 1.257 20 H -0.267 1.267 21 H -0.253 1.253 22 C -0.241 4.241 23 C 0.080 3.920 24 Cl -0.048 7.048 25 C -0.182 4.182 26 C -0.144 4.144 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.382 0.618 31 H 0.423 0.577 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.299 0.701 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 6.526 7.692 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.079 3.921 3 H 0.144 0.856 4 O -0.372 6.372 5 C -0.024 4.024 6 N -0.835 5.835 7 S 2.805 3.195 8 O -0.941 6.941 9 O -1.001 7.001 10 C -0.891 4.891 11 C -0.038 4.038 12 C -0.217 4.217 13 C 0.115 3.885 14 C -0.483 4.483 15 H 0.114 0.886 16 C -0.187 4.187 17 N -0.425 5.425 18 Si 0.815 3.185 19 H -0.181 1.181 20 H -0.191 1.191 21 H -0.177 1.177 22 C -0.262 4.262 23 C 0.052 3.948 24 Cl -0.019 7.019 25 C -0.220 4.220 26 C -0.183 4.183 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.925 7.134 8.197 11.931 hybrid contribution 0.152 -1.523 -1.580 2.200 sum 5.077 5.611 6.617 10.052 Atomic orbital electron populations 1.22632 0.95787 1.02336 1.02608 1.21726 0.93065 0.95944 0.81355 0.85630 1.86502 1.77415 1.30005 1.43310 1.21298 1.00736 0.82946 0.97407 1.54879 1.41958 1.12537 1.74105 1.00998 0.73325 0.72397 0.72807 1.93679 1.70483 1.43387 1.86595 1.93487 1.78006 1.48462 1.80110 1.29707 1.35753 0.99820 1.23843 1.20447 0.93369 0.93566 0.96411 1.21524 1.07601 1.00412 0.92120 1.18081 0.85445 0.90946 0.94049 1.20260 1.35682 0.97649 0.94665 0.88598 1.27032 0.92007 0.94508 1.05139 1.69812 1.26904 1.05554 1.40236 0.84967 0.79150 0.79466 0.74901 1.18107 1.19121 1.17669 1.21187 1.12617 0.98696 0.93682 1.20178 0.95869 0.85289 0.93513 1.98353 1.90394 1.24447 1.88657 1.23703 1.02476 1.00876 0.94961 1.23384 0.89492 1.03589 1.01854 0.94693 0.91528 0.90175 0.76943 0.74186 0.86105 0.86181 0.88960 0.86366 0.89220 0.86221 0.85612 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.46 7.92 71.98 0.57 -3.89 16 2 C 0.14 3.08 3.58 30.59 0.11 3.19 16 3 H 0.13 2.32 8.10 -2.38 -0.02 2.30 16 4 O -0.57 -12.25 13.34 -148.98 -1.99 -14.24 16 5 C 0.07 1.58 1.61 3.60 0.01 1.58 16 6 N -1.08 -28.84 5.55 -152.22 -0.84 -29.69 16 7 S 2.71 97.47 4.78 -56.49 -0.27 97.20 16 8 O -0.95 -34.63 9.37 -128.00 -1.20 -35.83 16 9 O -1.01 -42.04 17.43 -128.00 -2.23 -44.27 16 10 C -0.80 -33.79 5.92 22.48 0.13 -33.66 16 11 C -0.02 -0.80 9.49 22.22 0.21 -0.59 16 12 C -0.20 -9.61 8.67 22.73 0.20 -9.41 16 13 C 0.12 5.87 5.56 -21.29 -0.12 5.75 16 14 C -0.46 -21.67 9.07 23.46 0.21 -21.46 16 15 H 0.10 4.27 7.86 -2.91 -0.02 4.24 16 16 C 0.03 1.41 5.28 85.26 0.45 1.87 16 17 N -0.80 -37.61 10.75 21.83 0.23 -37.38 16 18 Si 1.00 33.16 29.57 68.60 2.03 35.19 16 19 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 20 H -0.27 -8.57 7.11 99.48 0.71 -7.86 16 21 H -0.25 -8.18 7.11 99.48 0.71 -7.48 16 22 C -0.24 -11.06 9.57 22.75 0.22 -10.84 16 23 C 0.08 3.41 5.31 22.27 0.12 3.53 16 24 Cl -0.05 -1.73 22.08 -2.72 -0.06 -1.79 16 25 C -0.18 -4.51 8.25 30.62 0.25 -4.26 16 26 C -0.14 -2.93 10.18 30.62 0.31 -2.62 16 27 H 0.03 0.99 5.28 -2.39 -0.01 0.97 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 2.20 7.23 -2.39 -0.02 2.18 16 30 H 0.38 6.83 8.96 -74.06 -0.66 6.17 16 31 H 0.42 9.41 8.96 -96.74 -0.87 8.55 16 32 H 0.12 4.95 7.74 -2.91 -0.02 4.93 16 33 H 0.12 6.02 6.14 -2.91 -0.02 6.00 16 34 H 0.30 12.51 8.30 -92.71 -0.77 11.75 16 35 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 36 H 0.09 2.73 5.12 -2.39 -0.01 2.72 16 37 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -59.55 338.91 -2.06 -61.61 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.41 Total: 40.01 kcal Atomic # 6 Polarization: -73.49 SS G_CDS: 2.67 Total: -70.81 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.61 Total: -67.06 kcal Atomic # 8 Polarization: -88.92 SS G_CDS: -5.42 Total: -94.34 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Atomic # 16 Polarization: 97.47 SS G_CDS: -0.27 Total: 97.20 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.06 Total: -1.79 kcal Total: -59.55 -2.06 -61.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364015516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.499 kcal (2) G-P(sol) polarization free energy of solvation -59.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds