Wall clock time and date at job start Wed Apr 1 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99952 * 2 1 4 4 H 1.08989 * 112.91047 * 18.74082 * 3 2 1 5 5 C 1.53781 * 113.61415 * 149.99861 * 3 2 1 6 6 C 1.53779 * 87.08194 * 139.97724 * 5 3 2 7 7 H 1.09006 * 113.61342 * 220.01644 * 6 5 3 8 8 N 1.46504 * 113.61569 * 89.19872 * 6 5 3 9 9 S 1.65592 * 120.00033 * 145.27767 * 8 6 5 10 10 O 1.42105 * 106.40536 * 48.05619 * 9 8 6 11 11 O 1.42100 * 106.40328 * 180.98039 * 9 8 6 12 12 C 1.76203 * 107.21898 * 294.51531 * 9 8 6 13 13 C 1.38635 * 119.75585 * 115.24381 * 12 9 8 14 14 C 1.37605 * 120.26247 * 180.02562 * 13 12 9 15 15 C 1.40739 * 119.76982 * 359.97438 * 14 13 12 16 16 C 1.41396 * 120.23782 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00497 * 207.21768 * 16 15 14 18 18 C 1.39946 * 119.99793 * 27.21725 * 16 15 14 19 19 N 1.30825 * 119.99965 * 12.21572 * 18 16 15 20 20 Si 1.86807 * 119.99903 * 192.22125 * 18 16 15 21 21 H 1.48496 * 109.47044 * 59.99847 * 20 18 16 22 22 H 1.48494 * 109.46919 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46620 * 299.99844 * 20 18 16 24 24 C 1.40676 * 119.52714 * 0.02562 * 15 14 13 25 25 C 1.37757 * 119.72836 * 359.75364 * 24 15 14 26 26 Cl 1.73603 * 119.88840 * 180.23396 * 25 24 15 27 27 C 1.53780 * 113.60823 * 247.49040 * 3 2 1 28 28 H 1.09005 * 109.46486 * 60.00800 * 1 2 3 29 29 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47868 * 300.01037 * 1 2 3 31 31 H 1.09005 * 113.60889 * 254.52411 * 5 3 2 32 32 H 1.09000 * 113.61898 * 25.34132 * 5 3 2 33 33 H 0.97002 * 119.99912 * 325.27399 * 8 6 5 34 34 H 1.08004 * 119.86939 * 359.97438 * 13 12 9 35 35 H 1.08001 * 120.11617 * 179.97438 * 14 13 12 36 36 H 0.96993 * 119.99722 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.13521 * 180.02562 * 24 15 14 38 38 H 1.09003 * 113.62038 * 334.56930 * 27 3 2 39 39 H 1.09007 * 113.61685 * 105.47439 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 0.3225 5 6 3.3755 1.3720 0.7045 6 6 3.8227 2.3181 -0.4222 7 1 4.8427 2.1398 -0.7630 8 7 3.5550 3.7311 -0.1429 9 16 4.6066 4.8941 -0.6756 10 8 4.8678 4.6036 -2.0419 11 8 4.0862 6.1395 -0.2315 12 6 6.1267 4.6556 0.1831 13 6 7.2647 4.2924 -0.5204 14 6 8.4571 4.1030 0.1398 15 6 8.5194 4.2797 1.5347 16 6 9.7393 4.0871 2.2231 17 1 9.7325 3.7877 3.2607 18 6 10.9557 4.2844 1.5598 19 7 10.9756 4.8712 0.3907 20 14 12.5510 3.7096 2.3437 21 1 12.4948 2.2417 2.5612 22 1 13.6884 4.0333 1.4457 23 1 12.7375 4.3964 3.6471 24 6 7.3589 4.6483 2.2393 25 6 6.1769 4.8372 1.5576 26 17 4.7437 5.2980 2.4221 27 6 2.7535 1.6487 -1.3017 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8898 31 1 3.3382 1.8473 1.6848 32 1 3.9081 0.4210 0.7152 33 1 2.7618 3.9855 0.3540 34 1 7.2151 4.1568 -1.5907 35 1 9.3422 3.8196 -0.4105 36 1 11.8187 5.0083 -0.0688 37 1 7.3956 4.7870 3.3097 38 1 3.1167 0.7738 -1.8409 39 1 2.2142 2.3475 -1.9413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414313277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:43 Heat of formation + Delta-G solvation = -93.438782 kcal Electronic energy + Delta-G solvation = -25895.551148 eV Core-core repulsion = 21956.325118 eV Total energy + Delta-G solvation = -3939.226030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.63439 -37.89626 -36.66940 -36.43495 -35.75646 -35.14920 -34.04770 -32.05680 -30.47363 -29.37963 -26.96568 -26.04838 -25.68077 -23.97971 -21.69278 -21.47265 -19.84237 -19.08330 -17.85037 -17.52210 -16.73808 -16.43162 -15.84321 -15.65980 -15.47938 -15.22091 -14.60912 -14.57231 -13.78928 -13.46570 -13.28168 -13.00678 -12.89027 -12.81440 -12.55610 -12.41123 -12.24408 -11.76285 -11.60051 -11.50893 -11.42440 -11.34188 -11.19485 -11.16132 -11.01122 -10.65424 -10.57450 -10.47779 -10.43866 -10.06704 -9.72119 -9.61948 -9.54520 -9.12190 -8.14815 -7.72874 -7.22800 -4.97392 1.16072 2.02056 2.59177 2.81211 2.83727 2.85066 2.89244 3.56708 3.60670 3.70812 4.09805 4.39034 4.51933 4.57094 4.82844 4.88159 5.09021 5.16378 5.20999 5.26468 5.38373 5.44678 5.51821 5.78030 5.86452 5.92779 6.00793 6.05097 6.36502 6.50695 6.53095 6.65346 6.73565 6.95569 7.08737 7.11418 7.26972 7.39221 7.55332 7.73286 8.13828 8.32908 8.40284 9.67127 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003386 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.498205 B = 8266.453722 C = 8763.691064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.086 0.914 5 C -0.142 4.142 6 C 0.140 3.860 7 H 0.111 0.889 8 N -1.104 6.104 9 S 2.697 3.303 10 O -0.980 6.980 11 O -0.969 6.969 12 C -0.788 4.788 13 C -0.011 4.011 14 C -0.176 4.176 15 C 0.144 3.856 16 C -0.426 4.426 17 H 0.090 0.910 18 C 0.069 3.931 19 N -0.765 5.765 20 Si 0.923 3.077 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.222 4.222 25 C 0.093 3.907 26 Cl -0.103 7.103 27 C -0.166 4.166 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.410 0.590 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.292 0.708 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 -7.034 0.242 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.103 0.897 5 C -0.181 4.181 6 C 0.031 3.969 7 H 0.128 0.872 8 N -0.858 5.858 9 S 2.793 3.207 10 O -0.970 6.970 11 O -0.959 6.959 12 C -0.882 4.882 13 C -0.031 4.031 14 C -0.197 4.197 15 C 0.140 3.860 16 C -0.453 4.453 17 H 0.108 0.892 18 C -0.154 4.154 19 N -0.387 5.387 20 Si 0.746 3.254 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.243 4.243 25 C 0.065 3.935 26 Cl -0.074 7.074 27 C -0.206 4.206 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.243 0.757 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.476 -6.455 -0.629 12.321 hybrid contribution 0.532 -0.049 1.143 1.261 sum -9.945 -6.504 0.514 11.894 Atomic orbital electron populations 1.22759 0.81595 1.02479 0.99841 1.87941 1.19314 1.27753 1.94622 1.23849 0.94024 0.84792 0.97203 0.89662 1.23623 0.95094 1.00479 0.98935 1.21216 0.99545 0.80032 0.96125 0.87150 1.55556 1.39217 1.17573 1.73447 1.01295 0.73517 0.72435 0.73468 1.93494 1.85757 1.84998 1.32783 1.93557 1.79627 1.40003 1.82754 1.29091 1.19117 1.36942 1.03098 1.20321 0.91438 0.93494 0.97845 1.21485 0.96892 1.06264 0.95017 1.17738 0.91346 0.84647 0.92281 1.19928 0.89829 1.36592 0.98912 0.89173 1.26167 1.02248 0.92402 0.94540 1.69771 1.30338 1.26111 1.12480 0.86086 0.78714 0.80559 0.80009 1.18265 1.19778 1.18462 1.20968 0.92127 1.12088 0.99094 1.19963 0.86628 0.96743 0.90198 1.98320 1.40064 1.91169 1.77890 1.23985 0.98147 1.01195 0.97275 0.94135 0.89926 0.94170 0.90004 0.88058 0.75728 0.86506 0.85175 0.89634 0.87049 0.88270 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.35 10.71 -35.23 -0.38 -4.73 16 3 C 0.06 0.65 4.14 -25.92 -0.11 0.54 16 4 H 0.09 0.83 7.85 -51.94 -0.41 0.42 16 5 C -0.14 -1.66 7.70 -25.92 -0.20 -1.86 16 6 C 0.14 1.85 4.43 -67.12 -0.30 1.56 16 7 H 0.11 1.54 8.05 -51.93 -0.42 1.12 16 8 N -1.10 -16.12 5.50 -4.19 -0.02 -16.14 16 9 S 2.70 51.53 5.00 -107.50 -0.54 50.99 16 10 O -0.98 -20.45 16.69 -57.17 -0.95 -21.41 16 11 O -0.97 -20.56 16.46 -57.17 -0.94 -21.50 16 12 C -0.79 -16.83 5.91 -39.25 -0.23 -17.07 16 13 C -0.01 -0.23 9.52 -39.67 -0.38 -0.61 16 14 C -0.18 -4.17 8.67 -38.87 -0.34 -4.50 16 15 C 0.14 3.45 5.56 -106.83 -0.59 2.86 16 16 C -0.43 -9.86 9.07 -37.74 -0.34 -10.21 16 17 H 0.09 1.95 7.87 -52.49 -0.41 1.54 16 18 C 0.07 1.51 5.24 -17.34 -0.09 1.42 16 19 N -0.76 -17.48 10.81 55.55 0.60 -16.88 16 20 Si 0.92 16.26 29.58 -169.99 -5.03 11.23 16 21 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 22 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 24 C -0.22 -5.01 9.57 -38.84 -0.37 -5.39 16 25 C 0.09 2.00 6.29 -39.58 -0.25 1.75 16 26 Cl -0.10 -1.93 26.41 -51.86 -1.37 -3.30 16 27 C -0.17 -1.94 7.71 -25.92 -0.20 -2.14 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.41 5.11 8.80 -34.46 -0.30 4.81 16 34 H 0.12 2.42 7.31 -52.48 -0.38 2.04 16 35 H 0.13 3.10 6.15 -52.49 -0.32 2.78 16 36 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 37 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -28.31 356.52 -10.32 -38.64 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.76 Total: 10.03 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: -2.30 Total: -32.31 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.58 Total: -33.02 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -2.27 Total: -47.64 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.54 Total: 50.99 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -1.37 Total: -3.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.31 -10.32 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414313277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.801 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds