Wall clock time and date at job start Wed Apr 1 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 2 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 2 16 16 C 1.39012 * 119.99940 * 179.97438 * 15 13 12 17 17 N 1.28719 * 125.03688 * 359.69954 * 16 15 13 18 18 C 1.33887 * 118.11845 * 179.89150 * 17 16 15 19 19 C 1.33686 * 112.75093 * 0.31681 * 18 17 16 20 20 S 1.70666 * 125.03880 * 180.02562 * 16 15 13 21 21 C 1.51488 * 127.81476 * 180.12436 * 19 18 17 22 22 S 1.81633 * 108.87336 * 342.09370 * 21 19 18 23 23 O 1.42100 * 108.83274 * 159.50308 * 22 21 19 24 24 O 1.42106 * 108.83067 * 291.19087 * 22 21 19 25 25 C 1.81861 * 100.34327 * 45.36510 * 22 21 19 26 26 C 1.51854 * 120.40546 * 179.97438 * 18 17 16 27 27 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 32 32 H 0.97000 * 120.00523 * 0.02562 * 15 13 12 33 33 H 1.08997 * 109.57730 * 101.91109 * 21 19 18 34 34 H 1.09003 * 109.57331 * 222.16192 * 21 19 18 35 35 H 1.09007 * 109.60736 * 53.99680 * 25 22 21 36 36 H 1.08998 * 109.60644 * 174.49134 * 25 22 21 37 37 H 1.08994 * 109.07984 * 39.93229 * 26 18 17 38 38 H 1.08998 * 109.08102 * 280.95250 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8526 1.1600 2.4131 15 7 2.5857 -0.6565 3.4602 16 6 2.7135 0.0356 4.6590 17 7 2.4417 1.2828 4.8248 18 6 2.6137 1.8095 6.0437 19 6 3.0664 0.9192 6.9324 20 16 3.2614 -0.6404 6.1271 21 6 3.3752 1.1448 8.3982 22 16 3.5501 2.9283 8.6941 23 8 3.3635 3.1839 10.0794 24 8 4.7326 3.3860 8.0524 25 6 2.1064 3.5537 7.7820 26 6 2.3096 3.2755 6.2974 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.7088 1.1614 -3.4844 31 1 2.2490 -1.6319 1.1525 32 1 2.8167 -1.5976 3.4166 33 1 2.5615 0.7517 9.0076 34 1 4.3042 0.6371 8.6580 35 1 1.2063 3.0465 8.1296 36 1 2.0092 4.6274 7.9429 37 1 1.4044 3.5504 5.7562 38 1 3.1395 3.8800 5.9317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425876158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:49 Heat of formation + Delta-G solvation = -66.650923 kcal Electronic energy + Delta-G solvation = -25180.649989 eV Core-core repulsion = 21276.922025 eV Total energy + Delta-G solvation = -3903.727964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73603 -40.51344 -38.16463 -37.23573 -37.14359 -36.22205 -34.84003 -34.13766 -32.78654 -30.83792 -28.09536 -27.34009 -25.92078 -25.02986 -22.97367 -22.05486 -20.85554 -20.45000 -19.61723 -18.93330 -18.32111 -17.89013 -17.49496 -17.10746 -16.96881 -16.71326 -16.38509 -16.03942 -15.79090 -15.44598 -15.16303 -14.65229 -14.44314 -14.36024 -14.30425 -13.77045 -13.66991 -13.25772 -13.19899 -13.11651 -12.98626 -12.93058 -12.77275 -12.69100 -12.28708 -12.11835 -11.98949 -11.69140 -11.51323 -11.23113 -11.09987 -10.62900 -10.36779 -10.25426 -9.86717 -9.22919 -8.18114 -6.35392 -1.09123 -0.39602 -0.18978 0.44682 1.45359 1.45518 1.52260 1.55139 1.59633 1.68007 2.28575 2.40720 2.58798 2.77267 3.00566 3.13177 3.28871 3.48868 3.62361 3.93860 4.01588 4.10342 4.31309 4.49667 4.67790 4.73431 4.82217 4.91686 4.99538 5.07834 5.21570 5.31085 5.55764 5.58046 5.74694 5.98227 6.08465 6.68721 6.73376 7.17372 7.33294 7.61248 8.88734 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.028374 B = 0.002281 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.582443 B =12275.004749 C =12714.478330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H -0.002 1.002 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.709 5.709 13 C 0.688 3.312 14 O -0.585 6.585 15 N -0.634 5.634 16 C 0.283 3.717 17 N -0.527 5.527 18 C 0.076 3.924 19 C -0.242 4.242 20 S 0.210 5.790 21 C -0.512 4.512 22 S 2.438 3.562 23 O -0.958 6.958 24 O -0.968 6.968 25 C -0.580 4.580 26 C -0.038 4.038 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.009 0.991 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.436 0.564 33 H 0.187 0.813 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 -4.872 24.630 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.187 3.813 3 H 0.016 0.984 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.363 5.363 13 C 0.385 3.615 14 O -0.460 6.460 15 N -0.290 5.290 16 C -0.088 4.088 17 N -0.248 5.248 18 C -0.055 4.055 19 C -0.366 4.366 20 S 0.463 5.537 21 C -0.643 4.643 22 S 2.622 3.378 23 O -0.956 6.956 24 O -0.965 6.965 25 C -0.711 4.711 26 C -0.079 4.079 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.277 0.723 33 H 0.204 0.796 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.123 0.877 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.738 -4.010 24.722 25.323 hybrid contribution -0.476 -0.480 -1.718 1.846 sum 3.262 -4.490 23.004 23.664 Atomic orbital electron populations 1.21922 0.98290 0.99572 0.99509 1.18278 0.90938 0.91650 0.80467 0.98375 1.21546 1.32595 1.13641 0.90454 0.90501 1.25806 0.94889 0.95593 1.02357 1.70062 1.36972 1.23944 1.24615 0.85261 0.78049 0.78480 0.78300 1.18191 1.20448 1.21195 1.45445 1.68902 1.14147 1.07854 1.16303 0.79064 0.85215 0.80882 1.90982 1.55401 1.15617 1.83971 1.42127 1.67849 1.14077 1.04927 1.23162 1.00785 0.92071 0.92818 1.66309 1.23619 1.10963 1.23939 1.20998 0.99956 0.98267 0.86304 1.24727 1.15560 0.97023 0.99252 1.83479 1.63505 1.09771 0.96994 1.28930 1.14480 1.26121 0.94795 1.07330 0.77332 0.78376 0.74759 1.93595 1.87133 1.83721 1.31109 1.93578 1.45831 1.79335 1.77803 1.29942 1.20709 1.15601 1.04867 1.19831 1.05686 0.87653 0.94687 0.91387 0.93827 0.97160 0.92524 0.75872 0.72298 0.79573 0.81410 0.81384 0.81193 0.87716 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.29 14.84 2.56 44.25 0.11 14.96 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.54 -28.06 8.73 25.60 0.22 -27.84 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 8 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 12 N -0.71 -28.53 5.07 -461.41 -2.34 -30.87 16 13 C 0.69 27.97 8.49 179.05 1.52 29.49 16 14 O -0.58 -29.99 14.65 -3.98 -0.06 -30.05 16 15 N -0.63 -18.32 5.41 -328.28 -1.78 -20.10 16 16 C 0.28 8.15 8.01 179.46 1.44 9.59 16 17 N -0.53 -17.93 8.56 -187.83 -1.61 -19.54 16 18 C 0.08 1.90 6.62 41.58 0.28 2.17 16 19 C -0.24 -4.40 6.33 24.90 0.16 -4.24 16 20 S 0.21 3.66 23.17 -56.49 -1.31 2.35 16 21 C -0.51 -4.78 6.68 71.49 0.48 -4.30 16 22 S 2.44 33.30 5.39 -56.49 -0.30 32.99 16 23 O -0.96 -17.45 18.11 -127.41 -2.31 -19.76 16 24 O -0.97 -22.24 17.82 -127.41 -2.27 -24.51 16 25 C -0.58 -5.97 6.37 71.79 0.46 -5.51 16 26 C -0.04 -0.75 5.79 30.02 0.17 -0.58 16 27 H 0.07 3.75 6.07 -2.38 -0.01 3.73 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.41 12.94 8.55 -92.71 -0.79 12.15 16 32 H 0.44 8.22 8.83 -92.71 -0.82 7.40 16 33 H 0.19 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.17 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.10 2.08 8.10 -2.39 -0.02 2.06 16 Total: -1.00 -87.03 346.68 -4.23 -91.25 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.47 Total: 18.04 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.95 Total: 8.84 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.48 Total: -122.44 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -4.64 Total: -74.31 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -1.61 Total: 35.35 kcal Total: -87.03 -4.23 -91.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425876158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.603 kcal (2) G-P(sol) polarization free energy of solvation -87.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds