Wall clock time and date at job start Wed Apr 1 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35968 * 116.99624 * 2 1 4 4 C 1.37569 * 120.82112 * 180.02562 * 3 2 1 5 5 C 1.38035 * 114.24917 * 180.02562 * 4 3 2 6 6 C 1.47116 * 127.76124 * 180.02562 * 5 4 3 7 7 O 1.21629 * 120.00189 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99728 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46641 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.46889 * 180.02562 * 10 9 8 12 12 C 1.34773 * 119.99820 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00039 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99602 * 179.97438 * 12 11 10 15 15 S 1.81009 * 109.46843 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99673 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00546 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99409 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99367 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47045 * 90.00321 * 20 18 16 22 22 H 1.48502 * 109.46554 * 210.00037 * 20 18 16 23 23 H 1.48497 * 109.47486 * 329.99700 * 20 18 16 24 24 S 1.77239 * 104.48148 * 359.97438 * 5 4 3 25 25 N 1.30357 * 120.82839 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47156 * 300.00498 * 1 2 3 28 28 H 1.08997 * 109.47023 * 60.00447 * 1 2 3 29 29 H 1.08004 * 122.87524 * 0.03450 * 4 3 2 30 30 H 0.96995 * 119.99507 * 0.02562 * 8 6 5 31 31 H 1.08997 * 109.47563 * 300.00156 * 9 8 6 32 32 H 1.08996 * 109.47127 * 60.00517 * 9 8 6 33 33 H 1.09005 * 109.47001 * 299.99982 * 10 9 8 34 34 H 1.08996 * 109.47061 * 60.00327 * 10 9 8 35 35 H 0.96997 * 119.99932 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.47524 * 300.00148 * 14 12 11 37 37 H 1.08996 * 109.47137 * 60.00491 * 14 12 11 38 38 H 0.97002 * 120.00080 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 0.0001 6 6 5.3049 3.0353 -0.0007 7 8 6.1993 2.2110 -0.0017 8 7 5.6004 4.3503 -0.0004 9 6 6.9988 4.7868 -0.0007 10 6 7.0558 6.3158 0.0003 11 7 8.4542 6.7523 -0.0005 12 6 8.7497 8.0673 -0.0004 13 8 7.8578 8.8891 0.0001 14 6 10.1882 8.5163 -0.0007 15 16 10.2556 10.3251 0.0004 16 6 12.0011 10.5662 -0.0009 17 1 12.6640 9.7136 -0.0025 18 6 12.5240 11.8520 -0.0011 19 7 11.7161 12.8911 0.0003 20 14 14.3745 12.1075 -0.0018 21 1 14.8642 12.1753 -1.4021 22 1 14.6991 13.3763 0.6982 23 1 15.0310 10.9742 0.6979 24 16 2.4471 3.6111 0.0006 25 7 1.3521 2.3149 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0643 0.4373 -0.0015 30 1 4.8871 5.0076 0.0007 31 1 7.4990 4.4043 0.8890 32 1 7.4984 4.4049 -0.8910 33 1 6.5554 6.6986 -0.8892 34 1 6.5562 6.6973 0.8908 35 1 9.1675 6.0950 -0.0020 36 1 10.6885 8.1339 0.8890 37 1 10.6879 8.1343 -0.8909 38 1 12.0816 13.7896 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574893661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:58 Heat of formation + Delta-G solvation = -59.271704 kcal Electronic energy + Delta-G solvation = -23018.337939 eV Core-core repulsion = 19114.929963 eV Total energy + Delta-G solvation = -3903.407977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83582 -40.15928 -39.23343 -37.06718 -36.12923 -34.15953 -32.45284 -32.05074 -30.41527 -28.79343 -28.07799 -25.59568 -25.32376 -23.15171 -22.13368 -20.68917 -20.41184 -19.29027 -18.31931 -17.91185 -16.93271 -16.83496 -16.70391 -16.32980 -16.10620 -15.65622 -15.30656 -15.26874 -14.82287 -14.50307 -14.36975 -13.97656 -13.89989 -13.84376 -13.23623 -12.63026 -12.59400 -12.52652 -12.18594 -12.02343 -11.76024 -11.68387 -11.45035 -11.08089 -11.04799 -10.82055 -10.76813 -10.35127 -9.84715 -9.74494 -9.54626 -9.11206 -9.04926 -8.98692 -8.27748 -6.53410 -6.24112 -3.95104 -0.47806 0.54794 0.92894 1.62414 2.08873 2.45586 2.64406 2.98820 3.06407 3.21242 3.27342 3.31845 3.68067 3.94452 4.18049 4.22767 4.38216 4.57854 4.64231 4.69505 4.69579 4.98376 5.04474 5.08493 5.11406 5.12108 5.47934 5.49961 5.51543 5.59974 5.76256 5.84203 6.09565 6.41254 6.41877 6.72173 7.42809 7.54531 7.57854 8.32905 8.48422 9.21469 10.83324 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.047103 B = 0.001404 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.295031 B =19939.609207 C =20502.854387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.294 6.294 3 C 0.305 3.695 4 C -0.123 4.123 5 C -0.186 4.186 6 C 0.598 3.402 7 O -0.510 6.510 8 N -0.715 5.715 9 C 0.109 3.891 10 C 0.109 3.891 11 N -0.737 5.737 12 C 0.535 3.465 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 S 0.294 5.706 25 N -0.506 5.506 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.180 0.820 30 H 0.405 0.595 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.263 -25.838 -0.003 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.092 3.908 4 C -0.161 4.161 5 C -0.318 4.318 6 C 0.381 3.619 7 O -0.385 6.385 8 N -0.368 5.368 9 C -0.014 4.014 10 C -0.016 4.016 11 N -0.393 5.393 12 C 0.321 3.679 13 O -0.388 6.388 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 S 0.443 5.557 25 N -0.348 5.348 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.197 0.803 30 H 0.240 0.760 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.480 -23.508 0.004 32.526 hybrid contribution 2.828 -2.175 -0.011 3.568 sum -19.652 -25.683 -0.007 32.339 Atomic orbital electron populations 1.23033 0.76336 1.03914 1.02731 1.86331 1.23286 1.22263 1.88042 1.19920 0.89800 0.85396 0.95682 1.20792 0.92420 0.98604 1.04256 1.25898 0.99185 0.97984 1.08734 1.16562 0.85471 0.82658 0.77190 1.90887 1.46701 1.52421 1.48512 1.45586 1.09513 1.06455 1.75213 1.21579 0.81517 0.94303 1.04033 1.21324 0.84867 0.91938 1.03461 1.45789 1.07162 1.07865 1.78452 1.20333 0.91412 0.81222 0.74945 1.90712 1.48780 1.52073 1.47261 1.23532 0.94399 1.07346 1.05144 1.85399 1.09453 0.91734 1.96745 1.22868 0.91356 0.95175 1.59079 0.90865 1.24987 0.99147 0.94906 0.94465 1.70010 1.34943 0.98532 1.46794 0.86166 0.83091 0.77870 0.78372 1.20254 1.20739 1.19673 1.85063 0.89718 1.11938 1.68948 1.76483 1.26558 1.01043 1.30679 0.87756 0.91942 0.91937 0.80285 0.76019 0.89902 0.89894 0.90696 0.90688 0.76405 0.89021 0.89024 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.43 101.05 1.05 1.22 16 2 O -0.29 -2.20 10.52 -19.64 -0.21 -2.41 16 3 C 0.31 2.49 7.36 -18.42 -0.14 2.35 16 4 C -0.12 -0.95 10.09 -39.90 -0.40 -1.35 16 5 C -0.19 -1.42 6.74 -36.06 -0.24 -1.66 16 6 C 0.60 5.25 7.80 -12.66 -0.10 5.15 16 7 O -0.51 -6.10 16.95 5.25 0.09 -6.01 16 8 N -0.71 -4.91 5.55 -61.48 -0.34 -5.25 16 9 C 0.11 0.79 5.79 -4.04 -0.02 0.77 16 10 C 0.11 1.00 5.79 -4.04 -0.02 0.98 16 11 N -0.74 -8.48 5.56 -60.29 -0.33 -8.82 16 12 C 0.53 9.23 7.85 -10.99 -0.09 9.14 16 13 O -0.51 -10.96 15.86 5.56 0.09 -10.87 16 14 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 20 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 S 0.29 1.97 23.27 -107.50 -2.50 -0.53 16 25 N -0.51 -4.29 11.03 29.19 0.32 -3.97 16 26 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.30 8.12 -51.93 -0.42 -0.13 16 28 H 0.06 0.30 8.13 -51.93 -0.42 -0.13 16 29 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.40 2.01 7.83 -40.82 -0.32 1.69 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -36.53 370.12 -7.78 -44.31 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.44 Total: -0.40 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.46 Total: 1.16 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.38 Total: -43.12 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.03 Total: -19.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -4.71 Total: -4.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.53 -7.78 -44.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574893661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.960 kcal (2) G-P(sol) polarization free energy of solvation -36.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds