Wall clock time and date at job start Wed Apr 1 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 116.99882 * 2 1 4 4 C 1.38905 * 119.94063 * 0.02562 * 3 2 1 5 5 C 1.38263 * 120.28361 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.91970 * 179.97438 * 5 4 3 7 7 C 1.38413 * 120.16320 * 0.02562 * 5 4 3 8 8 F 1.35097 * 120.06318 * 179.97438 * 7 5 4 9 9 C 1.39846 * 119.87329 * 359.97195 * 7 5 4 10 10 C 1.47585 * 120.14112 * 179.97438 * 9 7 5 11 11 O 1.21617 * 119.99926 * 312.48868 * 10 9 7 12 12 N 1.34776 * 120.00134 * 132.48098 * 10 9 7 13 13 C 1.36890 * 119.99928 * 5.65061 * 12 10 9 14 14 H 1.07999 * 119.99598 * 316.11870 * 13 12 10 15 15 C 1.39031 * 120.00145 * 136.11807 * 13 12 10 16 16 N 1.31376 * 119.99977 * 347.35567 * 15 13 12 17 17 Si 1.86803 * 120.00153 * 167.35907 * 15 13 12 18 18 H 1.48493 * 109.47250 * 59.99492 * 17 15 13 19 19 H 1.48501 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46632 * 299.99567 * 17 15 13 21 21 C 1.46504 * 120.00113 * 185.64428 * 12 10 9 22 22 C 1.52994 * 109.46942 * 84.14495 * 21 12 10 23 23 C 1.50708 * 109.46977 * 180.02562 * 22 21 12 24 24 O 1.20820 * 119.99939 * 0.02562 * 23 22 21 25 25 O 1.34226 * 119.99768 * 180.02562 * 23 22 21 26 26 C 1.38322 * 119.93430 * 179.72265 * 3 2 1 27 27 H 1.08999 * 109.47493 * 300.00238 * 1 2 3 28 28 H 1.09005 * 109.46788 * 60.00037 * 1 2 3 29 29 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.85364 * 359.97438 * 4 3 2 31 31 H 0.96997 * 120.00018 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.47039 * 204.14839 * 21 12 10 33 33 H 1.08998 * 109.47100 * 324.14559 * 21 12 10 34 34 H 1.09002 * 109.47433 * 299.99618 * 22 21 12 35 35 H 1.08998 * 109.47171 * 60.00107 * 22 21 12 36 36 H 0.96700 * 117.00147 * 180.02562 * 25 23 22 37 37 H 1.07994 * 120.08537 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2884 2.3755 0.0005 5 6 1.9087 3.6112 0.0011 6 17 0.9525 5.0600 0.0011 7 6 3.2903 3.6959 0.0005 8 9 3.8942 4.9043 0.0005 9 6 4.0597 2.5281 0.0001 10 6 5.5332 2.6115 -0.0011 11 8 6.0995 3.3561 -0.7783 12 7 6.2512 1.8627 0.8592 13 6 5.6235 0.9410 1.6532 14 1 4.7021 1.1984 2.1544 15 6 6.1719 -0.3264 1.8142 16 7 7.1422 -0.7274 1.0244 17 14 5.5292 -1.4590 3.1534 18 1 4.0843 -1.7190 2.9305 19 1 6.2753 -2.7425 3.1163 20 1 5.7178 -0.8155 4.4785 21 6 7.7036 2.0350 0.9446 22 6 8.0247 3.1964 1.8873 23 6 9.5188 3.3741 1.9747 24 8 10.2513 2.6467 1.3470 25 8 10.0355 4.3404 2.7499 26 6 3.4276 1.2822 0.0058 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2102 2.3151 0.0005 31 1 7.5246 -1.6118 1.1365 32 1 8.1561 1.1203 1.3276 33 1 8.1028 2.2504 -0.0465 34 1 7.5723 4.1111 1.5043 35 1 7.6255 2.9810 2.8784 36 1 10.9992 4.4159 2.7736 37 1 4.0161 0.3767 0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599420190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:33 Heat of formation + Delta-G solvation = -180.668904 kcal Electronic energy + Delta-G solvation = -28321.128932 eV Core-core repulsion = 23811.907145 eV Total energy + Delta-G solvation = -4509.221788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.066 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.44903 -40.10534 -39.82285 -38.72568 -37.15800 -36.10273 -35.79387 -35.07082 -32.15246 -31.47045 -30.14423 -29.58929 -27.19669 -25.35166 -24.68772 -22.96188 -22.16285 -20.63879 -19.56945 -18.46583 -17.77082 -17.12906 -17.02827 -16.51477 -16.15936 -16.02350 -15.72592 -15.47804 -15.18436 -14.97511 -14.57924 -14.42558 -13.93756 -13.72565 -13.26743 -12.97536 -12.82721 -12.75966 -12.58092 -12.46853 -12.12395 -11.90807 -11.79195 -11.32732 -11.20891 -11.15605 -10.98714 -10.98204 -10.88767 -10.52182 -10.44317 -10.20785 -10.13089 -9.32007 -8.88434 -8.63751 -7.94139 -7.68693 -6.52930 -4.34333 1.06366 1.29495 2.04258 2.63966 3.05400 3.14107 3.14630 3.22590 3.34169 3.46298 3.95332 3.99563 4.30967 4.57622 4.78956 4.91991 4.99311 5.10915 5.20653 5.29132 5.41275 5.54128 5.70741 5.76297 5.83757 5.93144 6.12943 6.26453 6.30852 6.59336 6.69076 6.78634 6.81869 7.18648 7.30462 7.41932 7.71305 8.15709 8.27840 8.85253 9.18399 9.63939 10.48827 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.004726 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.070986 B = 5922.831096 C = 8107.224438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.113 3.887 4 C -0.171 4.171 5 C -0.050 4.050 6 Cl -0.058 7.058 7 C 0.107 3.893 8 F -0.118 7.118 9 C -0.072 4.072 10 C 0.515 3.485 11 O -0.579 6.579 12 N -0.422 5.422 13 C -0.356 4.356 14 H 0.092 0.908 15 C 0.052 3.948 16 N -0.851 5.851 17 Si 0.913 3.087 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.133 3.867 22 C -0.128 4.128 23 C 0.484 3.516 24 O -0.513 6.513 25 O -0.524 6.524 26 C -0.055 4.055 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.276 0.724 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.402 0.598 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 2.980 2.436 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.067 3.933 4 C -0.191 4.191 5 C -0.078 4.078 6 Cl -0.029 7.029 7 C 0.086 3.914 8 F -0.097 7.097 9 C -0.076 4.076 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.139 5.139 13 C -0.484 4.484 14 H 0.110 0.890 15 C -0.157 4.157 16 N -0.485 5.485 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.196 1.196 21 C 0.009 3.991 22 C -0.167 4.167 23 C 0.326 3.674 24 O -0.401 6.401 25 O -0.336 6.336 26 C -0.074 4.074 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.259 0.741 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.655 2.885 1.839 10.243 hybrid contribution 0.030 -0.095 0.808 0.814 sum -9.625 2.791 2.647 10.365 Atomic orbital electron populations 1.23081 0.78730 1.03988 1.01253 1.86178 1.20997 1.25804 1.88866 1.18742 0.92020 0.83830 0.98713 1.20916 1.00547 0.89775 1.07819 1.20365 0.89518 0.88694 1.09216 1.98355 1.71177 1.36313 1.97085 1.17249 0.88181 0.81067 1.04920 1.91536 1.83383 1.41170 1.93575 1.19858 0.95539 0.90917 1.01286 1.17973 0.85390 0.84410 0.81987 1.90711 1.71306 1.43620 1.40683 1.43174 1.05350 1.32520 1.32848 1.19403 1.10265 0.91635 1.27073 0.89034 1.25499 0.96228 0.97117 0.96841 1.69847 1.24384 1.19868 1.34401 0.86196 0.79561 0.79244 0.81108 1.19063 1.20664 1.19590 1.21169 0.82458 0.97214 0.98263 1.21883 0.86788 1.03434 1.04624 1.23694 0.92740 0.76198 0.74720 1.90708 1.62232 1.44230 1.42929 1.84587 1.29668 1.54153 1.65145 1.20971 0.90757 0.99065 0.96588 0.92625 0.92682 0.88191 0.83944 0.91386 0.86748 0.91284 0.88281 0.87649 0.74057 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.42 10.49 -19.59 -0.21 -4.62 16 3 C 0.11 1.79 6.68 -39.30 -0.26 1.53 16 4 C -0.17 -2.42 8.81 -39.33 -0.35 -2.76 16 5 C -0.05 -0.80 6.32 -39.51 -0.25 -1.05 16 6 Cl -0.06 -0.81 28.60 -51.86 -1.48 -2.29 16 7 C 0.11 2.06 7.23 -38.92 -0.28 1.77 16 8 F -0.12 -2.41 16.02 2.25 0.04 -2.38 16 9 C -0.07 -1.49 5.15 -104.93 -0.54 -2.03 16 10 C 0.51 12.26 6.96 -12.45 -0.09 12.18 16 11 O -0.58 -15.17 16.23 5.26 0.09 -15.09 16 12 N -0.42 -9.95 2.49 -115.98 -0.29 -10.24 16 13 C -0.36 -8.21 6.53 -15.00 -0.10 -8.31 16 14 H 0.09 2.04 6.91 -52.49 -0.36 1.68 16 15 C 0.05 1.20 5.06 -17.45 -0.09 1.11 16 16 N -0.85 -21.16 11.48 55.50 0.64 -20.52 16 17 Si 0.91 18.16 29.57 -169.99 -5.03 13.13 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C 0.13 3.05 4.18 -4.04 -0.02 3.03 16 22 C -0.13 -2.46 6.09 -27.88 -0.17 -2.63 16 23 C 0.48 8.69 8.33 36.01 0.30 8.99 16 24 O -0.51 -10.72 16.74 -18.75 -0.31 -11.03 16 25 O -0.52 -7.35 13.42 -39.25 -0.53 -7.88 16 26 C -0.05 -1.03 7.92 -39.00 -0.31 -1.34 16 27 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.55 6.27 -52.49 -0.33 1.22 16 31 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.11 2.83 5.73 -51.93 -0.30 2.53 16 33 H 0.07 1.72 7.49 -51.93 -0.39 1.33 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.40 3.68 9.10 45.56 0.41 4.10 16 37 H 0.17 3.48 6.73 -52.49 -0.35 3.12 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -29.94 345.71 -5.55 -35.49 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -2.51 Total: 8.51 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.16 Total: 11.72 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.35 Total: -30.77 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.96 Total: -38.62 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.94 -5.55 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599420190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.177 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds