Wall clock time and date at job start Wed Apr 1 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40106 * 120.00059 * 2 1 4 4 C 1.34778 * 120.00113 * 74.99840 * 3 2 1 5 5 O 1.21570 * 119.99523 * 0.02562 * 4 3 2 6 6 C 1.47684 * 120.00128 * 180.02562 * 4 3 2 7 7 C 1.39669 * 120.16803 * 0.02562 * 6 4 3 8 8 C 1.37853 * 119.88082 * 179.97438 * 7 6 4 9 9 S 1.76196 * 119.89327 * 180.02562 * 8 7 6 10 10 O 1.42103 * 106.39862 * 336.46326 * 9 8 7 11 11 O 1.42095 * 106.40437 * 203.54157 * 9 8 7 12 12 C 1.76199 * 107.21610 * 89.99910 * 9 8 7 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99836 * 179.72181 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28505 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27572 * 14 12 9 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.38469 * 120.21503 * 0.27586 * 8 7 6 21 21 C 1.38204 * 120.34026 * 359.45034 * 20 8 7 22 22 C 1.38326 * 120.11634 * 0.54826 * 21 20 8 23 23 F 1.35099 * 120.10828 * 179.70788 * 22 21 20 24 24 C 1.34772 * 120.00195 * 180.02562 * 2 1 3 25 25 N 1.34783 * 120.00394 * 179.97438 * 24 2 1 26 26 O 1.21584 * 119.99968 * 359.97438 * 24 2 1 27 27 H 1.09007 * 109.47187 * 89.99876 * 1 2 3 28 28 H 1.08998 * 109.47297 * 209.99644 * 1 2 3 29 29 H 1.09002 * 109.47306 * 329.99782 * 1 2 3 30 30 H 0.97004 * 120.00195 * 255.00637 * 3 2 1 31 31 H 1.08001 * 120.05952 * 0.02562 * 7 6 4 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 33 33 H 1.07998 * 119.82703 * 179.70376 * 20 8 7 34 34 H 1.08000 * 119.94009 * 180.25218 * 21 20 8 35 35 H 0.97005 * 119.99470 * 359.97438 * 25 24 2 36 36 H 0.96992 * 119.99966 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1655 1.2133 0.0000 4 6 2.2408 1.9480 1.1274 5 8 1.7012 1.5576 2.1444 6 6 2.9787 3.2273 1.1273 7 6 3.5995 3.6794 -0.0394 8 6 4.2863 4.8746 -0.0330 9 16 5.0689 5.4456 -1.5047 10 8 5.3037 4.2959 -2.3062 11 8 6.1020 6.3299 -1.0927 12 6 3.8917 6.4265 -2.3745 13 1 2.9024 6.5715 -1.9661 14 6 4.2354 7.0141 -3.5736 15 7 5.4402 6.8378 -4.0707 16 14 2.9899 8.0603 -4.4919 17 1 2.5775 9.2029 -3.6377 18 1 3.6017 8.5733 -5.7441 19 1 1.8002 7.2361 -4.8243 20 6 4.3675 5.6254 1.1277 21 6 3.7520 5.1894 2.2857 22 6 3.0592 3.9922 2.2950 23 9 2.4625 3.5633 3.4286 24 6 2.1388 -1.1671 -0.0005 25 7 3.4867 -1.1672 -0.0010 26 8 1.5309 -2.2201 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 2.5962 1.5247 -0.8115 31 1 3.5408 3.0940 -0.9451 32 1 5.6819 7.2509 -4.9145 33 1 4.9113 6.5585 1.1268 34 1 3.8161 5.7821 3.1862 35 1 3.9716 -0.3271 -0.0014 36 1 3.9716 -2.0072 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636583555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:49 Heat of formation + Delta-G solvation = -125.340988 kcal Electronic energy + Delta-G solvation = -27969.373235 eV Core-core repulsion = 23496.887103 eV Total energy + Delta-G solvation = -4472.486132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.08228 -40.84551 -39.60187 -38.33044 -36.04618 -35.55386 -34.25966 -33.78845 -33.30400 -32.77469 -30.82129 -30.74176 -26.91052 -26.35740 -24.53049 -23.19169 -21.86712 -20.64271 -19.52875 -18.94255 -18.37841 -17.78141 -17.52014 -16.97426 -16.56886 -16.25136 -15.96508 -15.55112 -15.37956 -15.07421 -14.99376 -14.71420 -14.54177 -14.15624 -14.09238 -13.78711 -13.27351 -13.25407 -13.03428 -12.58616 -12.51647 -12.13638 -11.73906 -11.44073 -11.33870 -10.97658 -10.75664 -10.59760 -10.55833 -10.47637 -10.06138 -9.95037 -9.89915 -9.42291 -9.38362 -9.25201 -9.08957 -8.95411 -6.91680 -5.57171 0.42124 0.79725 1.47475 1.78699 2.43265 2.87035 2.97011 3.02931 3.07306 3.11353 3.34862 3.89095 3.91385 4.06276 4.42152 4.46292 4.58139 4.84859 5.05189 5.07464 5.15501 5.29755 5.30944 5.50019 5.55501 5.61227 5.67241 5.89874 5.94156 6.11122 6.39868 6.53112 6.59893 6.65522 6.84726 7.10482 7.34331 7.71489 7.99877 8.29998 8.66205 10.03096 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.003679 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.635184 B = 7609.032676 C = 8613.102729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.422 5.422 3 N -0.528 5.528 4 C 0.567 3.433 5 O -0.505 6.505 6 C -0.202 4.202 7 C 0.036 3.964 8 C -0.662 4.662 9 S 2.602 3.398 10 O -0.979 6.979 11 O -0.976 6.976 12 C -1.003 5.003 13 H 0.106 0.894 14 C 0.134 3.866 15 N -0.839 5.839 16 Si 0.924 3.076 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.262 1.262 20 C 0.035 3.965 21 C -0.185 4.185 22 C 0.197 3.803 23 F -0.113 7.113 24 C 0.721 3.279 25 N -0.860 5.860 26 O -0.580 6.580 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.421 0.579 31 H 0.152 0.848 32 H 0.295 0.705 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.400 0.600 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 -5.371 6.817 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.252 5.252 3 N -0.281 5.281 4 C 0.355 3.645 5 O -0.379 6.379 6 C -0.208 4.208 7 C 0.016 3.984 8 C -0.741 4.741 9 S 2.782 3.218 10 O -0.976 6.976 11 O -0.973 6.973 12 C -1.137 5.137 13 H 0.125 0.875 14 C -0.085 4.085 15 N -0.468 5.468 16 Si 0.748 3.252 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.187 1.187 20 C 0.016 3.984 21 C -0.205 4.205 22 C 0.177 3.823 23 F -0.091 7.091 24 C 0.420 3.580 25 N -0.428 5.428 26 O -0.455 6.455 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.265 0.735 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.229 0.771 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.672 -6.578 7.321 10.895 hybrid contribution -0.796 0.943 -0.342 1.281 sum -5.468 -5.635 6.978 10.505 Atomic orbital electron populations 1.21834 0.75018 1.04260 1.02343 1.46282 1.04596 0.94686 1.79601 1.45033 1.54757 1.14453 1.13849 1.18373 0.79993 0.83319 0.82831 1.90869 1.45003 1.70475 1.31516 1.19738 1.08478 0.97201 0.95371 1.21005 0.88143 0.93096 0.96118 1.31869 1.15736 1.04297 1.22193 1.01321 0.74953 0.74353 0.71199 1.93350 1.85609 1.53010 1.65646 1.93362 1.56064 1.65348 1.82570 1.30027 1.15845 1.49342 1.18447 0.87542 1.24760 0.95698 0.93000 0.95091 1.69872 1.18536 1.38304 1.20086 0.86129 0.80520 0.80026 0.78573 1.18652 1.19933 1.18690 1.21180 0.89997 0.97660 0.89547 1.21299 1.01899 0.96160 1.01110 1.17791 0.91071 0.92255 0.81227 1.91605 1.80384 1.89312 1.47755 1.15806 0.82473 0.82519 0.77200 1.42962 1.05273 1.13075 1.81446 1.91001 1.67799 1.27964 1.58727 0.91955 0.89140 0.90564 0.73540 0.83099 0.89470 0.82288 0.83158 0.77084 0.75018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.17 10.51 59.84 0.63 1.80 16 2 N -0.42 -5.24 3.15 -72.07 -0.23 -5.47 16 3 N -0.53 -6.08 4.78 30.49 0.15 -5.94 16 4 C 0.57 7.91 7.76 -12.40 -0.10 7.82 16 5 O -0.51 -8.59 15.52 5.30 0.08 -8.50 16 6 C -0.20 -2.81 5.88 -104.91 -0.62 -3.43 16 7 C 0.04 0.52 9.01 -39.19 -0.35 0.16 16 8 C -0.66 -11.15 5.81 -39.64 -0.23 -11.38 16 9 S 2.60 58.41 4.65 -107.50 -0.50 57.91 16 10 O -0.98 -23.80 17.15 -57.17 -0.98 -24.78 16 11 O -0.98 -24.39 17.14 -57.17 -0.98 -25.37 16 12 C -1.00 -23.90 9.58 30.60 0.29 -23.61 16 13 H 0.11 2.28 7.81 -52.49 -0.41 1.87 16 14 C 0.13 3.31 5.46 -17.82 -0.10 3.21 16 15 N -0.84 -22.09 13.19 55.43 0.73 -21.36 16 16 Si 0.92 18.43 29.54 -169.99 -5.02 13.41 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C 0.03 0.51 9.51 -39.51 -0.38 0.13 16 21 C -0.19 -2.33 10.01 -39.56 -0.40 -2.72 16 22 C 0.20 2.77 7.29 -38.96 -0.28 2.48 16 23 F -0.11 -1.68 15.55 2.25 0.04 -1.65 16 24 C 0.72 9.64 8.67 -86.92 -0.75 8.88 16 25 N -0.86 -8.56 8.84 27.63 0.24 -8.32 16 26 O -0.58 -9.50 16.76 5.29 0.09 -9.41 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.42 3.97 6.86 -182.59 -1.25 2.72 16 31 H 0.15 1.88 5.95 -52.49 -0.31 1.56 16 32 H 0.29 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.16 2.13 7.60 -52.49 -0.40 1.73 16 34 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.40 3.47 7.87 -40.82 -0.32 3.15 16 36 H 0.42 3.39 8.93 -40.82 -0.36 3.03 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -34.94 342.10 -7.35 -42.30 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.84 Total: 8.66 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.28 Total: -16.65 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.89 Total: -41.08 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -1.79 Total: -68.06 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 58.41 SS G_CDS: -0.50 Total: 57.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.94 -7.35 -42.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636583555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.045 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds