Wall clock time and date at job start Wed Apr 1 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33857 * 124.51787 * 2 1 4 4 C 1.37411 * 115.10951 * 180.02562 * 3 2 1 5 5 C 1.36759 * 113.28619 * 0.02562 * 4 3 2 6 6 C 1.46393 * 125.45710 * 180.02562 * 5 4 3 7 7 O 1.21627 * 120.00661 * 359.97438 * 6 5 4 8 8 O 1.34904 * 119.99562 * 179.97438 * 6 5 4 9 9 C 1.45194 * 116.99843 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00179 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00019 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99883 * 175.70997 * 12 10 9 14 14 C 1.39482 * 119.83163 * 215.01767 * 13 12 10 15 15 C 1.36377 * 120.16824 * 179.76304 * 14 13 12 16 16 C 1.40863 * 119.82764 * 0.51295 * 15 14 13 17 17 C 1.41151 * 120.16526 * 179.71953 * 16 15 14 18 18 H 1.08004 * 120.00081 * 214.80516 * 17 16 15 19 19 C 1.39902 * 120.00024 * 34.80460 * 17 16 15 20 20 N 1.30865 * 120.00068 * 355.55674 * 19 17 16 21 21 Si 1.86802 * 120.00087 * 175.56198 * 19 17 16 22 22 H 1.48493 * 109.47482 * 89.99607 * 21 19 17 23 23 H 1.48505 * 109.47079 * 209.99807 * 21 19 17 24 24 H 1.48505 * 109.46989 * 329.99336 * 21 19 17 25 25 C 1.40874 * 119.67424 * 359.73901 * 16 15 14 26 26 C 1.36376 * 119.82506 * 0.02562 * 25 16 15 27 27 S 1.70609 * 124.51651 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47337 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47040 * 299.98606 * 1 2 3 30 30 H 1.08998 * 109.47334 * 59.98518 * 1 2 3 31 31 H 1.08002 * 122.44250 * 0.02562 * 3 2 1 32 32 H 1.08000 * 123.35784 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47982 * 300.00246 * 9 8 6 34 34 H 1.09003 * 109.47090 * 60.00529 * 9 8 6 35 35 H 0.97007 * 119.99869 * 355.71650 * 12 10 9 36 36 H 1.08006 * 119.91544 * 0.02562 * 14 13 12 37 37 H 1.08001 * 120.08661 * 180.25525 * 15 14 13 38 38 H 0.97002 * 120.00540 * 180.02562 * 20 19 17 39 39 H 1.07993 * 120.09095 * 179.97438 * 25 16 15 40 40 H 1.08001 * 119.91326 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2655 1.1029 0.0000 4 6 3.6212 0.8783 -0.0006 5 6 3.9492 -0.4494 -0.0016 6 6 5.3105 -0.9878 -0.0018 7 8 6.2635 -0.2321 -0.0016 8 8 5.5080 -2.3223 -0.0023 9 6 6.8842 -2.7850 -0.0031 10 6 6.9076 -4.2918 -0.0030 11 8 5.8668 -4.9144 -0.0028 12 7 8.0851 -4.9476 -0.0042 13 6 8.1084 -6.3368 0.0862 14 6 9.1361 -6.9695 0.7854 15 6 9.1630 -8.3296 0.8823 16 6 8.1553 -9.0960 0.2648 17 6 8.1794 -10.5044 0.3556 18 1 7.8372 -11.1050 -0.4743 19 6 8.6465 -11.1224 1.5205 20 7 9.1419 -10.3985 2.4917 21 14 8.5633 -12.9809 1.6897 22 1 9.8158 -13.5823 1.1656 23 1 8.4027 -13.3409 3.1214 24 1 7.4051 -13.4969 0.9166 25 6 7.1235 -8.4500 -0.4442 26 6 7.1073 -7.0890 -0.5283 27 16 2.4738 -1.4058 -0.0006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5136 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 1.8429 2.0968 0.0004 32 1 4.3545 1.6711 -0.0002 33 1 7.3921 -2.4135 -0.8932 34 1 7.3927 -2.4141 0.8868 35 1 8.9164 -4.4516 -0.0678 36 1 9.9102 -6.3806 1.2549 37 1 9.9571 -8.8179 1.4276 38 1 9.4662 -10.8270 3.2993 39 1 6.3477 -9.0311 -0.9205 40 1 6.3172 -6.5923 -1.0718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007748621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:33 Heat of formation + Delta-G solvation = -62.671812 kcal Electronic energy + Delta-G solvation = -25384.920046 eV Core-core repulsion = 21449.461021 eV Total energy + Delta-G solvation = -3935.459024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68747 -39.58470 -38.32633 -37.32244 -36.36101 -34.49114 -33.00627 -32.54614 -30.00746 -29.55457 -28.58589 -27.41884 -24.85999 -24.05383 -22.46818 -21.64526 -20.85362 -19.89645 -19.41169 -18.65270 -17.47928 -17.29691 -16.82423 -16.61679 -16.28785 -15.97531 -15.19347 -14.93574 -14.83753 -14.39347 -13.98965 -13.87386 -13.52401 -13.39884 -12.92834 -12.82058 -12.79247 -12.64596 -12.39436 -12.18292 -12.14372 -11.74260 -11.40721 -11.19224 -11.16173 -11.07693 -10.90374 -10.88483 -10.74947 -10.06590 -9.53533 -9.49412 -9.18221 -9.08970 -8.93546 -8.92358 -7.58271 -6.91821 -6.64580 -4.37340 0.04079 1.11812 1.58526 1.88202 2.13464 2.45893 2.65199 2.95196 3.05975 3.08756 3.12492 3.27218 3.64583 3.96258 4.33435 4.57961 4.66732 4.74345 4.82868 4.89540 4.96238 5.00166 5.05310 5.15662 5.45668 5.57661 5.62037 5.71420 5.94949 6.06955 6.16007 6.40273 6.67931 6.86142 7.03058 7.15364 7.25516 7.42417 7.60381 7.68053 7.81484 8.02875 8.17699 8.28058 8.55791 8.64735 8.89892 8.95858 10.26402 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.001872 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.307017 B =14957.638161 C =15900.766758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.200 4.200 3 C -0.166 4.166 4 C -0.038 4.038 5 C -0.272 4.272 6 C 0.542 3.458 7 O -0.502 6.502 8 O -0.327 6.327 9 C 0.054 3.946 10 C 0.499 3.501 11 O -0.508 6.508 12 N -0.645 5.645 13 C 0.000 4.000 14 C -0.118 4.118 15 C -0.142 4.142 16 C 0.101 3.899 17 C -0.459 4.459 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.811 5.811 21 Si 0.916 3.084 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.205 4.205 26 C -0.084 4.084 27 S 0.274 5.726 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 20.459 -3.291 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.320 4.320 3 C -0.196 4.196 4 C -0.072 4.072 5 C -0.390 4.390 6 C 0.386 3.614 7 O -0.392 6.392 8 O -0.242 6.242 9 C -0.024 4.024 10 C 0.284 3.716 11 O -0.382 6.382 12 N -0.289 5.289 13 C -0.091 4.091 14 C -0.138 4.138 15 C -0.162 4.162 16 C 0.098 3.902 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.146 4.146 20 N -0.438 5.438 21 Si 0.741 3.259 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.225 4.225 26 C -0.104 4.104 27 S 0.543 5.457 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.232 0.768 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.069 18.603 -3.037 21.859 hybrid contribution 0.910 1.193 0.293 1.529 sum -10.160 19.797 -2.744 22.420 Atomic orbital electron populations 1.20426 0.87162 1.03507 1.03493 1.24631 1.02162 0.98952 1.06285 1.19871 0.92275 0.99845 1.07612 1.20737 0.96489 0.94448 0.95562 1.23477 0.95169 0.97887 1.22502 1.19652 0.88143 0.80684 0.72932 1.90887 1.42409 1.59330 1.46583 1.86633 1.30293 1.23223 1.84049 1.22765 0.80895 0.93664 1.05026 1.19898 0.84911 0.87988 0.78846 1.90737 1.31955 1.68085 1.47464 1.42771 1.07357 1.06672 1.72138 1.17218 1.02813 0.79587 1.09519 1.20314 0.98060 0.95621 0.99801 1.21196 1.00228 0.91380 1.03363 1.17747 0.89116 0.93665 0.89655 1.19510 1.37230 0.91741 1.00523 0.90542 1.25893 0.92649 1.00698 0.95378 1.69753 1.31074 1.37240 1.05702 0.86184 0.79563 0.82015 0.78146 1.19509 1.20289 1.18696 1.20810 1.00019 0.93114 1.08588 1.20407 0.97522 0.93832 0.98631 1.83746 0.92249 1.04882 1.64775 0.90979 0.90034 0.90043 0.83618 0.82782 0.88140 0.88015 0.76817 0.88953 0.84951 0.91086 0.88487 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.33 36.01 0.37 -0.06 16 2 C -0.20 -1.55 6.28 -35.85 -0.23 -1.78 16 3 C -0.17 -1.27 9.99 -41.42 -0.41 -1.68 16 4 C -0.04 -0.36 10.01 -40.42 -0.40 -0.77 16 5 C -0.27 -3.15 6.45 -36.84 -0.24 -3.39 16 6 C 0.54 7.44 7.92 34.01 0.27 7.71 16 7 O -0.50 -7.45 16.64 -19.36 -0.32 -7.78 16 8 O -0.33 -4.87 9.61 -47.74 -0.46 -5.33 16 9 C 0.05 0.71 5.96 36.01 0.21 0.93 16 10 C 0.50 8.64 7.74 -10.98 -0.09 8.56 16 11 O -0.51 -11.03 13.92 -14.10 -0.20 -11.23 16 12 N -0.64 -10.95 5.30 -9.74 -0.05 -11.00 16 13 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 14 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 15 C -0.14 -3.60 8.62 -39.26 -0.34 -3.93 16 16 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 17 C -0.46 -12.16 9.02 -37.85 -0.34 -12.50 16 18 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 19 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 20 N -0.81 -20.93 10.60 55.55 0.59 -20.34 16 21 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 26 C -0.08 -1.99 8.61 -39.79 -0.34 -2.34 16 27 S 0.27 2.75 22.85 -107.50 -2.46 0.29 16 28 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 5.08 8.82 -40.82 -0.36 4.72 16 36 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.11 2.52 6.22 -52.49 -0.33 2.20 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -32.24 367.88 -10.26 -42.50 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.36 Total: 8.10 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.52 Total: -14.61 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.54 Total: -31.34 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.98 Total: -24.33 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.46 Total: 0.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.24 -10.26 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007748621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.176 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds