Wall clock time and date at job start Wed Apr 1 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47248 * 275.25490 * 3 2 1 5 5 H 1.48503 * 109.47228 * 35.25343 * 3 2 1 6 6 H 1.48503 * 109.47494 * 155.25654 * 3 2 1 7 7 C 1.38896 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99379 * 1.40429 * 7 2 1 9 9 N 1.37139 * 120.00327 * 181.40619 * 7 2 1 10 10 C 1.34769 * 120.00008 * 125.54590 * 9 7 2 11 11 O 1.21277 * 120.00134 * 183.37573 * 10 9 7 12 12 C 1.50697 * 120.00176 * 3.38353 * 10 9 7 13 13 O 1.45200 * 109.47537 * 174.99618 * 12 10 9 14 14 C 1.34228 * 117.00520 * 184.90887 * 13 12 10 15 15 O 1.20831 * 119.99690 * 5.08828 * 14 13 12 16 16 C 1.50692 * 120.00341 * 185.08467 * 14 13 12 17 17 C 1.50705 * 109.47185 * 180.02562 * 16 14 13 18 18 C 1.33389 * 125.20118 * 89.99801 * 17 16 14 19 19 C 1.38426 * 114.91754 * 179.97438 * 18 17 16 20 20 C 1.33386 * 114.92265 * 0.02562 * 19 18 17 21 21 S 1.75878 * 125.20210 * 269.69104 * 17 16 14 22 22 C 1.39785 * 119.99714 * 305.55282 * 9 7 2 23 23 C 1.38958 * 120.08276 * 351.67447 * 22 9 7 24 24 C 1.38083 * 119.92779 * 179.97438 * 23 22 9 25 25 C 1.38310 * 120.07222 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.16063 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.07621 * 359.97438 * 26 25 24 28 28 H 0.96997 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47071 * 294.99615 * 12 10 9 30 30 H 1.09003 * 109.47109 * 54.99591 * 12 10 9 31 31 H 1.09004 * 109.46900 * 300.00258 * 16 14 13 32 32 H 1.08998 * 109.47236 * 60.00196 * 16 14 13 33 33 H 1.07995 * 122.54436 * 359.96156 * 18 17 16 34 34 H 1.07997 * 122.53569 * 180.02562 * 19 18 17 35 35 H 1.08001 * 125.20707 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.03940 * 359.70778 * 23 22 9 37 37 H 1.07991 * 119.96600 * 179.97438 * 24 23 22 38 38 H 1.08001 * 119.91556 * 179.97438 * 25 24 23 39 39 H 1.08001 * 119.96251 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.04211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3846 2.1105 -1.3942 5 1 1.5056 2.6181 0.8081 6 1 3.5969 1.4107 0.5860 7 6 2.0087 -1.2028 0.0005 8 1 1.4689 -2.1380 -0.0220 9 7 3.3798 -1.2030 0.0297 10 6 4.0334 -1.8928 0.9853 11 8 5.2435 -1.8436 1.0484 12 6 3.2606 -2.7254 1.9756 13 8 4.1875 -3.4579 2.8198 14 6 3.6583 -4.3289 3.6932 15 8 2.4691 -4.5427 3.6880 16 6 4.5473 -5.0403 4.6803 17 6 3.7130 -5.9554 5.5392 18 6 3.4360 -7.2302 5.2612 19 6 2.6487 -7.8742 6.2001 20 6 2.2859 -7.1222 7.2403 21 16 2.9619 -5.5079 7.0653 22 6 4.0993 -0.4876 -0.9318 23 6 3.4401 0.0801 -2.0153 24 6 4.1540 0.7866 -2.9629 25 6 5.5236 0.9300 -2.8342 26 6 6.1831 0.3663 -1.7571 27 6 5.4755 -0.3415 -0.8057 28 1 -0.4850 0.8400 0.0004 29 1 2.6428 -2.0742 2.5939 30 1 2.6235 -3.4290 1.4397 31 1 5.2918 -5.6268 4.1418 32 1 5.0495 -4.3070 5.3113 33 1 3.7983 -7.7226 4.3709 34 1 2.3507 -8.9072 6.0981 35 1 1.6749 -7.4551 8.0663 36 1 2.3712 -0.0347 -2.1186 37 1 3.6424 1.2278 -3.8055 38 1 6.0795 1.4827 -3.5770 39 1 7.2526 0.4806 -1.6595 40 1 5.9911 -0.7818 0.0349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023866471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:58 Heat of formation + Delta-G solvation = -41.199864 kcal Electronic energy + Delta-G solvation = -26764.244298 eV Core-core repulsion = 22829.716367 eV Total energy + Delta-G solvation = -3934.527931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09203 -41.42991 -39.32074 -38.73474 -37.49363 -37.00280 -34.26333 -33.47896 -31.78308 -31.56681 -29.45455 -28.05388 -27.19303 -24.59930 -23.73114 -23.08787 -22.13377 -21.41247 -20.21263 -20.04431 -18.97421 -18.40252 -17.94643 -17.80737 -17.62123 -17.34035 -16.93177 -16.45624 -16.22476 -15.86221 -15.39317 -15.03396 -14.88829 -14.69794 -14.40441 -14.21441 -14.08532 -13.91121 -13.75474 -13.61930 -13.45142 -13.30011 -13.18849 -12.66904 -12.54072 -12.50010 -12.09290 -11.91852 -11.91240 -11.72270 -11.67614 -11.32488 -10.94185 -10.25610 -9.67949 -9.67179 -9.39520 -8.92496 -8.58706 -6.62146 -0.03648 0.35370 0.51519 0.68229 1.05239 1.08560 1.22062 1.27227 1.29028 1.38269 1.62454 1.87147 2.09592 2.53117 2.67417 3.04685 3.47320 3.57827 3.77899 4.04903 4.13396 4.14114 4.17497 4.23040 4.24300 4.45041 4.45408 4.65057 4.66322 4.71755 4.75113 4.81308 5.16956 5.19964 5.27724 5.34777 5.44959 5.53821 5.56102 5.63218 5.70257 5.88664 5.94515 6.32993 6.58555 6.73147 7.06088 7.35737 8.42852 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.002619 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.163326 B =10686.698209 C =11572.179060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.235 1.235 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.413 5.413 10 C 0.496 3.504 11 O -0.551 6.551 12 C 0.081 3.919 13 O -0.343 6.343 14 C 0.457 3.543 15 O -0.527 6.527 16 C -0.031 4.031 17 C -0.191 4.191 18 C -0.125 4.125 19 C -0.145 4.145 20 C -0.207 4.207 21 S 0.086 5.914 22 C 0.127 3.873 23 C -0.179 4.179 24 C -0.105 4.105 25 C -0.154 4.154 26 C -0.103 4.103 27 C -0.202 4.202 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.188 0.812 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -8.523 8.233 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.149 4.149 3 Si 0.744 3.256 4 H -0.158 1.158 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.500 4.500 8 H 0.107 0.893 9 N -0.125 5.125 10 C 0.288 3.712 11 O -0.433 6.433 12 C 0.005 3.995 13 O -0.259 6.259 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.070 4.070 17 C -0.309 4.309 18 C -0.156 4.156 19 C -0.175 4.175 20 C -0.343 4.343 21 S 0.350 5.650 22 C 0.032 3.968 23 C -0.200 4.200 24 C -0.123 4.123 25 C -0.173 4.173 26 C -0.121 4.121 27 C -0.222 4.222 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.205 0.795 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.856 -7.193 9.169 14.637 hybrid contribution -0.784 -0.524 -0.940 1.331 sum 8.071 -7.717 8.229 13.871 Atomic orbital electron populations 1.69695 1.07123 1.29747 1.45272 1.25889 0.95563 1.01029 0.92455 0.86257 0.78688 0.80035 0.80575 1.15846 1.21719 1.19954 1.18883 0.78180 0.95453 1.57525 0.89255 1.41285 1.06579 1.42654 1.21986 1.20550 0.87199 0.81945 0.81550 1.90245 1.14493 1.65692 1.72905 1.22301 0.90033 0.95126 0.92061 1.86473 1.40751 1.51354 1.47313 1.24461 0.88671 0.76917 0.79962 1.90705 1.18533 1.62786 1.69478 1.19874 0.95517 0.98044 0.93582 1.23928 1.07871 0.98406 1.00660 1.20461 1.00001 0.93737 1.01419 1.20447 1.00311 1.02653 0.94137 1.25986 1.07462 0.95689 1.05115 1.84337 1.48426 1.14333 1.17882 1.18729 0.92152 0.95599 0.90319 1.21041 1.00950 1.02542 0.95438 1.21256 0.95052 0.97802 0.98224 1.21441 0.94076 1.02206 0.99533 1.21453 1.00868 0.96089 0.93705 1.22780 0.92845 1.02836 1.03691 0.90375 0.88038 0.88428 0.82798 0.84388 0.82917 0.81873 0.79485 0.86242 0.83769 0.82671 0.83263 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.10 13.96 21.65 0.30 -47.79 16 2 C 0.06 3.07 4.61 84.91 0.39 3.46 16 3 Si 0.92 42.85 23.85 68.60 1.64 44.49 16 4 H -0.23 -10.13 6.14 99.48 0.61 -9.52 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.27 -13.56 6.48 99.48 0.64 -12.92 16 7 C -0.37 -19.49 8.01 84.02 0.67 -18.82 16 8 H 0.09 4.94 7.70 -2.91 -0.02 4.92 16 9 N -0.41 -20.25 2.30 -458.91 -1.06 -21.31 16 10 C 0.50 23.03 7.65 87.66 0.67 23.70 16 11 O -0.55 -26.02 12.92 15.73 0.20 -25.82 16 12 C 0.08 3.35 4.87 71.24 0.35 3.70 16 13 O -0.34 -12.39 9.76 -45.06 -0.44 -12.83 16 14 C 0.46 14.31 7.94 71.23 0.57 14.88 16 15 O -0.53 -19.91 15.69 21.95 0.34 -19.56 16 16 C -0.03 -0.65 6.31 29.10 0.18 -0.47 16 17 C -0.19 -4.22 5.00 24.59 0.12 -4.09 16 18 C -0.13 -2.52 10.05 21.22 0.21 -2.30 16 19 C -0.15 -2.58 10.18 21.22 0.22 -2.36 16 20 C -0.21 -3.65 11.23 66.72 0.75 -2.90 16 21 S 0.09 1.83 23.33 -56.49 -1.32 0.51 16 22 C 0.13 5.89 4.12 38.22 0.16 6.05 16 23 C -0.18 -7.76 5.57 22.41 0.12 -7.63 16 24 C -0.10 -3.66 9.76 22.25 0.22 -3.44 16 25 C -0.15 -4.70 10.04 22.30 0.22 -4.47 16 26 C -0.10 -3.45 10.04 22.25 0.22 -3.23 16 27 C -0.20 -8.56 9.03 22.41 0.20 -8.36 16 28 H 0.29 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.10 4.24 8.14 -2.39 -0.02 4.22 16 30 H 0.10 4.06 7.57 -2.39 -0.02 4.04 16 31 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.12 5.59 5.70 -2.91 -0.02 5.57 16 37 H 0.14 4.10 8.06 -2.92 -0.02 4.08 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.17 7.40 4.58 -58.42 -0.27 7.13 16 Total: -1.00 -67.13 352.59 5.62 -61.51 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.67 Total: 27.12 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.28 Total: -6.30 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.76 Total: -69.10 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: 0.11 Total: -58.22 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.64 Total: 44.49 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.32 Total: 0.51 kcal Total: -67.13 5.62 -61.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023866471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.306 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds