Wall clock time and date at job start Wed Apr 1 2020 04:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46976 * 2 1 4 4 N 1.46502 * 109.46619 * 119.99318 * 2 1 3 5 5 C 1.46491 * 120.00649 * 299.99881 * 4 2 1 6 6 C 1.50698 * 109.47539 * 275.00558 * 5 4 2 7 7 H 1.08003 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00174 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00274 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99901 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47288 * 60.00672 * 10 8 6 12 12 H 1.48506 * 109.47154 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47432 * 300.00307 * 10 8 6 14 14 S 1.65600 * 119.99460 * 120.00379 * 4 2 1 15 15 O 1.42100 * 106.40858 * 336.45942 * 14 4 2 16 16 O 1.42101 * 106.40259 * 203.53497 * 14 4 2 17 17 C 1.76202 * 107.22066 * 90.00040 * 14 4 2 18 18 C 1.38472 * 119.89258 * 89.99458 * 17 14 4 19 19 C 1.38201 * 120.35435 * 180.02562 * 18 17 14 20 20 C 1.38311 * 120.12273 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.11280 * 179.97438 * 20 19 18 22 22 C 1.39880 * 119.77158 * 359.97367 * 20 19 18 23 23 C 1.47566 * 120.17156 * 180.02562 * 22 20 19 24 24 O 1.21494 * 119.99913 * 359.72747 * 23 22 20 25 25 O 1.34732 * 120.00189 * 179.97438 * 23 22 20 26 26 C 1.37845 * 119.88367 * 270.23677 * 17 14 4 27 27 H 1.08995 * 109.47170 * 300.00646 * 1 2 3 28 28 H 1.08998 * 109.46935 * 60.00823 * 1 2 3 29 29 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47170 * 239.99354 * 2 1 3 31 31 H 1.08996 * 109.47391 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46964 * 299.99693 * 3 2 1 33 33 H 1.08995 * 109.47698 * 59.99677 * 3 2 1 34 34 H 1.09008 * 109.46902 * 35.00464 * 5 4 2 35 35 H 1.09003 * 109.47568 * 154.99797 * 5 4 2 36 36 H 0.96997 * 120.00349 * 179.97438 * 9 8 6 37 37 H 1.08005 * 119.81861 * 359.97438 * 18 17 14 38 38 H 1.08005 * 119.93652 * 179.97438 * 19 18 17 39 39 H 0.96692 * 117.00096 * 180.02562 * 25 23 22 40 40 H 1.07996 * 120.06882 * 0.03563 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6644 -0.1899 2.5268 6 6 2.6337 0.8907 2.9312 7 1 3.4337 1.1759 2.2640 8 6 2.4993 1.5154 4.1529 9 7 1.5255 1.1679 4.9657 10 14 3.7013 2.8545 4.6545 11 1 3.6396 3.9678 3.6737 12 1 3.3425 3.3620 6.0032 13 1 5.0777 2.2980 4.6856 14 16 2.9704 -2.0369 1.0444 15 8 2.6905 -2.5840 -0.2368 16 8 2.8228 -2.7710 2.2521 17 6 4.6445 -1.4893 0.9967 18 6 5.3636 -1.3647 2.1734 19 6 6.6770 -0.9355 2.1471 20 6 7.2824 -0.6267 0.9424 21 9 8.5662 -0.2067 0.9169 22 6 6.5607 -0.7508 -0.2494 23 6 7.1980 -0.4243 -1.5397 24 8 8.3508 -0.0418 -1.5683 25 8 6.4999 -0.5455 -2.6857 26 6 5.2322 -1.1817 -0.2116 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.6539 0.2182 2.5045 35 1 1.7103 -1.0072 3.2466 36 1 1.4312 1.6071 5.8253 37 1 4.8953 -1.6033 3.1169 38 1 7.2316 -0.8403 3.0690 39 1 6.9600 -0.3205 -3.5058 40 1 4.6676 -1.2755 -1.1275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036133578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:39 Heat of formation + Delta-G solvation = -182.648546 kcal Electronic energy + Delta-G solvation = -29577.189880 eV Core-core repulsion = 25205.759049 eV Total energy + Delta-G solvation = -4371.430831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18481 -40.43598 -38.69124 -37.06968 -36.78516 -36.25168 -35.41841 -32.91175 -31.80051 -30.99202 -30.72871 -27.08911 -26.60327 -25.03904 -23.37384 -22.92320 -21.92498 -20.43878 -18.82253 -18.17319 -17.99478 -17.44960 -17.00158 -16.60012 -16.52658 -16.19152 -16.09296 -15.37672 -15.26744 -14.59586 -14.46067 -13.93548 -13.68575 -13.60974 -13.40929 -13.33310 -13.05105 -12.69708 -12.41681 -12.20250 -11.94884 -11.84836 -11.75947 -11.59646 -11.54841 -11.29248 -11.17083 -11.06209 -10.96063 -10.87967 -10.64313 -10.57591 -10.38917 -9.99863 -9.70307 -9.41169 -9.28384 -8.56371 -8.17712 -6.19247 -4.25107 0.29138 0.68143 0.92372 2.24628 2.71062 3.16631 3.19205 3.26258 3.28104 3.53423 3.82614 4.15049 4.29078 4.33485 4.63627 4.78407 5.02689 5.12247 5.14846 5.25609 5.32890 5.60237 5.61491 5.65052 5.67441 5.89151 5.90859 5.97312 6.11638 6.22448 6.23462 6.41067 6.48366 6.50147 6.70409 7.04395 7.28846 7.33175 7.55396 7.66002 7.77490 8.06201 8.79080 9.40709 10.88469 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.005562 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.035385 B = 5033.114960 C = 6288.186621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 C -0.159 4.159 4 N -0.973 5.973 5 C 0.241 3.759 6 C -0.541 4.541 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.886 3.114 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 S 2.689 3.311 15 O -0.972 6.972 16 O -0.951 6.951 17 C -0.693 4.693 18 C 0.068 3.932 19 C -0.187 4.187 20 C 0.209 3.791 21 F -0.111 7.111 22 C -0.197 4.197 23 C 0.532 3.468 24 O -0.506 6.506 25 O -0.507 6.507 26 C 0.064 3.936 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.265 0.735 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.416 0.584 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -3.038 -10.581 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 C -0.217 4.217 4 N -0.813 5.813 5 C 0.120 3.880 6 C -0.580 4.580 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.525 5.525 10 Si 0.714 3.286 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 S 2.777 3.223 15 O -0.962 6.962 16 O -0.941 6.941 17 C -0.777 4.777 18 C 0.049 3.951 19 C -0.206 4.206 20 C 0.189 3.811 21 F -0.089 7.089 22 C -0.200 4.200 23 C 0.376 3.624 24 O -0.395 6.395 25 O -0.319 6.319 26 C 0.045 3.955 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.275 0.725 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.907 -3.828 -10.076 11.843 hybrid contribution 1.933 1.796 -0.062 2.640 sum 6.840 -2.032 -10.138 12.398 Atomic orbital electron populations 1.22087 0.95141 1.01928 1.02344 1.20719 0.94815 0.93921 0.86424 1.22216 1.00934 0.96030 1.02557 1.57505 1.62327 1.47233 1.14274 1.19288 0.97495 0.95553 0.75678 1.21544 1.14052 1.20356 1.02030 0.91830 1.24895 0.95423 0.96906 0.96295 1.69906 1.30846 1.41881 1.09835 0.86755 0.81589 0.82398 0.77901 1.20191 1.21171 1.20143 1.02093 0.73030 0.73931 0.73228 1.93527 1.83889 1.76776 1.42040 1.93571 1.85241 1.69010 1.46270 1.31545 1.28174 1.19425 0.98525 1.21184 0.91563 0.84161 0.98174 1.21286 0.96965 1.05519 0.96865 1.17888 0.78593 0.91418 0.93201 1.91613 1.34111 1.85927 1.97207 1.19047 0.96572 1.14562 0.89789 1.20440 0.83690 0.74024 0.84211 1.90948 1.17840 1.43082 1.87671 1.84558 1.48276 1.81661 1.17413 1.21088 0.91696 0.85012 0.97711 0.91205 0.92288 0.92752 0.89930 0.93131 0.93400 0.89527 0.93472 0.92868 0.92469 0.81848 0.82765 0.72484 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.15 2.32 3.24 -67.93 -0.22 2.10 16 3 C -0.16 -2.46 8.21 37.15 0.30 -2.16 16 4 N -0.97 -17.82 2.73 -108.58 -0.30 -18.11 16 5 C 0.24 5.30 5.00 -5.20 -0.03 5.27 16 6 C -0.54 -12.63 7.53 -34.44 -0.26 -12.89 16 7 H 0.06 1.44 7.07 -52.48 -0.37 1.07 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.56 13.29 55.43 0.74 -22.82 16 10 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 S 2.69 47.77 5.68 -107.50 -0.61 47.16 16 15 O -0.97 -17.47 15.84 -57.17 -0.91 -18.38 16 16 O -0.95 -19.37 15.82 -57.17 -0.90 -20.28 16 17 C -0.69 -11.02 5.97 -39.64 -0.24 -11.25 16 18 C 0.07 1.05 9.51 -39.51 -0.38 0.68 16 19 C -0.19 -2.61 10.01 -39.57 -0.40 -3.01 16 20 C 0.21 3.11 7.29 -38.94 -0.28 2.82 16 21 F -0.11 -1.72 15.55 2.25 0.04 -1.68 16 22 C -0.20 -2.87 5.88 -104.93 -0.62 -3.48 16 23 C 0.53 7.29 8.27 34.54 0.29 7.57 16 24 O -0.51 -8.15 16.13 -19.26 -0.31 -8.46 16 25 O -0.51 -5.10 12.68 -40.58 -0.51 -5.61 16 26 C 0.06 0.93 9.08 -39.17 -0.36 0.57 16 27 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 31 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.56 6.65 -51.93 -0.35 1.22 16 34 H 0.05 1.08 6.45 -51.92 -0.33 0.75 16 35 H 0.05 1.29 6.91 -51.93 -0.36 0.93 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.16 2.49 7.60 -52.48 -0.40 2.10 16 38 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.42 2.10 9.11 45.56 0.42 2.52 16 40 H 0.16 2.04 7.16 -52.49 -0.38 1.66 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -30.77 356.47 -8.07 -38.84 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.71 Total: 3.45 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.94 Total: -14.08 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.44 Total: -40.93 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -2.64 Total: -52.73 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -0.61 Total: 47.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.77 -8.07 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036133578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.810 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds