Wall clock time and date at job start Wed Apr 1 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00091 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99987 * 180.30376 * 4 3 2 6 6 C 1.38719 * 119.99961 * 359.43918 * 5 4 3 7 7 O 1.35981 * 120.00116 * 180.25997 * 6 5 4 8 8 S 1.52195 * 113.99889 * 270.29622 * 7 6 5 9 9 O 1.42100 * 104.27628 * 191.07169 * 8 7 6 10 10 O 1.42098 * 104.28086 * 318.92978 * 8 7 6 11 11 C 1.81404 * 104.44672 * 75.00349 * 8 7 6 12 12 C 1.53001 * 109.47103 * 179.97438 * 11 8 7 13 13 C 1.52998 * 109.47272 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47146 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99669 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99394 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00373 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46796 * 90.00108 * 18 16 14 20 20 H 1.48495 * 109.47396 * 210.00744 * 18 16 14 21 21 H 1.48502 * 109.46825 * 330.00724 * 18 16 14 22 22 C 1.38687 * 119.99738 * 0.56089 * 6 5 4 23 23 N 1.48006 * 119.99820 * 179.74503 * 22 6 5 24 24 O 1.21799 * 119.99950 * 179.97438 * 23 22 6 25 25 O 1.21807 * 120.00076 * 359.97438 * 23 22 6 26 26 C 1.38149 * 119.99976 * 359.71674 * 22 6 5 27 27 H 1.09006 * 109.47071 * 60.00312 * 1 2 3 28 28 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47412 * 300.00576 * 1 2 3 30 30 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00324 * 179.70489 * 5 4 3 32 32 H 1.08998 * 109.46634 * 299.99397 * 11 8 7 33 33 H 1.08998 * 109.47058 * 60.00001 * 11 8 7 34 34 H 1.09004 * 109.47454 * 299.99824 * 12 11 8 35 35 H 1.09001 * 109.47056 * 59.99608 * 12 11 8 36 36 H 1.09004 * 109.46981 * 299.99779 * 13 12 11 37 37 H 1.09001 * 109.47335 * 59.99858 * 13 12 11 38 38 H 0.97010 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99916 * 180.02562 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6782 -0.0010 7 8 3.9205 4.8898 -0.0019 8 16 4.2013 5.4404 -1.3926 9 8 5.0622 6.5476 -1.1640 10 8 4.6414 4.3111 -2.1344 11 6 2.5843 6.0044 -1.9911 12 6 2.7359 6.5869 -3.3977 13 6 1.3721 7.0620 -3.9027 14 6 1.5213 7.6352 -5.2885 15 1 2.4919 7.6587 -5.7614 16 6 0.4189 8.1306 -5.9519 17 7 0.5491 8.6303 -7.1614 18 14 -1.2598 8.0907 -5.1335 19 1 -1.4667 9.3456 -4.3671 20 1 -2.3139 7.9652 -6.1719 21 1 -1.3331 6.9294 -4.2109 22 6 4.0584 2.5150 -0.0004 23 7 5.5365 2.5925 0.0002 24 8 6.1998 1.5710 0.0011 25 8 6.0895 3.6778 -0.0002 26 6 3.4312 1.2841 0.0001 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2123 2.3185 -0.0005 31 1 1.3297 4.5113 -0.0121 32 1 1.8933 5.1619 -2.0189 33 1 2.1960 6.7711 -1.3206 34 1 3.4270 7.4294 -3.3696 35 1 3.1245 5.8206 -4.0684 36 1 0.6814 6.2192 -3.9310 37 1 0.9831 7.8282 -3.2321 38 1 -0.2266 8.9786 -7.6284 39 1 4.0194 0.3783 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068870598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:53 Heat of formation + Delta-G solvation = -112.085015 kcal Electronic energy + Delta-G solvation = -28727.699810 eV Core-core repulsion = 24346.956055 eV Total energy + Delta-G solvation = -4380.743756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.73785 -41.37845 -40.38379 -37.66978 -37.21654 -36.69342 -36.08916 -35.00434 -32.79219 -32.30153 -30.89743 -28.61610 -28.14596 -26.80557 -24.47103 -23.60124 -23.12072 -21.29473 -20.53856 -19.92280 -19.04513 -18.66290 -18.09698 -17.97347 -17.63610 -17.43125 -16.93685 -16.55745 -16.42723 -15.80575 -15.14546 -14.95347 -14.66077 -14.30058 -14.10607 -13.71988 -13.58321 -13.11249 -12.92410 -12.79653 -12.50338 -12.34169 -12.18037 -12.12980 -12.03219 -11.81340 -11.79334 -11.74248 -11.38116 -11.28042 -11.13470 -11.05650 -10.40131 -10.21012 -9.98246 -9.75672 -9.36319 -9.21799 -8.66700 -6.15655 -4.15616 -0.79817 -0.19184 0.37299 0.86997 0.96738 1.80723 2.36293 2.44861 3.18579 3.24825 3.27074 3.49168 3.54809 3.72340 3.87618 3.89337 4.10661 4.30074 4.31948 4.43005 4.48277 4.64340 4.74497 4.79762 4.83695 4.97517 5.11574 5.13041 5.17322 5.46912 5.53512 5.99565 6.06537 6.09316 6.32498 6.52965 6.99614 7.13973 7.38791 7.61850 8.39686 8.88845 9.44610 10.97625 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.003645 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.498999 B = 7679.911363 C = 9476.388856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.300 6.300 3 C 0.148 3.852 4 C -0.143 4.143 5 C -0.089 4.089 6 C 0.105 3.895 7 O -0.654 6.654 8 S 2.584 3.416 9 O -0.907 6.907 10 O -0.953 6.953 11 C -0.643 4.643 12 C -0.095 4.095 13 C -0.003 4.003 14 C -0.529 4.529 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.014 3.986 23 N 0.035 4.965 24 O -0.135 6.135 25 O -0.145 6.145 26 C -0.075 4.075 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -18.123 19.606 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.212 6.212 3 C 0.100 3.900 4 C -0.161 4.161 5 C -0.110 4.110 6 C 0.061 3.939 7 O -0.611 6.611 8 S 2.681 3.319 9 O -0.905 6.905 10 O -0.952 6.952 11 C -0.772 4.772 12 C -0.134 4.134 13 C -0.042 4.042 14 C -0.567 4.567 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.071 4.071 23 N 0.559 4.441 24 O -0.356 6.356 25 O -0.361 6.361 26 C -0.095 4.095 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.269 -18.271 19.678 27.050 hybrid contribution -1.434 0.593 0.152 1.559 sum -4.703 -17.678 19.830 26.979 Atomic orbital electron populations 1.23338 0.76614 1.05416 1.02239 1.86177 1.22681 1.24780 1.87566 1.18648 0.90939 0.85505 0.94901 1.21594 1.02145 0.90586 1.01808 1.21343 0.90741 1.00688 0.98185 1.17481 0.90680 0.79959 1.05805 1.85901 1.78604 1.37412 1.59202 1.05976 0.77882 0.75324 0.72680 1.93635 1.61714 1.53539 1.81643 1.93603 1.80085 1.50056 1.71434 1.30981 1.22332 1.12426 1.11467 1.21330 1.03182 1.00712 0.88217 1.19536 0.91239 0.96216 0.97202 1.21113 0.96885 1.40083 0.98648 0.90618 1.25024 0.99044 0.94571 0.94709 1.69911 1.30653 1.40702 1.12352 0.86776 0.84160 0.78880 0.79405 1.20132 1.21206 1.19226 1.20870 0.81137 0.94617 1.10433 1.43075 1.02256 1.00852 0.97930 1.94528 1.63546 1.25162 1.52315 1.94583 1.72558 1.16081 1.52901 1.20050 0.92760 0.97115 0.99572 0.91490 0.87040 0.91770 0.81839 0.81139 0.85477 0.84385 0.90516 0.90688 0.96241 0.96462 0.92539 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 101.05 0.99 1.03 16 2 O -0.30 -1.79 10.50 -19.69 -0.21 -2.00 16 3 C 0.15 1.06 6.69 -39.24 -0.26 0.80 16 4 C -0.14 -0.82 9.03 -39.45 -0.36 -1.17 16 5 C -0.09 -0.69 8.45 -39.45 -0.33 -1.02 16 6 C 0.10 1.25 4.79 -39.24 -0.19 1.06 16 7 O -0.65 -9.14 8.53 -55.16 -0.47 -9.61 16 8 S 2.58 41.43 4.38 -107.50 -0.47 40.96 16 9 O -0.91 -17.38 18.09 -67.04 -1.21 -18.60 16 10 O -0.95 -17.20 14.89 -69.91 -1.04 -18.24 16 11 C -0.64 -8.96 5.45 37.16 0.20 -8.76 16 12 C -0.10 -1.79 5.16 -26.73 -0.14 -1.93 16 13 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 14 C -0.53 -14.67 9.66 -34.44 -0.33 -15.00 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 18 Si 0.88 20.57 27.47 -169.99 -4.67 15.91 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 22 C 0.01 0.18 6.10 -79.82 -0.49 -0.30 16 23 N 0.04 0.56 4.20 34.02 0.14 0.70 16 24 O -0.14 -2.00 18.45 -29.46 -0.54 -2.54 16 25 O -0.14 -2.59 15.38 -39.18 -0.60 -3.19 16 26 C -0.08 -0.70 9.49 -39.45 -0.37 -1.07 16 27 H 0.07 0.11 7.66 -51.93 -0.40 -0.29 16 28 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.06 0.05 7.66 -51.93 -0.40 -0.35 16 30 H 0.16 0.34 6.29 -52.49 -0.33 0.01 16 31 H 0.17 0.81 7.46 -52.49 -0.39 0.42 16 32 H 0.13 1.39 6.57 -51.93 -0.34 1.05 16 33 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.18 1.35 7.61 -52.48 -0.40 0.95 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -37.61 347.63 -8.85 -46.47 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.30 Total: -4.06 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -1.49 Total: -24.72 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.92 Total: -25.62 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -4.08 Total: -54.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 41.43 SS G_CDS: -0.47 Total: 40.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.61 -8.85 -46.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068870598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.620 kcal (2) G-P(sol) polarization free energy of solvation -37.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds