Wall clock time and date at job start Wed Apr 1 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00091 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99987 * 180.30376 * 4 3 2 6 6 C 1.38719 * 119.99961 * 359.43918 * 5 4 3 7 7 O 1.35981 * 120.00116 * 180.25997 * 6 5 4 8 8 S 1.52195 * 113.99889 * 270.29622 * 7 6 5 9 9 O 1.42100 * 104.27628 * 191.07169 * 8 7 6 10 10 O 1.42098 * 104.28086 * 318.92978 * 8 7 6 11 11 C 1.81404 * 104.44672 * 75.00349 * 8 7 6 12 12 C 1.53001 * 109.47103 * 179.97438 * 11 8 7 13 13 C 1.52998 * 109.47272 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47146 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99669 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99394 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00373 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46796 * 90.00108 * 18 16 14 20 20 H 1.48495 * 109.47396 * 210.00744 * 18 16 14 21 21 H 1.48502 * 109.46825 * 330.00724 * 18 16 14 22 22 C 1.38687 * 119.99738 * 0.56089 * 6 5 4 23 23 N 1.48006 * 119.99820 * 179.74503 * 22 6 5 24 24 O 1.21799 * 119.99950 * 179.97438 * 23 22 6 25 25 O 1.21807 * 120.00076 * 359.97438 * 23 22 6 26 26 C 1.38149 * 119.99976 * 359.71674 * 22 6 5 27 27 H 1.09006 * 109.47071 * 60.00312 * 1 2 3 28 28 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47412 * 300.00576 * 1 2 3 30 30 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00324 * 179.70489 * 5 4 3 32 32 H 1.08998 * 109.46634 * 299.99397 * 11 8 7 33 33 H 1.08998 * 109.47058 * 60.00001 * 11 8 7 34 34 H 1.09004 * 109.47454 * 299.99824 * 12 11 8 35 35 H 1.09001 * 109.47056 * 59.99608 * 12 11 8 36 36 H 1.09004 * 109.46981 * 299.99779 * 13 12 11 37 37 H 1.09001 * 109.47335 * 59.99858 * 13 12 11 38 38 H 0.97010 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99916 * 180.02562 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6782 -0.0010 7 8 3.9205 4.8898 -0.0019 8 16 4.2013 5.4404 -1.3926 9 8 5.0622 6.5476 -1.1640 10 8 4.6414 4.3111 -2.1344 11 6 2.5843 6.0044 -1.9911 12 6 2.7359 6.5869 -3.3977 13 6 1.3721 7.0620 -3.9027 14 6 1.5213 7.6352 -5.2885 15 1 2.4919 7.6587 -5.7614 16 6 0.4189 8.1306 -5.9519 17 7 0.5491 8.6303 -7.1614 18 14 -1.2598 8.0907 -5.1335 19 1 -1.4667 9.3456 -4.3671 20 1 -2.3139 7.9652 -6.1719 21 1 -1.3331 6.9294 -4.2109 22 6 4.0584 2.5150 -0.0004 23 7 5.5365 2.5925 0.0002 24 8 6.1998 1.5710 0.0011 25 8 6.0895 3.6778 -0.0002 26 6 3.4312 1.2841 0.0001 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2123 2.3185 -0.0005 31 1 1.3297 4.5113 -0.0121 32 1 1.8933 5.1619 -2.0189 33 1 2.1960 6.7711 -1.3206 34 1 3.4270 7.4294 -3.3696 35 1 3.1245 5.8206 -4.0684 36 1 0.6814 6.2192 -3.9310 37 1 0.9831 7.8282 -3.2321 38 1 -0.2266 8.9786 -7.6284 39 1 4.0194 0.3783 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068870598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:52 Heat of formation + Delta-G solvation = -139.832296 kcal Electronic energy + Delta-G solvation = -28728.903023 eV Core-core repulsion = 24346.956055 eV Total energy + Delta-G solvation = -4381.946968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.72529 -42.27569 -41.01322 -38.54224 -38.27134 -37.81717 -37.37842 -36.60221 -34.31798 -33.42943 -31.52526 -30.28990 -28.57065 -27.58975 -25.77179 -24.71878 -23.96738 -22.50455 -21.90661 -20.74416 -20.10712 -19.67748 -19.21622 -19.07361 -18.62575 -18.53986 -18.25372 -17.43512 -16.92787 -16.89152 -16.28049 -15.95985 -15.74398 -15.58470 -14.93408 -14.76564 -14.45715 -14.19028 -14.11575 -13.77006 -13.70674 -13.57340 -13.47821 -13.39850 -13.32185 -12.97742 -12.73255 -12.64446 -12.59657 -12.49206 -12.27594 -12.23752 -11.85504 -11.65629 -11.42650 -11.32891 -11.02085 -10.76313 -9.82197 -8.28123 -6.35438 -1.74267 -1.13607 -0.42205 -0.05845 0.05637 0.81346 1.38961 1.42868 1.53921 1.82244 1.92343 2.38778 2.43952 2.65159 2.89021 3.07269 3.15814 3.37111 3.46102 3.52105 3.60703 3.76486 4.10795 4.23746 4.30182 4.32717 4.45407 4.47355 4.55659 4.61546 4.66695 4.74986 4.86110 4.90432 5.05211 5.30133 5.44663 5.62654 5.94979 6.20940 6.25729 6.73384 7.29339 8.89117 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.003645 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.498999 B = 7679.911363 C = 9476.388856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.309 6.309 3 C 0.161 3.839 4 C -0.119 4.119 5 C -0.078 4.078 6 C 0.064 3.936 7 O -0.652 6.652 8 S 2.587 3.413 9 O -0.958 6.958 10 O -0.985 6.985 11 C -0.623 4.623 12 C -0.103 4.103 13 C -0.002 4.002 14 C -0.548 4.548 15 H 0.025 0.975 16 C -0.002 4.002 17 N -0.955 5.955 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.226 1.226 22 C -0.012 4.012 23 N 0.034 4.966 24 O -0.119 6.119 25 O -0.219 6.219 26 C -0.082 4.082 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.214 0.786 31 H 0.211 0.789 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -20.100 22.081 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.222 6.222 3 C 0.112 3.888 4 C -0.137 4.137 5 C -0.098 4.098 6 C 0.020 3.980 7 O -0.610 6.610 8 S 2.688 3.312 9 O -0.956 6.956 10 O -0.984 6.984 11 C -0.753 4.753 12 C -0.142 4.142 13 C -0.041 4.041 14 C -0.586 4.586 15 H 0.043 0.957 16 C -0.198 4.198 17 N -0.596 5.596 18 Si 0.780 3.220 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.148 1.148 22 C -0.098 4.098 23 N 0.551 4.449 24 O -0.349 6.349 25 O -0.419 6.419 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.231 0.769 31 H 0.227 0.773 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.511 -20.144 22.176 31.145 hybrid contribution 0.104 0.909 -0.642 1.118 sum -8.407 -19.235 21.534 30.073 Atomic orbital electron populations 1.23757 0.74248 1.07096 1.03969 1.86202 1.25041 1.24106 1.86809 1.18711 0.90083 0.86812 0.93221 1.22169 1.04277 0.88841 0.98415 1.21898 0.88625 1.03130 0.96107 1.18113 0.92382 0.78643 1.08826 1.85845 1.79325 1.38534 1.57312 1.05699 0.78590 0.74250 0.72668 1.93563 1.64293 1.55075 1.82691 1.93547 1.81305 1.50967 1.72537 1.30772 1.21213 1.14804 1.08515 1.21203 1.01360 1.00420 0.91225 1.19514 0.93365 0.97179 0.94036 1.21560 0.95039 1.40473 1.01537 0.95683 1.26196 1.04553 0.93848 0.95252 1.70108 1.32283 1.42440 1.14723 0.85552 0.76952 0.80710 0.78778 1.19137 1.21462 1.14847 1.21129 0.78553 0.96583 1.13525 1.43567 1.04060 1.00259 0.97050 1.94457 1.65014 1.24874 1.50538 1.94582 1.74008 1.16623 1.56709 1.20238 0.94330 0.96097 0.99515 0.90074 0.85755 0.89510 0.76926 0.77253 0.81253 0.80635 0.91952 0.91680 0.93886 0.94443 0.92471 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.32 10.50 -93.35 -0.98 -3.30 16 3 C 0.16 1.62 6.69 22.49 0.15 1.77 16 4 C -0.12 -0.61 9.03 22.35 0.20 -0.41 16 5 C -0.08 -0.78 8.45 22.35 0.19 -0.59 16 6 C 0.06 1.41 4.79 22.49 0.11 1.52 16 7 O -0.65 -18.05 8.53 -59.42 -0.51 -18.56 16 8 S 2.59 83.69 4.38 -56.49 -0.25 83.45 16 9 O -0.96 -38.78 18.09 -118.57 -2.15 -40.92 16 10 O -0.99 -36.95 14.89 -115.83 -1.72 -38.68 16 11 C -0.62 -15.17 5.45 71.98 0.39 -14.78 16 12 C -0.10 -3.75 5.16 30.59 0.16 -3.59 16 13 C 0.00 -0.10 4.04 29.85 0.12 0.02 16 14 C -0.55 -30.70 9.66 25.60 0.25 -30.45 16 15 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 16 C 0.00 -0.12 5.47 84.65 0.46 0.35 16 17 N -0.96 -59.18 13.96 21.45 0.30 -58.88 16 18 Si 0.96 40.29 27.47 68.60 1.88 42.18 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.23 -7.96 6.54 99.48 0.65 -7.31 16 22 C -0.01 -0.31 6.10 36.46 0.22 -0.09 16 23 N 0.03 1.11 4.20 -46.27 -0.19 0.92 16 24 O -0.12 -3.71 18.45 18.89 0.35 -3.36 16 25 O -0.22 -8.56 15.38 28.17 0.43 -8.13 16 26 C -0.08 -1.38 9.49 22.35 0.21 -1.17 16 27 H 0.08 -0.26 7.66 -2.38 -0.02 -0.28 16 28 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.09 -0.44 7.66 -2.38 -0.02 -0.46 16 30 H 0.21 -0.98 6.29 -2.91 -0.02 -1.00 16 31 H 0.21 0.40 7.46 -2.91 -0.02 0.37 16 32 H 0.17 2.68 6.57 -2.39 -0.02 2.66 16 33 H 0.18 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.61 7.20 -2.38 -0.02 1.59 16 37 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 38 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.18 2.64 7.61 -2.91 -0.02 2.62 16 Total: -1.00 -91.78 347.63 1.79 -90.00 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.04 Total: 1.59 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 3.58 Total: -46.32 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.11 Total: -57.96 kcal Atomic # 8 Polarization: -108.36 SS G_CDS: -4.58 Total: -112.94 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.88 Total: 42.18 kcal Atomic # 16 Polarization: 83.69 SS G_CDS: -0.25 Total: 83.45 kcal Total: -91.78 1.79 -90.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068870598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.836 kcal (2) G-P(sol) polarization free energy of solvation -91.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds