Wall clock time and date at job start Wed Apr 1 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38558 * 120.07473 * 359.72346 * 3 2 1 5 5 C 1.38242 * 120.00055 * 179.76505 * 4 3 2 6 6 C 1.38253 * 120.14493 * 0.51369 * 5 4 3 7 7 N 1.48008 * 119.92825 * 179.71738 * 6 5 4 8 8 O 1.21796 * 120.00351 * 180.02562 * 7 6 5 9 9 O 1.21800 * 120.00019 * 0.02769 * 7 6 5 10 10 C 1.38240 * 120.14498 * 359.74259 * 6 5 4 11 11 C 1.38566 * 120.00159 * 0.02562 * 10 6 5 12 12 O 1.35987 * 120.07253 * 179.97438 * 11 10 6 13 13 S 1.52198 * 114.00318 * 270.01803 * 12 11 10 14 14 O 1.42098 * 104.27954 * 191.07441 * 13 12 11 15 15 O 1.42101 * 104.27579 * 318.93209 * 13 12 11 16 16 C 1.81400 * 104.44871 * 75.00234 * 13 12 11 17 17 C 1.52998 * 109.47138 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47076 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46971 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99746 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47058 * 89.99933 * 23 21 19 25 25 H 1.48501 * 109.47247 * 209.99685 * 23 21 19 26 26 H 1.48498 * 109.47243 * 329.99981 * 23 21 19 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 30 30 H 1.08000 * 120.00305 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.92859 * 180.25569 * 5 4 3 32 32 H 1.08000 * 120.00057 * 180.02562 * 10 6 5 33 33 H 1.09005 * 109.46739 * 299.99871 * 16 13 12 34 34 H 1.08992 * 109.47477 * 60.00082 * 16 13 12 35 35 H 1.09001 * 109.47251 * 299.99974 * 17 16 13 36 36 H 1.09007 * 109.47164 * 60.00005 * 17 16 13 37 37 H 1.08996 * 109.46821 * 299.99444 * 18 17 16 38 38 H 1.08993 * 109.46950 * 60.00195 * 18 17 16 39 39 H 0.97000 * 119.99564 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0058 5 6 1.9224 3.6057 -0.0009 6 6 3.3029 3.6799 -0.0009 7 7 3.9715 5.0003 -0.0019 8 8 5.1876 5.0672 -0.0024 9 8 3.3055 6.0201 -0.0023 10 6 4.0602 2.5234 -0.0005 11 6 3.4359 1.2863 -0.0006 12 8 4.1795 0.1478 -0.0007 13 16 4.5184 -0.3703 -1.3911 14 8 5.0499 -1.6680 -1.1617 15 8 3.3204 -0.1900 -2.1338 16 6 5.8128 0.7512 -1.9889 17 6 6.2427 0.3302 -3.3955 18 6 7.3341 1.2765 -3.9000 19 6 7.7571 0.8621 -5.2858 20 1 7.2941 0.0088 -5.7592 21 6 8.7357 1.5716 -5.9489 22 7 9.2998 2.6103 -5.3722 23 14 9.2606 1.0575 -7.6664 24 1 8.4208 1.7579 -8.6710 25 1 10.6862 1.4162 -7.8765 26 1 9.0920 -0.4101 -7.8170 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2147 2.3196 -0.0099 31 1 1.3342 4.5114 -0.0012 32 1 5.1385 2.5840 -0.0001 33 1 5.4261 1.7700 -2.0172 34 1 6.6705 0.7067 -1.3179 35 1 6.6292 -0.6887 -3.3677 36 1 5.3847 0.3751 -4.0664 37 1 6.9471 2.2951 -3.9281 38 1 8.1920 1.2320 -3.2293 39 1 9.9886 3.1092 -5.8386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068872633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:37 Heat of formation + Delta-G solvation = -118.756773 kcal Electronic energy + Delta-G solvation = -28507.173949 eV Core-core repulsion = 24126.140884 eV Total energy + Delta-G solvation = -4381.033065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.52922 -41.75205 -39.70755 -38.08697 -37.20275 -36.74052 -36.09722 -34.79757 -32.30146 -31.84319 -31.44964 -28.48680 -27.91518 -26.32883 -24.50464 -23.76048 -22.90223 -21.43791 -20.62059 -19.42202 -19.02084 -18.92298 -18.15910 -17.77457 -17.70233 -17.49991 -16.68939 -16.35859 -16.09657 -15.59208 -15.22038 -15.05411 -14.49837 -14.34671 -14.12555 -13.73709 -13.42205 -12.87297 -12.66913 -12.63118 -12.35864 -12.21246 -12.13232 -12.06546 -11.99852 -11.91922 -11.71957 -11.42634 -11.35098 -11.28387 -10.95173 -10.91801 -10.47063 -10.09180 -10.00006 -9.49393 -9.33112 -9.15936 -8.41796 -6.06060 -4.10005 -0.54259 -0.27715 0.38935 0.95352 1.04004 1.89393 2.30127 2.49462 3.30100 3.36448 3.39939 3.54380 3.65728 3.72254 3.92326 3.96305 4.05975 4.41232 4.45572 4.56855 4.57991 4.58967 4.87975 4.93255 4.93496 5.02478 5.08543 5.21778 5.30084 5.53873 5.71911 6.08981 6.15850 6.32071 6.36568 6.78986 7.42370 7.54347 7.63116 7.90777 8.30081 8.95857 9.54912 11.04997 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.003577 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.783356 B = 7825.756343 C = 9654.844035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.284 6.284 3 C 0.209 3.791 4 C -0.197 4.197 5 C 0.003 3.997 6 C -0.069 4.069 7 N 0.033 4.967 8 O -0.146 6.146 9 O -0.156 6.156 10 C -0.029 4.029 11 C 0.045 3.955 12 O -0.652 6.652 13 S 2.574 3.426 14 O -0.922 6.922 15 O -0.949 6.949 16 C -0.634 4.634 17 C -0.102 4.102 18 C 0.030 3.970 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.180 0.820 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.723 -0.106 15.495 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.194 6.194 3 C 0.158 3.842 4 C -0.216 4.216 5 C -0.016 4.016 6 C -0.153 4.153 7 N 0.554 4.446 8 O -0.364 6.364 9 O -0.371 6.371 10 C -0.050 4.050 11 C 0.002 3.998 12 O -0.610 6.610 13 S 2.673 3.327 14 O -0.920 6.920 15 O -0.948 6.948 16 C -0.763 4.763 17 C -0.141 4.141 18 C -0.008 4.008 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.272 -1.519 15.703 26.484 hybrid contribution 0.946 0.562 -1.062 1.529 sum -20.326 -0.956 14.642 25.069 Atomic orbital electron populations 1.23421 0.76265 1.05786 1.02291 1.86276 1.23186 1.24662 1.85242 1.19352 0.90521 0.86451 0.87897 1.21198 1.01743 0.89675 1.08985 1.21009 0.91424 0.99970 0.89220 1.20564 0.92949 0.83294 1.18508 1.43305 1.01249 1.02238 0.97814 1.94631 0.95196 1.93635 1.52914 1.94540 1.65299 1.23782 1.53520 1.21007 1.03426 0.88299 0.92248 1.16674 0.86305 0.82647 1.14219 1.85835 1.71584 1.44467 1.59089 1.06197 0.76838 0.76697 0.72995 1.93627 1.81161 1.35130 1.82111 1.93607 1.43448 1.86499 1.71198 1.30872 1.18001 1.15923 1.11525 1.21508 1.02217 1.02187 0.88190 1.19083 0.91917 0.93725 0.96099 1.21213 1.20943 1.13973 1.00597 0.92369 1.25017 0.96160 0.94927 0.98191 1.69957 1.26580 1.18730 1.37833 0.86555 0.77833 0.79008 0.84408 1.20578 1.21115 1.19751 0.86807 0.91534 0.91097 0.81505 0.81387 0.80236 0.85568 0.84276 0.91208 0.91395 0.96023 0.95860 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.89 9.73 -41.47 -0.40 -3.29 16 3 C 0.21 2.12 5.93 -39.12 -0.23 1.89 16 4 C -0.20 -1.30 9.04 -39.46 -0.36 -1.66 16 5 C 0.00 0.02 9.55 -39.57 -0.38 -0.35 16 6 C -0.07 -0.73 6.85 -79.95 -0.55 -1.28 16 7 N 0.03 0.43 4.45 33.96 0.15 0.58 16 8 O -0.15 -2.13 18.44 -29.46 -0.54 -2.68 16 9 O -0.16 -2.00 18.44 -29.46 -0.54 -2.54 16 10 C -0.03 -0.32 7.96 -39.46 -0.31 -0.63 16 11 C 0.05 0.54 4.81 -39.12 -0.19 0.35 16 12 O -0.65 -8.78 9.84 -54.20 -0.53 -9.32 16 13 S 2.57 39.82 5.17 -107.50 -0.56 39.26 16 14 O -0.92 -16.97 18.09 -67.04 -1.21 -18.19 16 15 O -0.95 -15.71 15.82 -68.52 -1.08 -16.80 16 16 C -0.63 -9.84 5.46 37.16 0.20 -9.64 16 17 C -0.10 -2.04 5.16 -26.73 -0.14 -2.17 16 18 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 19 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.14 7.68 -51.93 -0.40 -0.26 16 29 H 0.07 0.25 7.65 -51.93 -0.40 -0.15 16 30 H 0.17 0.44 6.30 -52.49 -0.33 0.11 16 31 H 0.17 0.80 7.60 -52.49 -0.40 0.40 16 32 H 0.18 1.76 7.04 -52.49 -0.37 1.39 16 33 H 0.13 1.75 6.60 -51.92 -0.34 1.40 16 34 H 0.14 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -36.83 356.01 -9.47 -46.29 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.32 Total: -4.02 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.51 Total: -25.38 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.89 Total: -25.26 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -4.32 Total: -52.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 39.82 SS G_CDS: -0.56 Total: 39.26 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.83 -9.47 -46.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068872633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.463 kcal (2) G-P(sol) polarization free energy of solvation -36.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds