Wall clock time and date at job start Wed Apr 1 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38558 * 120.07473 * 359.72346 * 3 2 1 5 5 C 1.38242 * 120.00055 * 179.76505 * 4 3 2 6 6 C 1.38253 * 120.14493 * 0.51369 * 5 4 3 7 7 N 1.48008 * 119.92825 * 179.71738 * 6 5 4 8 8 O 1.21796 * 120.00351 * 180.02562 * 7 6 5 9 9 O 1.21800 * 120.00019 * 0.02769 * 7 6 5 10 10 C 1.38240 * 120.14498 * 359.74259 * 6 5 4 11 11 C 1.38566 * 120.00159 * 0.02562 * 10 6 5 12 12 O 1.35987 * 120.07253 * 179.97438 * 11 10 6 13 13 S 1.52198 * 114.00318 * 270.01803 * 12 11 10 14 14 O 1.42098 * 104.27954 * 191.07441 * 13 12 11 15 15 O 1.42101 * 104.27579 * 318.93209 * 13 12 11 16 16 C 1.81400 * 104.44871 * 75.00234 * 13 12 11 17 17 C 1.52998 * 109.47138 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47076 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46971 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99746 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47058 * 89.99933 * 23 21 19 25 25 H 1.48501 * 109.47247 * 209.99685 * 23 21 19 26 26 H 1.48498 * 109.47243 * 329.99981 * 23 21 19 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 30 30 H 1.08000 * 120.00305 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.92859 * 180.25569 * 5 4 3 32 32 H 1.08000 * 120.00057 * 180.02562 * 10 6 5 33 33 H 1.09005 * 109.46739 * 299.99871 * 16 13 12 34 34 H 1.08992 * 109.47477 * 60.00082 * 16 13 12 35 35 H 1.09001 * 109.47251 * 299.99974 * 17 16 13 36 36 H 1.09007 * 109.47164 * 60.00005 * 17 16 13 37 37 H 1.08996 * 109.46821 * 299.99444 * 18 17 16 38 38 H 1.08993 * 109.46950 * 60.00195 * 18 17 16 39 39 H 0.97000 * 119.99564 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0058 5 6 1.9224 3.6057 -0.0009 6 6 3.3029 3.6799 -0.0009 7 7 3.9715 5.0003 -0.0019 8 8 5.1876 5.0672 -0.0024 9 8 3.3055 6.0201 -0.0023 10 6 4.0602 2.5234 -0.0005 11 6 3.4359 1.2863 -0.0006 12 8 4.1795 0.1478 -0.0007 13 16 4.5184 -0.3703 -1.3911 14 8 5.0499 -1.6680 -1.1617 15 8 3.3204 -0.1900 -2.1338 16 6 5.8128 0.7512 -1.9889 17 6 6.2427 0.3302 -3.3955 18 6 7.3341 1.2765 -3.9000 19 6 7.7571 0.8621 -5.2858 20 1 7.2941 0.0088 -5.7592 21 6 8.7357 1.5716 -5.9489 22 7 9.2998 2.6103 -5.3722 23 14 9.2606 1.0575 -7.6664 24 1 8.4208 1.7579 -8.6710 25 1 10.6862 1.4162 -7.8765 26 1 9.0920 -0.4101 -7.8170 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2147 2.3196 -0.0099 31 1 1.3342 4.5114 -0.0012 32 1 5.1385 2.5840 -0.0001 33 1 5.4261 1.7700 -2.0172 34 1 6.6705 0.7067 -1.3179 35 1 6.6292 -0.6887 -3.3677 36 1 5.3847 0.3751 -4.0664 37 1 6.9471 2.2951 -3.9281 38 1 8.1920 1.2320 -3.2293 39 1 9.9886 3.1092 -5.8386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068872633.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:36 Heat of formation + Delta-G solvation = -143.725967 kcal Electronic energy + Delta-G solvation = -28508.256694 eV Core-core repulsion = 24126.140884 eV Total energy + Delta-G solvation = -4382.115810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.43068 -42.64995 -40.51459 -38.82251 -38.50619 -37.72723 -37.40748 -36.57623 -34.26226 -32.58714 -32.22331 -29.84647 -28.91414 -27.10778 -25.88313 -25.11687 -23.67337 -22.71235 -22.06828 -20.45825 -19.95446 -19.57578 -19.33040 -18.87055 -18.69945 -18.49643 -18.32991 -17.37097 -16.98736 -16.73613 -16.51171 -16.09751 -15.78727 -15.69879 -14.70953 -14.61107 -14.51593 -14.29087 -14.15414 -13.79618 -13.66578 -13.47394 -13.44766 -13.35109 -13.08395 -12.79573 -12.77243 -12.70935 -12.54984 -12.48325 -12.36177 -12.32435 -12.22449 -11.83361 -11.43231 -11.15531 -10.75238 -10.59414 -10.08391 -8.23641 -6.35688 -1.39910 -1.32233 -0.49494 0.07208 0.16281 0.83141 1.39600 1.40652 1.52059 1.71474 1.78408 2.33066 2.40294 2.66974 3.05247 3.09617 3.10289 3.20152 3.31662 3.52772 3.63331 3.81236 3.92085 4.20501 4.24873 4.35522 4.37616 4.40758 4.50472 4.55717 4.74902 4.76867 4.79820 4.98658 5.15602 5.41910 5.57183 5.76487 5.79763 6.15962 6.39666 6.79952 7.34073 8.87942 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.003577 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.783356 B = 7825.756343 C = 9654.844035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.311 6.311 3 C 0.205 3.795 4 C -0.175 4.175 5 C 0.022 3.978 6 C -0.085 4.085 7 N 0.036 4.964 8 O -0.211 6.211 9 O -0.133 6.133 10 C -0.034 4.034 11 C 0.007 3.993 12 O -0.647 6.647 13 S 2.603 3.397 14 O -0.956 6.956 15 O -0.959 6.959 16 C -0.637 4.637 17 C -0.101 4.101 18 C 0.030 3.970 19 C -0.553 4.553 20 H 0.063 0.937 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.263 1.263 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.217 0.783 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.001 0.999 38 H 0.003 0.997 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.867 -0.125 15.454 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.222 6.222 3 C 0.153 3.847 4 C -0.194 4.194 5 C 0.002 3.998 6 C -0.169 4.169 7 N 0.552 4.448 8 O -0.414 6.414 9 O -0.358 6.358 10 C -0.055 4.055 11 C -0.037 4.037 12 O -0.605 6.605 13 S 2.701 3.299 14 O -0.954 6.954 15 O -0.958 6.958 16 C -0.765 4.765 17 C -0.140 4.140 18 C -0.008 4.008 19 C -0.591 4.591 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.789 3.211 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.187 1.187 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.233 0.767 31 H 0.220 0.780 32 H 0.195 0.805 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.300 -1.590 15.655 28.950 hybrid contribution 1.653 0.620 -0.943 2.001 sum -22.648 -0.970 14.712 27.024 Atomic orbital electron populations 1.23886 0.73521 1.07384 1.04601 1.86254 1.26133 1.24998 1.84792 1.19652 0.90023 0.87838 0.87155 1.21714 1.03666 0.87679 1.06341 1.21500 0.89935 1.01717 0.86600 1.20724 0.94113 0.81600 1.20451 1.43605 1.01040 1.03066 0.97111 1.94648 0.96233 1.94137 1.56408 1.94489 1.64923 1.24790 1.51607 1.21032 1.03718 0.88545 0.92177 1.17044 0.87377 0.81984 1.17267 1.85788 1.72076 1.45406 1.57224 1.05289 0.75993 0.75657 0.72926 1.93579 1.81683 1.37146 1.82999 1.93569 1.43683 1.86481 1.72052 1.30829 1.19331 1.17081 1.09271 1.21305 1.00801 1.01047 0.90828 1.18973 0.92832 0.93906 0.95134 1.21711 1.21218 1.14199 1.01974 0.91843 1.25963 0.96183 0.94847 1.02609 1.70085 1.27224 1.19923 1.39717 0.85453 0.77499 0.79077 0.79091 1.19657 1.20633 1.18700 0.85896 0.88347 0.89515 0.76679 0.77998 0.80484 0.84162 0.82772 0.90907 0.90786 0.98041 0.97829 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -5.57 9.73 -72.70 -0.71 -6.27 16 3 C 0.21 3.64 5.93 22.57 0.13 3.77 16 4 C -0.18 -1.54 9.04 22.35 0.20 -1.34 16 5 C 0.02 0.24 9.55 22.27 0.21 0.45 16 6 C -0.08 -1.66 6.85 36.38 0.25 -1.41 16 7 N 0.04 0.91 4.45 -46.46 -0.21 0.70 16 8 O -0.21 -6.54 18.44 18.89 0.35 -6.19 16 9 O -0.13 -3.20 18.44 18.89 0.35 -2.85 16 10 C -0.03 -0.73 7.96 22.35 0.18 -0.55 16 11 C 0.01 0.16 4.81 22.57 0.11 0.27 16 12 O -0.65 -17.38 9.84 -60.43 -0.59 -17.98 16 13 S 2.60 80.58 5.17 -56.49 -0.29 80.29 16 14 O -0.96 -35.54 18.09 -118.57 -2.15 -37.69 16 15 O -0.96 -31.14 15.82 -117.15 -1.85 -32.99 16 16 C -0.64 -20.20 5.46 71.98 0.39 -19.81 16 17 C -0.10 -4.12 5.16 30.60 0.16 -3.96 16 18 C 0.03 1.56 4.97 29.85 0.15 1.71 16 19 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 20 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 23 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.10 -0.07 7.68 -2.38 -0.02 -0.09 16 29 H 0.09 0.23 7.65 -2.39 -0.02 0.21 16 30 H 0.22 -0.28 6.30 -2.91 -0.02 -0.30 16 31 H 0.20 0.85 7.60 -2.91 -0.02 0.83 16 32 H 0.18 3.73 7.04 -2.91 -0.02 3.71 16 33 H 0.14 4.01 6.60 -2.39 -0.02 3.99 16 34 H 0.15 4.34 8.14 -2.39 -0.02 4.32 16 35 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -82.62 356.01 1.90 -80.72 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.10 Total: 2.71 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.59 Total: -50.53 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.08 Total: -55.66 kcal Atomic # 8 Polarization: -99.37 SS G_CDS: -4.60 Total: -103.97 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 80.58 SS G_CDS: -0.29 Total: 80.29 kcal Total: -82.62 1.90 -80.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068872633.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.009 kcal (2) G-P(sol) polarization free energy of solvation -82.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds