Wall clock time and date at job start Wed Apr 1 2020 02:59:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35991 * 117.00364 * 2 1
4 4 C 1.38569 * 120.06881 * 359.72285 * 3 2 1
5 5 C 1.38244 * 119.99626 * 179.76901 * 4 3 2
6 6 N 1.48003 * 119.92509 * 180.25701 * 5 4 3
7 7 O 1.21806 * 119.99831 * 180.25221 * 6 5 4
8 8 O 1.21796 * 120.00055 * 0.25080 * 6 5 4
9 9 C 1.38254 * 120.14707 * 0.50959 * 5 4 3
10 10 C 1.38253 * 120.14464 * 359.74633 * 9 5 4
11 11 C 1.38562 * 120.00018 * 359.97438 * 10 9 5
12 12 O 1.35987 * 120.07202 * 179.97438 * 11 10 9
13 13 S 1.52200 * 114.00281 * 270.01905 * 12 11 10
14 14 O 1.42100 * 104.28110 * 191.07083 * 13 12 11
15 15 O 1.42103 * 104.27808 * 318.93327 * 13 12 11
16 16 C 1.81408 * 104.44563 * 75.00092 * 13 12 11
17 17 C 1.52999 * 109.46985 * 180.02562 * 16 13 12
18 18 C 1.53000 * 109.47436 * 180.02562 * 17 16 13
19 19 C 1.50696 * 109.47425 * 179.97438 * 18 17 16
20 20 H 1.08001 * 119.99948 * 0.02562 * 19 18 17
21 21 C 1.37880 * 119.99964 * 179.97438 * 19 18 17
22 22 N 1.31513 * 119.99873 * 0.02562 * 21 19 18
23 23 Si 1.86794 * 119.99861 * 180.02562 * 21 19 18
24 24 H 1.48504 * 109.47430 * 60.00705 * 23 21 19
25 25 H 1.48509 * 109.47094 * 180.02562 * 23 21 19
26 26 H 1.48500 * 109.47424 * 300.00317 * 23 21 19
27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3
29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3
30 30 H 1.08001 * 120.00282 * 0.02562 * 4 3 2
31 31 H 1.07995 * 119.92869 * 179.72250 * 9 5 4
32 32 H 1.07996 * 119.99607 * 179.97438 * 10 9 5
33 33 H 1.08999 * 109.46783 * 300.00060 * 16 13 12
34 34 H 1.08990 * 109.47152 * 60.00281 * 16 13 12
35 35 H 1.09003 * 109.47456 * 300.00132 * 17 16 13
36 36 H 1.09001 * 109.47489 * 59.99550 * 17 16 13
37 37 H 1.09003 * 109.46845 * 300.00431 * 18 17 16
38 38 H 1.08999 * 109.46793 * 59.99623 * 18 17 16
39 39 H 0.97002 * 120.00051 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2117 0.0000
4 6 1.2933 2.3747 -0.0058
5 6 1.9225 3.6057 -0.0010
6 7 1.1164 4.8469 -0.0014
7 8 1.6695 5.9322 -0.0018
8 8 -0.0999 4.7832 -0.0014
9 6 3.3031 3.6798 -0.0010
10 6 4.0604 2.5231 -0.0005
11 6 3.4360 1.2862 0.0005
12 8 4.1796 0.1476 0.0004
13 16 4.5174 -0.3711 -1.3900
14 8 5.0491 -1.6688 -1.1605
15 8 3.3189 -0.1912 -2.1320
16 6 5.8114 0.7501 -1.9893
17 6 6.2403 0.3284 -3.3961
18 6 7.3322 1.2736 -3.9013
19 6 7.7551 0.8578 -5.2867
20 1 7.2912 0.0049 -5.7597
21 6 8.7335 1.5669 -5.9507
22 7 9.2981 2.6057 -5.3749
23 14 9.2572 1.0519 -7.6682
24 1 8.0878 1.1129 -8.5815
25 1 10.3171 1.9693 -8.1585
26 1 9.7835 -0.3362 -7.6300
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 0.5139 0.8900
30 1 0.2147 2.3196 -0.0099
31 1 3.7909 4.6432 -0.0017
32 1 5.1387 2.5838 -0.0010
33 1 5.4248 1.7688 -2.0178
34 1 6.6696 0.7058 -1.3189
35 1 6.6268 -0.6905 -3.3680
36 1 5.3819 0.3729 -4.0664
37 1 6.9462 2.2926 -3.9293
38 1 8.1905 1.2285 -3.2309
39 1 9.9867 3.1044 -5.8419
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068908734.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:40
Heat of formation + Delta-G solvation = -118.984065 kcal
Electronic energy + Delta-G solvation = -28245.880461 eV
Core-core repulsion = 23864.837540 eV
Total energy + Delta-G solvation = -4381.042921 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.085 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.67355 -41.81676 -39.65660 -38.08298 -37.24458 -36.93495 -36.13516 -34.86266
-32.38546 -32.02781 -31.23042 -28.30745 -27.99546 -26.82207 -24.17987 -23.42473
-23.34339 -21.39699 -20.58337 -20.13970 -19.18415 -18.75214 -18.00662 -17.85089
-17.74542 -17.49593 -16.66794 -16.28414 -16.08026 -15.79633 -15.14989 -15.03216
-14.55963 -14.46239 -14.03617 -13.69575 -13.56888 -12.82076 -12.69574 -12.47550
-12.36509 -12.28721 -12.24401 -12.12358 -12.00992 -11.91608 -11.90267 -11.56817
-11.48258 -11.40447 -10.99763 -10.96295 -10.53285 -10.17545 -10.05997 -9.52479
-9.28087 -9.17889 -8.47403 -6.12652 -4.16255 -0.90707 0.07661 0.26541
0.82828 0.88636 1.83132 2.37689 2.48392 3.27769 3.32157 3.34844
3.52175 3.63310 3.74399 3.90874 3.98462 4.11513 4.36330 4.42154
4.59637 4.63538 4.68262 4.85399 4.87404 4.97488 5.06022 5.11029
5.23856 5.26207 5.54709 5.65702 5.91734 6.10383 6.26267 6.43251
6.72563 7.24010 7.46253 7.55339 7.84333 8.23895 8.89350 9.48997
10.98464
Molecular weight = 345.09amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.003100 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.839795 B = 9030.356738 C =10569.012476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.286 6.286
3 C 0.161 3.839
4 C -0.139 4.139
5 C 0.006 3.994
6 N 0.026 4.974
7 O -0.142 6.142
8 O -0.154 6.154
9 C -0.072 4.072
10 C -0.090 4.090
11 C 0.095 3.905
12 O -0.657 6.657
13 S 2.575 3.425
14 O -0.921 6.921
15 O -0.946 6.946
16 C -0.633 4.633
17 C -0.103 4.103
18 C 0.031 3.969
19 C -0.530 4.530
20 H 0.058 0.942
21 C 0.059 3.941
22 N -0.894 5.894
23 Si 0.895 3.105
24 H -0.275 1.275
25 H -0.286 1.286
26 H -0.275 1.275
27 H 0.114 0.886
28 H 0.068 0.932
29 H 0.064 0.936
30 H 0.172 0.828
31 H 0.174 0.826
32 H 0.177 0.823
33 H 0.129 0.871
34 H 0.138 0.862
35 H 0.069 0.931
36 H 0.068 0.932
37 H 0.021 0.979
38 H 0.022 0.978
39 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.709 0.275 15.416 22.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.197 6.197
3 C 0.111 3.889
4 C -0.158 4.158
5 C -0.077 4.077
6 N 0.548 4.452
7 O -0.361 6.361
8 O -0.370 6.370
9 C -0.091 4.091
10 C -0.110 4.110
11 C 0.051 3.949
12 O -0.615 6.615
13 S 2.673 3.327
14 O -0.919 6.919
15 O -0.945 6.945
16 C -0.762 4.762
17 C -0.142 4.142
18 C -0.007 4.007
19 C -0.568 4.568
20 H 0.076 0.924
21 C -0.143 4.143
22 N -0.533 5.533
23 Si 0.723 3.277
24 H -0.201 1.201
25 H -0.212 1.212
26 H -0.201 1.201
27 H 0.132 0.868
28 H 0.087 0.913
29 H 0.083 0.917
30 H 0.189 0.811
31 H 0.191 0.809
32 H 0.195 0.805
33 H 0.147 0.853
34 H 0.156 0.844
35 H 0.088 0.912
36 H 0.087 0.913
37 H 0.039 0.961
38 H 0.040 0.960
39 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -16.543 -1.106 15.623 22.781
hybrid contribution 0.502 0.519 -1.059 1.282
sum -16.040 -0.588 14.563 21.673
Atomic orbital electron populations
1.23387 0.76496 1.05682 1.02207 1.86275 1.22918 1.23765 1.86769
1.18660 0.90292 0.85631 0.94329 1.20918 1.02806 0.88890 1.03227
1.20929 0.91699 0.84457 1.10651 1.43470 1.01378 1.02431 0.97922
1.94584 1.74306 1.14711 1.52462 1.94553 0.95436 1.93900 1.53093
1.20862 0.90209 1.01013 0.97044 1.21358 1.02725 0.88486 0.98441
1.17579 0.86506 0.83495 1.07284 1.85827 1.71500 1.45078 1.59085
1.06199 0.76875 0.76721 0.72898 1.93630 1.81175 1.35073 1.82040
1.93630 1.43330 1.86446 1.71063 1.30870 1.17878 1.16079 1.11401
1.21518 1.02242 1.02212 0.88269 1.19069 0.91845 0.93701 0.96085
1.21186 1.20956 1.14012 1.00638 0.92376 1.25008 0.96121 0.94877
0.98245 1.69935 1.26595 1.18753 1.38027 0.86604 0.78349 0.78538
0.84239 1.20096 1.21184 1.20080 0.86779 0.91300 0.91721 0.81064
0.80871 0.80550 0.85260 0.84366 0.91221 0.91309 0.96052 0.95962
0.92746
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.10 9.81 101.05 0.99 1.10 16
2 O -0.29 -3.17 9.72 -41.56 -0.40 -3.57 16
3 C 0.16 1.76 5.93 -39.12 -0.23 1.52 16
4 C -0.14 -1.26 8.54 -39.46 -0.34 -1.60 16
5 C 0.01 0.06 6.85 -79.95 -0.55 -0.49 16
6 N 0.03 0.29 4.45 33.96 0.15 0.44 16
7 O -0.14 -1.66 18.44 -29.46 -0.54 -2.21 16
8 O -0.15 -1.77 18.44 -29.46 -0.54 -2.32 16
9 C -0.07 -0.59 9.55 -39.57 -0.38 -0.97 16
10 C -0.09 -0.76 8.46 -39.46 -0.33 -1.09 16
11 C 0.09 1.06 4.81 -39.12 -0.19 0.88 16
12 O -0.66 -8.36 9.84 -54.19 -0.53 -8.89 16
13 S 2.57 37.98 5.17 -107.50 -0.56 37.43 16
14 O -0.92 -16.45 18.09 -67.04 -1.21 -17.67 16
15 O -0.95 -15.42 15.81 -68.55 -1.08 -16.51 16
16 C -0.63 -8.92 5.46 37.16 0.20 -8.72 16
17 C -0.10 -1.96 5.16 -26.73 -0.14 -2.10 16
18 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16
19 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16
20 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16
21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
22 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16
23 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16
24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16
25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16
26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
27 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16
28 H 0.07 0.38 7.65 -51.93 -0.40 -0.02 16
29 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16
30 H 0.17 1.16 5.85 -52.49 -0.31 0.85 16
31 H 0.17 1.06 7.60 -52.49 -0.40 0.66 16
32 H 0.18 0.98 7.49 -52.49 -0.39 0.59 16
33 H 0.13 1.51 6.60 -51.92 -0.34 1.17 16
34 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16
35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16
36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
LS Contribution 356.00 15.07 5.36 5.36
Total: -1.00 -35.43 356.00 -9.47 -44.89
By element:
Atomic # 1 Polarization: 0.43 SS G_CDS: -4.32 Total: -3.89 kcal
Atomic # 6 Polarization: -22.56 SS G_CDS: -1.51 Total: -24.07 kcal
Atomic # 7 Polarization: -25.54 SS G_CDS: 0.89 Total: -24.66 kcal
Atomic # 8 Polarization: -46.85 SS G_CDS: -4.32 Total: -51.17 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal
Atomic # 16 Polarization: 37.98 SS G_CDS: -0.56 Total: 37.43 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -35.43 -9.47 -44.89 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068908734.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.089 kcal
(2) G-P(sol) polarization free energy of solvation -35.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.984 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds