Wall clock time and date at job start Wed Apr 1 2020 02:59:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35991 * 117.00364 * 2 1
4 4 C 1.38569 * 120.06881 * 359.72285 * 3 2 1
5 5 C 1.38244 * 119.99626 * 179.76901 * 4 3 2
6 6 N 1.48003 * 119.92509 * 180.25701 * 5 4 3
7 7 O 1.21806 * 119.99831 * 180.25221 * 6 5 4
8 8 O 1.21796 * 120.00055 * 0.25080 * 6 5 4
9 9 C 1.38254 * 120.14707 * 0.50959 * 5 4 3
10 10 C 1.38253 * 120.14464 * 359.74633 * 9 5 4
11 11 C 1.38562 * 120.00018 * 359.97438 * 10 9 5
12 12 O 1.35987 * 120.07202 * 179.97438 * 11 10 9
13 13 S 1.52200 * 114.00281 * 270.01905 * 12 11 10
14 14 O 1.42100 * 104.28110 * 191.07083 * 13 12 11
15 15 O 1.42103 * 104.27808 * 318.93327 * 13 12 11
16 16 C 1.81408 * 104.44563 * 75.00092 * 13 12 11
17 17 C 1.52999 * 109.46985 * 180.02562 * 16 13 12
18 18 C 1.53000 * 109.47436 * 180.02562 * 17 16 13
19 19 C 1.50696 * 109.47425 * 179.97438 * 18 17 16
20 20 H 1.08001 * 119.99948 * 0.02562 * 19 18 17
21 21 C 1.37880 * 119.99964 * 179.97438 * 19 18 17
22 22 N 1.31513 * 119.99873 * 0.02562 * 21 19 18
23 23 Si 1.86794 * 119.99861 * 180.02562 * 21 19 18
24 24 H 1.48504 * 109.47430 * 60.00705 * 23 21 19
25 25 H 1.48509 * 109.47094 * 180.02562 * 23 21 19
26 26 H 1.48500 * 109.47424 * 300.00317 * 23 21 19
27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3
29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3
30 30 H 1.08001 * 120.00282 * 0.02562 * 4 3 2
31 31 H 1.07995 * 119.92869 * 179.72250 * 9 5 4
32 32 H 1.07996 * 119.99607 * 179.97438 * 10 9 5
33 33 H 1.08999 * 109.46783 * 300.00060 * 16 13 12
34 34 H 1.08990 * 109.47152 * 60.00281 * 16 13 12
35 35 H 1.09003 * 109.47456 * 300.00132 * 17 16 13
36 36 H 1.09001 * 109.47489 * 59.99550 * 17 16 13
37 37 H 1.09003 * 109.46845 * 300.00431 * 18 17 16
38 38 H 1.08999 * 109.46793 * 59.99623 * 18 17 16
39 39 H 0.97002 * 120.00051 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2117 0.0000
4 6 1.2933 2.3747 -0.0058
5 6 1.9225 3.6057 -0.0010
6 7 1.1164 4.8469 -0.0014
7 8 1.6695 5.9322 -0.0018
8 8 -0.0999 4.7832 -0.0014
9 6 3.3031 3.6798 -0.0010
10 6 4.0604 2.5231 -0.0005
11 6 3.4360 1.2862 0.0005
12 8 4.1796 0.1476 0.0004
13 16 4.5174 -0.3711 -1.3900
14 8 5.0491 -1.6688 -1.1605
15 8 3.3189 -0.1912 -2.1320
16 6 5.8114 0.7501 -1.9893
17 6 6.2403 0.3284 -3.3961
18 6 7.3322 1.2736 -3.9013
19 6 7.7551 0.8578 -5.2867
20 1 7.2912 0.0049 -5.7597
21 6 8.7335 1.5669 -5.9507
22 7 9.2981 2.6057 -5.3749
23 14 9.2572 1.0519 -7.6682
24 1 8.0878 1.1129 -8.5815
25 1 10.3171 1.9693 -8.1585
26 1 9.7835 -0.3362 -7.6300
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 0.5139 0.8900
30 1 0.2147 2.3196 -0.0099
31 1 3.7909 4.6432 -0.0017
32 1 5.1387 2.5838 -0.0010
33 1 5.4248 1.7688 -2.0178
34 1 6.6696 0.7058 -1.3189
35 1 6.6268 -0.6905 -3.3680
36 1 5.3819 0.3729 -4.0664
37 1 6.9462 2.2926 -3.9293
38 1 8.1905 1.2285 -3.2309
39 1 9.9867 3.1044 -5.8419
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068908734.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:39
Heat of formation + Delta-G solvation = -142.026601 kcal
Electronic energy + Delta-G solvation = -28246.879660 eV
Core-core repulsion = 23864.837540 eV
Total energy + Delta-G solvation = -4382.042120 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 345.085 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-43.49312 -42.66734 -40.47442 -38.81455 -38.47880 -37.79379 -37.37358 -36.52954
-34.22893 -32.84598 -31.93337 -29.77021 -28.85073 -27.60887 -25.82102 -24.39630
-24.09023 -22.64986 -21.87711 -20.93789 -20.02110 -19.80682 -19.02540 -18.85038
-18.71862 -18.31465 -18.19267 -17.29426 -16.98989 -16.88957 -16.49588 -16.02168
-15.79975 -15.58780 -14.86718 -14.52954 -14.49938 -14.34049 -14.12526 -13.77347
-13.61430 -13.41884 -13.39192 -13.14304 -13.00343 -12.90924 -12.75415 -12.73700
-12.69941 -12.50096 -12.38105 -12.36802 -12.21024 -11.77315 -11.39682 -11.14647
-10.85760 -10.55930 -9.93826 -8.22346 -6.32523 -1.76333 -1.00129 -0.41323
-0.01793 0.08369 0.82117 1.41425 1.42741 1.50693 1.75477 1.75787
2.37392 2.43106 2.70990 3.01774 3.10759 3.11969 3.22697 3.38269
3.59562 3.70485 3.79342 4.04119 4.12787 4.25610 4.29295 4.33855
4.42308 4.52232 4.61097 4.65211 4.79996 4.85327 5.03823 5.10600
5.46048 5.63807 5.78215 5.79894 6.20123 6.35382 6.82735 7.36733
8.88610
Molecular weight = 345.09amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.003100 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.839795 B = 9030.356738 C =10569.012476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.003 3.997
2 O -0.313 6.313
3 C 0.150 3.850
4 C -0.133 4.133
5 C 0.000 4.000
6 N 0.027 4.973
7 O -0.154 6.154
8 O -0.163 6.163
9 C -0.066 4.066
10 C -0.080 4.080
11 C 0.062 3.938
12 O -0.651 6.651
13 S 2.597 3.403
14 O -0.959 6.959
15 O -0.965 6.965
16 C -0.628 4.628
17 C -0.104 4.104
18 C 0.032 3.968
19 C -0.554 4.554
20 H 0.059 0.941
21 C 0.006 3.994
22 N -0.927 5.927
23 Si 0.958 3.042
24 H -0.268 1.268
25 H -0.282 1.282
26 H -0.269 1.269
27 H 0.128 0.872
28 H 0.075 0.925
29 H 0.087 0.913
30 H 0.191 0.809
31 H 0.197 0.803
32 H 0.208 0.792
33 H 0.156 0.844
34 H 0.163 0.837
35 H 0.068 0.932
36 H 0.070 0.930
37 H 0.009 0.991
38 H 0.007 0.993
39 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.109 0.662 15.606 23.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 O -0.225 6.225
3 C 0.099 3.901
4 C -0.153 4.153
5 C -0.083 4.083
6 N 0.546 4.454
7 O -0.371 6.371
8 O -0.378 6.378
9 C -0.085 4.085
10 C -0.100 4.100
11 C 0.019 3.981
12 O -0.609 6.609
13 S 2.696 3.304
14 O -0.957 6.957
15 O -0.964 6.964
16 C -0.758 4.758
17 C -0.143 4.143
18 C -0.007 4.007
19 C -0.592 4.592
20 H 0.078 0.922
21 C -0.192 4.192
22 N -0.567 5.567
23 Si 0.783 3.217
24 H -0.193 1.193
25 H -0.207 1.207
26 H -0.194 1.194
27 H 0.146 0.854
28 H 0.093 0.907
29 H 0.105 0.895
30 H 0.208 0.792
31 H 0.214 0.786
32 H 0.224 0.776
33 H 0.174 0.826
34 H 0.181 0.819
35 H 0.087 0.913
36 H 0.089 0.911
37 H 0.027 0.973
38 H 0.026 0.974
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -16.959 -0.727 15.810 23.197
hybrid contribution 0.538 0.445 -1.043 1.255
sum -16.421 -0.283 14.767 22.087
Atomic orbital electron populations
1.23742 0.74456 1.07208 1.03636 1.86244 1.25227 1.24199 1.86801
1.18855 0.90511 0.86117 0.94602 1.21060 1.03740 0.88150 1.02348
1.21099 0.92224 0.83865 1.11147 1.43653 1.01398 1.02770 0.97544
1.94579 1.74259 1.15342 1.52913 1.94547 0.95884 1.94046 1.53335
1.21176 0.89640 1.01931 0.95742 1.21721 1.04224 0.87280 0.96792
1.18086 0.86926 0.83683 1.09413 1.85778 1.71740 1.46040 1.57354
1.05435 0.76250 0.75941 0.72759 1.93580 1.81706 1.37481 1.82922
1.93594 1.44249 1.86545 1.71990 1.30774 1.18834 1.17348 1.08807
1.21318 1.00778 1.01025 0.91199 1.18967 0.92824 0.94154 0.94734
1.21710 1.21102 1.14073 1.02345 0.92244 1.25856 0.96263 0.94922
1.02189 1.70039 1.27206 1.19794 1.39626 0.85606 0.78132 0.78372
0.79616 1.19341 1.20725 1.19378 0.85382 0.90652 0.89484 0.79226
0.78612 0.77557 0.82571 0.81946 0.91348 0.91121 0.97260 0.97431
0.92633
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.03 9.81 113.37 1.11 1.14 16
2 O -0.31 -6.66 9.72 -72.57 -0.71 -7.37 16
3 C 0.15 3.06 5.93 22.57 0.13 3.20 16
4 C -0.13 -2.20 8.54 22.35 0.19 -2.01 16
5 C 0.00 0.00 6.85 36.38 0.25 0.25 16
6 N 0.03 0.55 4.45 -46.46 -0.21 0.34 16
7 O -0.15 -3.39 18.44 18.88 0.35 -3.04 16
8 O -0.16 -3.55 18.44 18.89 0.35 -3.20 16
9 C -0.07 -0.91 9.55 22.28 0.21 -0.69 16
10 C -0.08 -1.14 8.46 22.35 0.19 -0.95 16
11 C 0.06 1.29 4.81 22.57 0.11 1.40 16
12 O -0.65 -15.73 9.84 -60.42 -0.59 -16.32 16
13 S 2.60 74.13 5.17 -56.49 -0.29 73.84 16
14 O -0.96 -34.04 18.09 -118.57 -2.15 -36.19 16
15 O -0.97 -30.81 15.81 -117.13 -1.85 -32.66 16
16 C -0.63 -16.57 5.46 71.98 0.39 -16.18 16
17 C -0.10 -3.88 5.16 30.59 0.16 -3.72 16
18 C 0.03 1.51 4.97 29.85 0.15 1.66 16
19 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16
20 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16
21 C 0.01 0.35 5.46 84.66 0.46 0.81 16
22 N -0.93 -53.63 13.29 21.45 0.28 -53.34 16
23 Si 0.96 42.97 29.54 68.60 2.03 44.99 16
24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
27 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
28 H 0.07 0.72 7.65 -2.39 -0.02 0.71 16
29 H 0.09 0.55 7.68 -2.38 -0.02 0.53 16
30 H 0.19 2.23 5.85 -2.91 -0.02 2.21 16
31 H 0.20 1.77 7.60 -2.91 -0.02 1.75 16
32 H 0.21 1.54 7.49 -2.91 -0.02 1.51 16
33 H 0.16 3.24 6.60 -2.39 -0.02 3.22 16
34 H 0.16 3.50 8.14 -2.40 -0.02 3.48 16
35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16
36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16
Total: -1.00 -76.46 356.00 1.90 -74.56
By element:
Atomic # 1 Polarization: 2.38 SS G_CDS: 1.10 Total: 3.48 kcal
Atomic # 6 Polarization: -48.68 SS G_CDS: 3.59 Total: -45.09 kcal
Atomic # 7 Polarization: -53.08 SS G_CDS: 0.08 Total: -53.00 kcal
Atomic # 8 Polarization: -94.18 SS G_CDS: -4.60 Total: -98.78 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal
Atomic # 16 Polarization: 74.13 SS G_CDS: -0.29 Total: 73.84 kcal
Total: -76.46 1.90 -74.56 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068908734.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.463 kcal
(2) G-P(sol) polarization free energy of solvation -76.465 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds