Wall clock time and date at job start Wed Apr 1 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47265 * 2 1 4 4 N 1.46492 * 109.47086 * 183.61722 * 3 2 1 5 5 C 1.36937 * 120.00403 * 274.59756 * 4 3 2 6 6 H 1.07999 * 120.00116 * 141.83028 * 5 4 3 7 7 C 1.38813 * 119.99967 * 321.84076 * 5 4 3 8 8 N 1.31614 * 120.00039 * 157.89206 * 7 5 4 9 9 Si 1.86802 * 119.99864 * 337.88770 * 7 5 4 10 10 H 1.48499 * 109.46983 * 93.28874 * 9 7 5 11 11 H 1.48495 * 109.47002 * 213.28780 * 9 7 5 12 12 H 1.48505 * 109.47179 * 333.29233 * 9 7 5 13 13 S 1.65609 * 119.99917 * 94.60483 * 4 3 2 14 14 O 1.42092 * 106.40284 * 18.11820 * 13 4 3 15 15 O 1.42101 * 106.40252 * 151.04192 * 13 4 3 16 16 C 1.76202 * 107.21403 * 264.57764 * 13 4 3 17 17 C 1.37837 * 120.06532 * 347.48047 * 16 13 4 18 18 C 1.38648 * 120.12334 * 179.76695 * 17 16 13 19 19 F 1.35106 * 119.87611 * 180.27497 * 18 17 16 20 20 C 1.38686 * 120.24698 * 0.50863 * 18 17 16 21 21 C 1.37791 * 120.12732 * 359.74884 * 20 18 17 22 22 C 1.39688 * 120.05998 * 167.75066 * 16 13 4 23 23 C 1.47598 * 120.12386 * 0.02562 * 22 16 13 24 24 O 1.21489 * 120.00017 * 6.31716 * 23 22 16 25 25 O 1.34723 * 119.99995 * 186.31152 * 23 22 16 26 26 C 1.45203 * 117.00048 * 179.97438 * 25 23 22 27 27 H 1.09004 * 109.46861 * 300.00442 * 1 2 3 28 28 H 1.08995 * 109.47171 * 60.00091 * 1 2 3 29 29 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46913 * 239.99549 * 2 1 3 31 31 H 1.09000 * 109.46497 * 119.99697 * 2 1 3 32 32 H 1.09004 * 109.47231 * 63.61613 * 3 2 1 33 33 H 1.09006 * 109.46872 * 303.61827 * 3 2 1 34 34 H 0.97001 * 119.99924 * 179.97438 * 8 7 5 35 35 H 1.08005 * 119.94046 * 0.02562 * 17 16 13 36 36 H 1.08001 * 119.93477 * 179.72476 * 20 18 17 37 37 H 1.07998 * 120.06476 * 179.97438 * 21 20 18 38 38 H 1.09003 * 109.47284 * 300.00394 * 26 25 23 39 39 H 1.09001 * 109.46607 * 60.00341 * 26 25 23 40 40 H 1.09001 * 109.47074 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5024 1.4433 -0.0871 5 6 4.2562 1.3239 1.0498 6 1 5.1642 0.7393 1.0368 7 6 3.8532 1.9540 2.2192 8 7 4.2873 1.5204 3.3836 9 14 2.6948 3.4173 2.1401 10 1 1.2936 2.9479 2.2865 11 1 3.0170 4.3636 3.2382 12 1 2.8528 4.1037 0.8327 13 16 4.2440 1.5890 -1.5607 14 8 3.2677 2.1109 -2.4514 15 8 5.4937 2.2212 -1.3203 16 6 4.6106 -0.0400 -2.1233 17 6 4.5137 -1.1079 -1.2571 18 6 4.7973 -2.3908 -1.6998 19 9 4.6953 -3.4346 -0.8480 20 6 5.1898 -2.6061 -3.0124 21 6 5.2952 -1.5455 -3.8856 22 6 5.0055 -0.2510 -3.4465 23 6 5.1173 0.8893 -4.3769 24 8 4.9783 2.0242 -3.9664 25 8 5.3737 0.6715 -5.6815 26 6 5.4697 1.8398 -6.5384 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7307 1.9373 0.9206 33 1 1.6247 1.9747 -0.8558 34 1 4.0059 1.9610 4.2007 35 1 4.2124 -0.9454 -0.2328 36 1 5.4137 -3.6071 -3.3507 37 1 5.6013 -1.7143 -4.9075 38 1 4.5278 2.3878 -6.5125 39 1 6.2748 2.4842 -6.1853 40 1 5.6782 1.5244 -7.5608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:44 Heat of formation + Delta-G solvation = -174.473799 kcal Electronic energy + Delta-G solvation = -29973.185340 eV Core-core repulsion = 25602.108993 eV Total energy + Delta-G solvation = -4371.076347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.16834 -41.98951 -39.89899 -38.40987 -38.07760 -37.76383 -36.57911 -34.53183 -33.17868 -32.76264 -32.53258 -28.74661 -27.61487 -25.88660 -25.31405 -24.74525 -22.94493 -22.27602 -20.49345 -19.96693 -19.17978 -18.71695 -18.45756 -18.39986 -17.73228 -17.49038 -17.06970 -16.91234 -16.84327 -16.20006 -15.90780 -15.67388 -15.00613 -14.98186 -14.77919 -14.69938 -14.56280 -14.33402 -14.22240 -13.78794 -13.57020 -13.37608 -13.20598 -13.14343 -13.01134 -12.92294 -12.77737 -12.46815 -12.36889 -12.16399 -12.04047 -11.95244 -11.89922 -11.72778 -11.44932 -10.81566 -10.69582 -10.21013 -10.05707 -8.46397 -6.10005 -1.04565 -0.50405 -0.33170 1.04327 1.18717 1.31523 1.33656 1.42540 2.10157 2.18079 2.25810 2.70002 2.86243 3.02274 3.24609 3.51380 3.68739 3.77450 3.92069 3.99335 4.07163 4.17187 4.25864 4.28780 4.38495 4.45150 4.54101 4.61736 4.66143 4.68501 4.71189 4.80106 4.95682 5.00921 5.10235 5.20601 5.31309 5.43841 5.52256 5.68209 6.14523 6.28019 7.06465 7.08584 8.67416 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.005596 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.183509 B = 5002.100407 C = 6029.363034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.095 3.905 4 N -0.881 5.881 5 C -0.310 4.310 6 H 0.083 0.917 7 C 0.038 3.962 8 N -0.895 5.895 9 Si 0.906 3.094 10 H -0.239 1.239 11 H -0.285 1.285 12 H -0.279 1.279 13 S 2.667 3.333 14 O -0.988 6.988 15 O -0.996 6.996 16 C -0.592 4.592 17 C -0.081 4.081 18 C 0.119 3.881 19 F -0.124 7.124 20 C -0.097 4.097 21 C -0.027 4.027 22 C -0.078 4.078 23 C 0.491 3.509 24 O -0.524 6.524 25 O -0.331 6.331 26 C 0.023 3.977 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.279 0.721 35 H 0.157 0.843 36 H 0.205 0.795 37 H 0.202 0.798 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -11.037 -17.144 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.030 4.030 4 N -0.715 5.715 5 C -0.443 4.443 6 H 0.101 0.899 7 C -0.168 4.168 8 N -0.534 5.534 9 Si 0.732 3.268 10 H -0.164 1.164 11 H -0.211 1.211 12 H -0.204 1.204 13 S 2.764 3.236 14 O -0.977 6.977 15 O -0.986 6.986 16 C -0.678 4.678 17 C -0.101 4.101 18 C 0.099 3.901 19 F -0.102 7.102 20 C -0.115 4.115 21 C -0.046 4.046 22 C -0.081 4.081 23 C 0.337 3.663 24 O -0.415 6.415 25 O -0.247 6.247 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.222 0.778 37 H 0.219 0.781 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.091 -9.939 -17.389 20.138 hybrid contribution -0.168 0.686 0.901 1.145 sum -2.259 -9.253 -16.488 19.041 Atomic orbital electron populations 1.21726 0.93441 1.03038 1.02226 1.21914 0.97495 0.95687 1.02441 1.21862 0.79765 0.99156 1.02241 1.53189 1.11732 1.86901 1.19690 1.18453 1.08728 1.30418 0.86728 0.89922 1.25775 0.98546 0.97872 0.94653 1.69875 1.45731 1.39752 0.98053 0.86481 0.81048 0.81435 0.77826 1.16403 1.21126 1.20384 1.03110 0.73419 0.74358 0.72736 1.93406 1.61636 1.77155 1.65531 1.93419 1.46395 1.73175 1.85571 1.30879 1.11532 1.23951 1.01486 1.21158 0.97161 0.90918 1.00832 1.18160 0.99404 0.83137 0.89420 1.91572 1.93204 1.55320 1.70129 1.21889 0.96816 1.03141 0.89640 1.21855 0.92572 0.87748 1.02404 1.18801 1.04764 0.94646 0.89902 1.21495 0.73069 0.88212 0.83563 1.90920 1.46615 1.25948 1.77998 1.86460 1.81122 1.39933 1.17138 1.23808 1.02859 0.86148 0.94185 0.92620 0.91936 0.90485 0.91983 0.91343 0.91794 0.90066 0.91163 0.82534 0.77764 0.78108 0.92014 0.91881 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.14 -4.74 6.03 30.60 0.18 -4.55 16 3 C 0.09 4.07 4.59 86.38 0.40 4.47 16 4 N -0.88 -43.44 1.70 -343.46 -0.58 -44.02 16 5 C -0.31 -17.00 8.39 84.03 0.70 -16.30 16 6 H 0.08 4.80 7.94 -2.91 -0.02 4.78 16 7 C 0.04 2.09 5.32 84.86 0.45 2.55 16 8 N -0.90 -51.10 13.97 21.65 0.30 -50.79 16 9 Si 0.91 43.77 25.14 68.60 1.72 45.50 16 10 H -0.24 -10.20 6.58 99.48 0.65 -9.55 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 13 S 2.67 132.84 3.95 -56.49 -0.22 132.61 16 14 O -0.99 -50.28 14.10 -118.57 -1.67 -51.95 16 15 O -1.00 -57.48 16.75 -120.93 -2.03 -59.50 16 16 C -0.59 -23.15 5.86 22.53 0.13 -23.02 16 17 C -0.08 -2.82 8.71 22.27 0.19 -2.62 16 18 C 0.12 3.10 7.31 22.47 0.16 3.27 16 19 F -0.12 -3.19 17.26 44.97 0.78 -2.41 16 20 C -0.10 -1.69 10.01 22.27 0.22 -1.47 16 21 C -0.03 -0.54 9.61 22.52 0.22 -0.33 16 22 C -0.08 -2.53 5.87 -20.10 -0.12 -2.65 16 23 C 0.49 17.12 7.74 70.29 0.54 17.67 16 24 O -0.52 -23.43 11.63 29.78 0.35 -23.08 16 25 O -0.33 -8.10 9.83 -56.33 -0.55 -8.65 16 26 C 0.02 0.42 10.57 113.37 1.20 1.62 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.02 7.30 -2.39 -0.02 2.00 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.81 3.07 -2.38 -0.01 2.81 16 33 H 0.08 3.35 6.89 -2.38 -0.02 3.34 16 34 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.16 5.98 6.13 -2.91 -0.02 5.96 16 36 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.20 2.10 7.62 -2.91 -0.02 2.08 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.33 347.36 4.13 -75.20 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.03 Total: 11.75 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 5.00 Total: -24.65 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -0.28 Total: -94.82 kcal Atomic # 8 Polarization: -139.28 SS G_CDS: -3.90 Total: -143.19 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.72 Total: 45.50 kcal Atomic # 16 Polarization: 132.84 SS G_CDS: -0.22 Total: 132.61 kcal Total: -79.33 4.13 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.273 kcal (2) G-P(sol) polarization free energy of solvation -79.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds