Wall clock time and date at job start Wed Apr 1 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86805 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47239 * 240.00192 * 3 2 1 5 5 H 1.48495 * 109.46686 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46855 * 119.99950 * 3 2 1 7 7 C 1.39047 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36872 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00002 * 179.97438 * 9 7 2 11 11 O 1.21590 * 120.00005 * 0.02562 * 10 9 7 12 12 C 1.47735 * 120.00056 * 180.02562 * 10 9 7 13 13 C 1.39660 * 120.14826 * 5.85078 * 12 10 9 14 14 C 1.37920 * 119.84546 * 180.02562 * 13 12 10 15 15 C 1.38400 * 120.14840 * 359.74789 * 14 13 12 16 16 C 1.38346 * 120.30451 * 0.51130 * 15 14 13 17 17 C 1.37957 * 120.15744 * 359.48499 * 16 15 14 18 18 C 1.50700 * 120.08291 * 180.27968 * 17 16 15 19 19 S 1.81396 * 109.46966 * 93.15582 * 18 17 16 20 20 O 1.42105 * 110.54181 * 291.62167 * 19 18 17 21 21 O 1.42096 * 110.54554 * 68.37872 * 19 18 17 22 22 C 1.76200 * 104.44651 * 180.02562 * 19 18 17 23 23 C 1.38244 * 119.99880 * 269.72804 * 22 19 18 24 24 C 1.38234 * 119.99796 * 179.77050 * 23 22 19 25 25 C 1.38241 * 120.00013 * 0.49766 * 24 23 22 26 26 C 1.38237 * 119.99943 * 359.75323 * 25 24 23 27 27 C 1.38227 * 120.00075 * 0.02562 * 26 25 24 28 28 H 0.97003 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00412 * 0.02562 * 9 7 2 30 30 H 1.07999 * 120.07843 * 359.97438 * 13 12 10 31 31 H 1.07999 * 119.92125 * 179.97438 * 14 13 12 32 32 H 1.07996 * 119.84465 * 180.25186 * 15 14 13 33 33 H 1.08008 * 119.92539 * 179.76645 * 16 15 14 34 34 H 1.09001 * 109.47118 * 213.16128 * 18 17 16 35 35 H 1.08997 * 109.46433 * 333.15369 * 18 17 16 36 36 H 1.07996 * 119.99612 * 359.97438 * 23 22 19 37 37 H 1.08003 * 119.99952 * 180.23056 * 24 23 22 38 38 H 1.07997 * 119.99859 * 179.72841 * 25 24 23 39 39 H 1.07993 * 119.99693 * 179.97438 * 26 25 24 40 40 H 1.08001 * 120.00454 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7464 0.0006 6 1 3.1014 1.6963 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2043 -0.0001 9 7 1.3245 -2.3895 -0.0005 10 6 1.9983 -3.5567 -0.0016 11 8 3.2142 -3.5567 -0.0021 12 6 1.2597 -4.8361 -0.0022 13 6 -0.1315 -4.8428 -0.1247 14 6 -0.8149 -6.0408 -0.1240 15 6 -0.1247 -7.2347 -0.0074 16 6 1.2530 -7.2351 0.1197 17 6 1.9492 -6.0441 0.1204 18 6 3.4504 -6.0468 0.2527 19 16 4.2028 -6.0402 -1.3979 20 8 3.9617 -7.2739 -2.0607 21 8 3.9652 -4.8000 -2.0493 22 6 5.9377 -6.0448 -1.0902 23 6 6.6214 -4.8494 -0.9694 24 6 7.9816 -4.8530 -0.7232 25 6 8.6601 -6.0520 -0.6082 26 6 7.9773 -7.2473 -0.7341 27 6 6.6163 -7.2437 -0.9757 28 1 -0.4850 0.8401 0.0004 29 1 0.3545 -2.3896 -0.0005 30 1 -0.6711 -3.9120 -0.2190 31 1 -1.8908 -6.0473 -0.2183 32 1 -0.6644 -8.1701 -0.0115 33 1 1.7851 -8.1702 0.2141 34 1 3.7685 -5.1598 0.8006 35 1 3.7659 -6.9397 0.7923 36 1 6.0922 -3.9128 -1.0640 37 1 8.5152 -3.9191 -0.6251 38 1 9.7236 -6.0547 -0.4202 39 1 8.5074 -8.1839 -0.6447 40 1 6.0829 -8.1776 -1.0746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108791923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:43 Heat of formation + Delta-G solvation = -65.766242 kcal Electronic energy + Delta-G solvation = -27687.803125 eV Core-core repulsion = 23752.209916 eV Total energy + Delta-G solvation = -3935.593209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10284 -40.03032 -39.03056 -38.03846 -36.88984 -36.19504 -34.04851 -33.28658 -32.28147 -31.98796 -31.92295 -28.64074 -27.02289 -24.46998 -24.19446 -23.68706 -22.73795 -21.28566 -20.18655 -19.86421 -18.95753 -18.33497 -17.47208 -17.11249 -17.00543 -16.78654 -16.37060 -16.29693 -15.78740 -15.64870 -15.51235 -15.45787 -15.23836 -14.47697 -14.41602 -14.30216 -13.97233 -13.65856 -13.63064 -13.34566 -13.18804 -13.04833 -12.94540 -12.88432 -12.70793 -12.49356 -12.20025 -12.17593 -12.11089 -12.01458 -11.54047 -11.52284 -10.40464 -10.21031 -10.07011 -10.03783 -9.92062 -9.70961 -8.52862 -5.95329 -0.98505 -0.15711 -0.00212 0.30487 0.37473 1.39332 1.41476 1.51147 1.98998 2.11960 2.26809 2.47552 2.79832 2.96632 3.09610 3.24202 3.33564 3.49876 3.72947 3.89891 3.98474 4.05558 4.10955 4.15527 4.23396 4.39973 4.48119 4.50657 4.55176 4.61794 4.70918 4.91165 4.98190 5.03076 5.14278 5.28100 5.35884 5.37302 5.37511 5.42529 5.47513 5.88853 5.91358 5.99091 6.53697 7.06081 7.47063 8.03669 8.64730 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.004622 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.500303 B = 6056.011179 C = 8609.247136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.328 4.328 8 H 0.088 0.912 9 N -0.556 5.556 10 C 0.463 3.537 11 O -0.600 6.600 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.107 4.107 15 C -0.099 4.099 16 C -0.114 4.114 17 C -0.075 4.075 18 C -0.548 4.548 19 S 2.491 3.509 20 O -0.969 6.969 21 O -0.963 6.963 22 C -0.666 4.666 23 C -0.045 4.045 24 C -0.149 4.149 25 C -0.062 4.062 26 C -0.139 4.139 27 C -0.042 4.042 28 H 0.281 0.719 29 H 0.395 0.605 30 H 0.125 0.875 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.785 -17.339 2.843 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.105 0.895 9 N -0.191 5.191 10 C 0.252 3.748 11 O -0.488 6.488 12 C -0.129 4.129 13 C -0.134 4.134 14 C -0.125 4.125 15 C -0.117 4.117 16 C -0.133 4.133 17 C -0.078 4.078 18 C -0.678 4.678 19 S 2.678 3.322 20 O -0.967 6.967 21 O -0.960 6.960 22 C -0.755 4.755 23 C -0.064 4.064 24 C -0.168 4.168 25 C -0.080 4.080 26 C -0.158 4.158 27 C -0.061 4.061 28 H 0.090 0.910 29 H 0.230 0.770 30 H 0.143 0.857 31 H 0.183 0.817 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.075 -17.119 2.005 19.034 hybrid contribution 0.093 1.607 0.514 1.689 sum 8.169 -15.513 2.519 17.712 Atomic orbital electron populations 1.69642 1.07003 1.29730 1.49119 1.26149 0.96595 1.02620 0.95988 0.84948 0.77829 0.76262 0.79082 1.19886 1.19227 1.19170 1.19769 0.93169 0.83610 1.49183 0.89455 1.41835 1.09457 1.04751 1.63092 1.18387 0.87712 0.84347 0.84332 1.90393 1.14147 1.87152 1.57138 1.20177 0.95145 0.93261 1.04296 1.21581 0.92284 1.00455 0.99057 1.21597 1.01933 0.91118 0.97892 1.21791 0.93460 0.99723 0.96768 1.21548 0.95734 0.96936 0.99057 1.19170 0.92406 0.93317 1.02930 1.29335 1.01842 1.14689 1.21903 1.05272 0.75327 0.73302 0.78304 1.93462 1.85505 1.45564 1.72136 1.93564 1.84636 1.45109 1.72699 1.30390 1.24665 1.00565 1.19908 1.21130 0.96352 0.96551 0.92351 1.21650 0.93389 1.00693 1.01035 1.21968 1.01850 0.91594 0.92569 1.21762 0.93555 1.00333 1.00127 1.21330 0.96393 0.96050 0.92356 0.90974 0.76951 0.85724 0.81749 0.80716 0.81704 0.82316 0.81113 0.86389 0.83224 0.81263 0.81148 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.07 13.05 21.68 0.28 -49.78 16 2 C -0.01 -0.71 5.50 84.96 0.47 -0.24 16 3 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.33 -19.12 9.68 84.10 0.81 -18.30 16 8 H 0.09 5.33 7.15 -2.91 -0.02 5.31 16 9 N -0.56 -30.37 5.23 -309.72 -1.62 -31.99 16 10 C 0.46 23.88 7.58 86.75 0.66 24.54 16 11 O -0.60 -32.62 10.52 16.83 0.18 -32.44 16 12 C -0.12 -5.17 5.87 -20.09 -0.12 -5.29 16 13 C -0.11 -3.99 9.53 22.54 0.21 -3.78 16 14 C -0.11 -2.68 10.03 22.23 0.22 -2.45 16 15 C -0.10 -2.15 10.04 22.33 0.22 -1.92 16 16 C -0.11 -2.95 9.67 22.23 0.22 -2.73 16 17 C -0.08 -2.63 5.18 -19.59 -0.10 -2.73 16 18 C -0.55 -18.16 5.28 71.24 0.38 -17.78 16 19 S 2.49 93.88 4.99 -56.49 -0.28 93.60 16 20 O -0.97 -36.40 17.12 -127.65 -2.19 -38.59 16 21 O -0.96 -47.31 14.88 -119.29 -1.78 -49.09 16 22 C -0.67 -21.42 5.66 22.27 0.13 -21.29 16 23 C -0.04 -1.48 9.47 22.27 0.21 -1.27 16 24 C -0.15 -3.62 10.05 22.27 0.22 -3.40 16 25 C -0.06 -1.11 10.05 22.27 0.22 -0.89 16 26 C -0.14 -2.51 10.05 22.27 0.22 -2.29 16 27 C -0.04 -1.04 9.47 22.27 0.21 -0.83 16 28 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.40 20.53 5.96 -92.71 -0.55 19.98 16 30 H 0.12 4.42 6.45 -2.91 -0.02 4.40 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 6.07 5.58 -2.39 -0.01 6.06 16 35 H 0.17 3.76 8.06 -2.39 -0.02 3.74 16 36 H 0.12 4.56 7.57 -2.91 -0.02 4.54 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.16 3.12 7.57 -2.91 -0.02 3.10 16 Total: -1.00 -82.21 354.78 1.36 -80.86 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: 0.54 Total: 42.59 kcal Atomic # 6 Polarization: -64.85 SS G_CDS: 4.19 Total: -60.66 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.34 Total: -81.77 kcal Atomic # 8 Polarization: -116.33 SS G_CDS: -3.78 Total: -120.12 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 93.88 SS G_CDS: -0.28 Total: 93.60 kcal Total: -82.21 1.36 -80.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108791923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.089 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds