Wall clock time and date at job start Wed Apr 1 2020 03:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36692 * 126.61329 * 2 1 4 4 C 1.47423 * 125.77518 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99662 * 3.24217 * 4 3 2 6 6 N 1.34775 * 120.00050 * 183.24067 * 4 3 2 7 7 C 1.36960 * 119.99575 * 185.07582 * 6 4 3 8 8 H 1.07993 * 120.00109 * 30.51451 * 7 6 4 9 9 C 1.38986 * 119.99550 * 210.50860 * 7 6 4 10 10 N 1.31407 * 120.00668 * 22.69824 * 9 7 6 11 11 Si 1.86803 * 119.99947 * 202.69760 * 9 7 6 12 12 H 1.48501 * 109.47123 * 94.99064 * 11 9 7 13 13 H 1.48493 * 109.47532 * 214.99347 * 11 9 7 14 14 H 1.48498 * 109.46793 * 334.99415 * 11 9 7 15 15 C 1.46497 * 120.00065 * 5.08251 * 6 4 3 16 16 C 1.47198 * 109.47066 * 274.56700 * 15 6 4 17 17 N 5.09119 * 138.04637 * 37.45007 * 2 1 3 18 18 N 1.34440 * 108.44885 * 179.73597 * 3 2 1 19 19 N 1.28747 * 109.58759 * 0.25733 * 18 3 2 20 20 N 1.35106 * 126.60643 * 180.18440 * 2 1 3 21 21 C 1.40217 * 126.61051 * 359.95357 * 20 2 1 22 22 C 1.38858 * 120.06108 * 41.62294 * 21 20 2 23 23 C 1.38100 * 119.96155 * 179.97438 * 22 21 20 24 24 C 1.38274 * 120.08187 * 359.97438 * 23 22 21 25 25 C 1.38375 * 120.11775 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 119.98309 * 180.02562 * 25 24 23 27 27 C 1.38266 * 120.03817 * 359.73793 * 25 24 23 28 28 H 1.09005 * 109.46936 * 90.90987 * 1 2 3 29 29 H 1.09000 * 109.47489 * 210.91672 * 1 2 3 30 30 H 1.09004 * 109.46835 * 330.91966 * 1 2 3 31 31 H 0.96995 * 120.00257 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47482 * 34.56778 * 15 6 4 33 33 H 1.09004 * 109.47180 * 154.56703 * 15 6 4 34 34 H 1.08008 * 120.01632 * 359.97438 * 22 21 20 35 35 H 1.08008 * 119.95676 * 180.02562 * 23 22 21 36 36 H 1.07996 * 119.94290 * 180.02562 * 24 23 22 37 37 H 1.08000 * 120.04056 * 180.25439 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3222 1.0972 0.0000 4 6 1.8762 2.5023 -0.0005 5 8 0.6898 2.7637 0.0585 6 7 2.7830 3.4972 -0.0665 7 6 2.3776 4.8013 0.0377 8 1 1.5104 5.0514 0.6307 9 6 3.0823 5.8026 -0.6198 10 7 3.8255 5.5071 -1.6624 11 14 2.9730 7.5688 -0.0213 12 1 4.1116 7.8546 0.8883 13 1 3.0257 8.4900 -1.1848 14 1 1.6949 7.7659 0.7087 15 6 4.2023 3.1837 -0.2497 16 6 4.8177 2.9122 1.0596 17 7 5.2932 2.7021 2.0696 18 7 3.5996 0.6781 0.0059 19 7 3.6316 -0.6090 0.0041 20 7 2.3126 -1.0846 -0.0035 21 6 1.9078 -2.4270 -0.0069 22 6 0.8463 -2.8314 -0.8056 23 6 0.4496 -4.1541 -0.8078 24 6 1.1084 -5.0766 -0.0160 25 6 2.1666 -4.6773 0.7812 26 17 2.9918 -5.8385 1.7734 27 6 2.5711 -3.3551 0.7835 28 1 -0.3633 -0.0163 -1.0276 29 1 -0.3634 -0.8816 0.5280 30 1 -0.3633 0.8982 0.4995 31 1 4.3170 6.2061 -2.1214 32 1 4.3010 2.3048 -0.8868 33 1 4.7038 4.0304 -0.7183 34 1 0.3312 -2.1117 -1.4248 35 1 -0.3758 -4.4687 -1.4293 36 1 0.7966 -6.1106 -0.0197 37 1 3.3996 -3.0442 1.4026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126544007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:45 Heat of formation + Delta-G solvation = 135.332059 kcal Electronic energy + Delta-G solvation = -26756.535572 eV Core-core repulsion = 22756.371341 eV Total energy + Delta-G solvation = -4000.164231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25613 -39.76771 -38.50457 -36.96883 -35.93229 -34.77259 -34.51991 -32.40271 -31.94761 -31.18891 -29.92540 -27.86611 -27.37198 -25.11988 -24.24610 -23.45298 -22.27054 -21.04961 -19.57471 -18.31227 -17.97962 -16.95164 -16.53175 -16.16812 -15.83975 -15.37555 -15.26577 -14.80762 -14.46884 -14.29312 -14.09128 -13.86243 -13.43351 -13.25049 -13.19707 -12.97172 -12.84484 -12.33882 -12.17711 -12.06768 -11.97279 -11.90084 -11.68808 -11.41587 -11.30100 -11.25708 -11.00105 -10.82931 -10.55935 -10.42963 -10.22500 -9.40135 -9.20543 -9.14301 -8.87061 -8.72312 -7.90000 -6.57493 -4.15600 0.29493 0.61694 1.44452 1.59945 2.08168 2.17247 3.01509 3.12299 3.20988 3.24177 3.49938 3.77522 3.98674 4.08809 4.22647 4.32538 4.46218 4.50014 4.55360 4.73049 4.76462 4.82763 4.89477 5.14497 5.21554 5.33477 5.39436 5.53399 5.60190 5.71849 5.73271 5.83300 5.95374 6.00126 6.23193 6.46817 6.72622 6.88372 7.40337 7.88200 8.13648 8.27702 8.49741 8.88050 9.09050 9.66145 10.46028 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002717 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.242713 B =10301.224626 C =11095.462148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.110 3.890 3 C -0.066 4.066 4 C 0.533 3.467 5 O -0.564 6.564 6 N -0.414 5.414 7 C -0.306 4.306 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.860 5.860 11 Si 0.925 3.075 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.265 1.265 15 C 0.180 3.820 16 C 0.227 3.773 17 N -0.474 5.474 18 N -0.199 5.199 19 N -0.070 5.070 20 N -0.330 5.330 21 C 0.158 3.842 22 C -0.112 4.112 23 C -0.087 4.087 24 C -0.106 4.106 25 C -0.020 4.020 26 Cl -0.057 7.057 27 C -0.095 4.095 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.276 0.724 32 H 0.113 0.887 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -19.431 -1.413 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 C -0.203 4.203 4 C 0.320 3.680 5 O -0.446 6.446 6 N -0.131 5.131 7 C -0.434 4.434 8 H 0.123 0.877 9 C -0.168 4.168 10 N -0.497 5.497 11 Si 0.751 3.249 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.052 3.948 16 C -0.091 4.091 17 N -0.154 5.154 18 N -0.073 5.073 19 N -0.047 5.047 20 N -0.112 5.112 21 C 0.066 3.934 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.048 4.048 26 Cl -0.028 7.028 27 C -0.115 4.115 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.410 -19.899 0.064 20.382 hybrid contribution -0.747 0.832 -0.122 1.125 sum -5.157 -19.067 -0.059 19.752 Atomic orbital electron populations 1.20774 0.84729 1.05505 1.04218 1.21946 0.96141 0.85345 0.98889 1.21857 0.87882 0.96820 1.13786 1.16739 0.86039 0.81366 0.83826 1.90608 1.15500 1.82506 1.55972 1.43192 1.03130 1.05590 1.61180 1.19674 1.15111 0.79747 1.28847 0.87737 1.25414 0.96956 1.00830 0.93639 1.69749 1.29488 1.35101 1.15400 0.85913 0.79333 0.81032 0.78614 1.20069 1.20607 1.18953 1.19645 0.83599 1.05653 0.85895 1.30203 0.92754 0.90726 0.95435 1.80945 1.10530 1.11817 1.12076 1.74817 1.19515 1.03055 1.09867 1.82092 0.94771 1.04299 1.23518 1.47463 1.07400 1.04133 1.52200 1.17259 0.97076 0.80552 0.98540 1.21312 0.96598 0.97449 0.97951 1.21007 0.99720 0.91461 0.98403 1.21218 0.94505 1.01125 0.95668 1.20663 0.96598 0.90193 0.97312 1.98399 1.77899 1.58073 1.68385 1.20908 1.00928 0.90884 0.98818 0.89290 0.91152 0.86337 0.91356 0.86982 0.82685 0.83922 0.83584 0.84038 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 8.31 36.00 0.30 -0.91 16 2 C 0.11 1.82 6.84 -81.71 -0.56 1.27 16 3 C -0.07 -1.34 6.61 -83.54 -0.55 -1.89 16 4 C 0.53 12.55 7.57 -12.52 -0.09 12.45 16 5 O -0.56 -13.95 14.51 5.25 0.08 -13.87 16 6 N -0.41 -10.11 2.54 -119.16 -0.30 -10.41 16 7 C -0.31 -7.89 9.02 -14.98 -0.14 -8.02 16 8 H 0.11 2.78 7.69 -52.49 -0.40 2.37 16 9 C 0.04 0.90 4.96 -17.46 -0.09 0.81 16 10 N -0.86 -21.01 11.11 55.50 0.62 -20.40 16 11 Si 0.93 19.34 29.61 -169.99 -5.03 14.31 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 15 C 0.18 3.99 5.07 -6.83 -0.03 3.96 16 16 C 0.23 5.15 14.17 -20.76 -0.29 4.86 16 17 N -0.47 -11.20 18.54 42.15 0.78 -10.42 16 18 N -0.20 -4.03 7.83 32.85 0.26 -3.78 16 19 N -0.07 -1.28 13.63 60.35 0.82 -0.46 16 20 N -0.33 -5.12 3.72 -6.70 -0.02 -5.14 16 21 C 0.16 1.89 6.17 -83.59 -0.52 1.37 16 22 C -0.11 -0.99 8.53 -39.40 -0.34 -1.33 16 23 C -0.09 -0.55 10.04 -39.62 -0.40 -0.95 16 24 C -0.11 -0.73 9.83 -39.52 -0.39 -1.12 16 25 C -0.02 -0.18 6.32 -39.52 -0.25 -0.43 16 26 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 27 C -0.09 -1.06 9.63 -39.37 -0.38 -1.44 16 28 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 29 H 0.07 0.70 7.35 -51.93 -0.38 0.32 16 30 H 0.12 1.80 6.32 -51.93 -0.33 1.47 16 31 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 32 H 0.11 2.36 5.74 -51.93 -0.30 2.06 16 33 H 0.16 3.57 5.09 -51.93 -0.26 3.31 16 34 H 0.14 1.11 6.81 -52.48 -0.36 0.75 16 35 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -30.11 344.17 -5.69 -35.80 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.85 Total: 2.55 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -3.72 Total: 8.63 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 2.15 Total: -50.60 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.11 -5.69 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126544007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.135 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds