Wall clock time and date at job start Wed Apr 1 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36692 * 126.61329 * 2 1 4 4 C 1.47423 * 125.77518 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99662 * 3.24217 * 4 3 2 6 6 N 1.34775 * 120.00050 * 183.24067 * 4 3 2 7 7 C 1.36960 * 119.99575 * 185.07582 * 6 4 3 8 8 H 1.07993 * 120.00109 * 30.51451 * 7 6 4 9 9 C 1.38986 * 119.99550 * 210.50860 * 7 6 4 10 10 N 1.31407 * 120.00668 * 22.69824 * 9 7 6 11 11 Si 1.86803 * 119.99947 * 202.69760 * 9 7 6 12 12 H 1.48501 * 109.47123 * 94.99064 * 11 9 7 13 13 H 1.48493 * 109.47532 * 214.99347 * 11 9 7 14 14 H 1.48498 * 109.46793 * 334.99415 * 11 9 7 15 15 C 1.46497 * 120.00065 * 5.08251 * 6 4 3 16 16 C 1.47198 * 109.47066 * 274.56700 * 15 6 4 17 17 N 5.09119 * 138.04637 * 37.45007 * 2 1 3 18 18 N 1.34440 * 108.44885 * 179.73597 * 3 2 1 19 19 N 1.28747 * 109.58759 * 0.25733 * 18 3 2 20 20 N 1.35106 * 126.60643 * 180.18440 * 2 1 3 21 21 C 1.40217 * 126.61051 * 359.95357 * 20 2 1 22 22 C 1.38858 * 120.06108 * 41.62294 * 21 20 2 23 23 C 1.38100 * 119.96155 * 179.97438 * 22 21 20 24 24 C 1.38274 * 120.08187 * 359.97438 * 23 22 21 25 25 C 1.38375 * 120.11775 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 119.98309 * 180.02562 * 25 24 23 27 27 C 1.38266 * 120.03817 * 359.73793 * 25 24 23 28 28 H 1.09005 * 109.46936 * 90.90987 * 1 2 3 29 29 H 1.09000 * 109.47489 * 210.91672 * 1 2 3 30 30 H 1.09004 * 109.46835 * 330.91966 * 1 2 3 31 31 H 0.96995 * 120.00257 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47482 * 34.56778 * 15 6 4 33 33 H 1.09004 * 109.47180 * 154.56703 * 15 6 4 34 34 H 1.08008 * 120.01632 * 359.97438 * 22 21 20 35 35 H 1.08008 * 119.95676 * 180.02562 * 23 22 21 36 36 H 1.07996 * 119.94290 * 180.02562 * 24 23 22 37 37 H 1.08000 * 120.04056 * 180.25439 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3222 1.0972 0.0000 4 6 1.8762 2.5023 -0.0005 5 8 0.6898 2.7637 0.0585 6 7 2.7830 3.4972 -0.0665 7 6 2.3776 4.8013 0.0377 8 1 1.5104 5.0514 0.6307 9 6 3.0823 5.8026 -0.6198 10 7 3.8255 5.5071 -1.6624 11 14 2.9730 7.5688 -0.0213 12 1 4.1116 7.8546 0.8883 13 1 3.0257 8.4900 -1.1848 14 1 1.6949 7.7659 0.7087 15 6 4.2023 3.1837 -0.2497 16 6 4.8177 2.9122 1.0596 17 7 5.2932 2.7021 2.0696 18 7 3.5996 0.6781 0.0059 19 7 3.6316 -0.6090 0.0041 20 7 2.3126 -1.0846 -0.0035 21 6 1.9078 -2.4270 -0.0069 22 6 0.8463 -2.8314 -0.8056 23 6 0.4496 -4.1541 -0.8078 24 6 1.1084 -5.0766 -0.0160 25 6 2.1666 -4.6773 0.7812 26 17 2.9918 -5.8385 1.7734 27 6 2.5711 -3.3551 0.7835 28 1 -0.3633 -0.0163 -1.0276 29 1 -0.3634 -0.8816 0.5280 30 1 -0.3633 0.8982 0.4995 31 1 4.3170 6.2061 -2.1214 32 1 4.3010 2.3048 -0.8868 33 1 4.7038 4.0304 -0.7183 34 1 0.3312 -2.1117 -1.4248 35 1 -0.3758 -4.4687 -1.4293 36 1 0.7966 -6.1106 -0.0197 37 1 3.3996 -3.0442 1.4026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126544007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:44 Heat of formation + Delta-G solvation = 118.438658 kcal Electronic energy + Delta-G solvation = -26757.268124 eV Core-core repulsion = 22756.371341 eV Total energy + Delta-G solvation = -4000.896784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58776 -40.68637 -40.14248 -37.78282 -37.67665 -36.44821 -35.82528 -33.82781 -33.53115 -31.95926 -30.92479 -29.31215 -29.02403 -26.86185 -25.26887 -24.46384 -23.50257 -22.11409 -21.10960 -19.84876 -19.51831 -18.15641 -17.73273 -17.41404 -17.17667 -17.01848 -16.28670 -16.17425 -15.88644 -15.37432 -15.29648 -14.98181 -14.90920 -14.82721 -14.69493 -14.03879 -13.95579 -13.79962 -13.76602 -13.32685 -13.12482 -13.03098 -13.00014 -12.87399 -12.74156 -12.52011 -12.37503 -12.12047 -12.07195 -11.98663 -11.72188 -11.01803 -10.68332 -10.32437 -10.10073 -9.81815 -9.75104 -8.42674 -6.09570 -0.60358 -0.06764 0.37119 0.61674 0.74284 1.08728 1.44147 1.50048 1.58345 1.68609 1.92826 2.24588 2.33168 2.34694 2.86775 2.90979 3.15887 3.46646 3.53364 3.57567 3.69161 3.74687 3.83754 3.93753 4.09624 4.29206 4.39000 4.56543 4.58237 4.68762 4.72313 4.93777 5.01799 5.06354 5.11037 5.18307 5.37884 5.48247 5.70532 6.03505 6.33544 6.64790 6.78048 7.01672 7.22919 7.81825 8.61536 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002717 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.242713 B =10301.224626 C =11095.462148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.130 3.870 3 C -0.105 4.105 4 C 0.532 3.468 5 O -0.585 6.585 6 N -0.429 5.429 7 C -0.341 4.341 8 H 0.085 0.915 9 C 0.010 3.990 10 N -0.876 5.876 11 Si 0.983 3.017 12 H -0.273 1.273 13 H -0.269 1.269 14 H -0.268 1.268 15 C 0.192 3.808 16 C 0.238 3.762 17 N -0.492 5.492 18 N -0.221 5.221 19 N -0.089 5.089 20 N -0.312 5.312 21 C 0.117 3.883 22 C -0.105 4.105 23 C -0.069 4.069 24 C -0.088 4.088 25 C -0.028 4.028 26 Cl -0.058 7.058 27 C -0.108 4.108 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.284 0.716 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.190 0.810 36 H 0.173 0.827 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -21.812 -2.419 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 C -0.243 4.243 4 C 0.320 3.680 5 O -0.468 6.468 6 N -0.147 5.147 7 C -0.468 4.468 8 H 0.103 0.897 9 C -0.194 4.194 10 N -0.513 5.513 11 Si 0.806 3.194 12 H -0.199 1.199 13 H -0.194 1.194 14 H -0.193 1.193 15 C 0.065 3.935 16 C -0.080 4.080 17 N -0.172 5.172 18 N -0.093 5.093 19 N -0.066 5.066 20 N -0.093 5.093 21 C 0.026 3.974 22 C -0.126 4.126 23 C -0.087 4.087 24 C -0.107 4.107 25 C -0.056 4.056 26 Cl -0.029 7.029 27 C -0.128 4.128 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.208 0.792 36 H 0.191 0.809 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.228 -22.327 -0.950 23.199 hybrid contribution -0.280 1.272 0.169 1.314 sum -6.509 -21.055 -0.781 22.052 Atomic orbital electron populations 1.20915 0.81917 1.05960 1.06067 1.22385 0.97517 0.84564 0.96060 1.21545 0.89027 0.96175 1.17574 1.17134 0.85770 0.82573 0.82498 1.90567 1.16248 1.83419 1.56580 1.43316 1.03870 1.05568 1.61953 1.19630 1.15820 0.81048 1.30266 0.89713 1.26067 0.96290 1.03738 0.93311 1.69778 1.29534 1.36399 1.15558 0.85062 0.78971 0.77013 0.78332 1.19866 1.19383 1.19282 1.19575 0.82694 1.05666 0.85598 1.30309 0.92216 0.90093 0.95356 1.80926 1.11198 1.12557 1.12500 1.74729 1.19874 1.03980 1.10757 1.81975 0.96729 1.03560 1.24290 1.47555 1.06141 1.05468 1.50186 1.17665 0.99472 0.78815 1.01417 1.21596 0.95080 0.99014 0.96893 1.21499 0.99850 0.89826 0.97565 1.21681 0.92593 1.02832 0.93613 1.20781 0.97457 0.89314 0.98021 1.98402 1.78171 1.57752 1.68587 1.20812 1.00813 0.92001 0.99214 0.86608 0.87614 0.88678 0.90613 0.85973 0.83274 0.82491 0.79243 0.80910 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 8.31 71.24 0.59 -1.57 16 2 C 0.13 4.25 6.84 41.69 0.29 4.54 16 3 C -0.10 -4.36 6.61 40.80 0.27 -4.09 16 4 C 0.53 25.94 7.57 86.66 0.66 26.60 16 5 O -0.58 -29.91 14.51 -4.12 -0.06 -29.97 16 6 N -0.43 -21.78 2.54 -649.14 -1.65 -23.43 16 7 C -0.34 -18.15 9.02 84.07 0.76 -17.39 16 8 H 0.09 4.73 7.69 -2.91 -0.02 4.71 16 9 C 0.01 0.49 4.96 84.94 0.42 0.91 16 10 N -0.88 -43.20 11.11 21.67 0.24 -42.96 16 11 Si 0.98 39.91 29.61 68.60 2.03 41.94 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 15 C 0.19 8.83 5.07 84.57 0.43 9.26 16 16 C 0.24 11.15 14.17 89.44 1.27 12.42 16 17 N -0.49 -23.80 18.54 20.00 0.37 -23.43 16 18 N -0.22 -9.21 7.83 -49.99 -0.39 -9.61 16 19 N -0.09 -3.33 13.63 37.02 0.50 -2.82 16 20 N -0.31 -9.54 3.72 -175.12 -0.65 -10.20 16 21 C 0.12 2.60 6.17 38.08 0.23 2.83 16 22 C -0.11 -1.45 8.53 22.39 0.19 -1.26 16 23 C -0.07 -0.50 10.04 22.25 0.22 -0.28 16 24 C -0.09 -0.81 9.83 22.31 0.22 -0.59 16 25 C -0.03 -0.45 6.32 22.31 0.14 -0.31 16 26 Cl -0.06 -0.93 28.95 -2.72 -0.08 -1.01 16 27 C -0.11 -2.32 9.63 22.41 0.22 -2.10 16 28 H 0.12 2.18 7.87 -2.38 -0.02 2.16 16 29 H 0.11 1.76 7.35 -2.39 -0.02 1.74 16 30 H 0.09 2.84 6.32 -2.39 -0.02 2.83 16 31 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 32 H 0.12 5.36 5.74 -2.39 -0.01 5.34 16 33 H 0.15 7.08 5.09 -2.38 -0.01 7.07 16 34 H 0.16 1.73 6.81 -2.91 -0.02 1.71 16 35 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 37 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -68.86 344.17 7.38 -61.47 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.16 Total: 11.04 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 5.90 Total: 28.96 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -1.57 Total: -112.44 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.06 Total: -29.97 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -68.86 7.38 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126544007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.913 kcal (2) G-P(sol) polarization free energy of solvation -68.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds