Wall clock time and date at job start Wed Apr 1 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 119.93568 * 2 1 4 4 C 1.38432 * 120.34678 * 180.02562 * 3 2 1 5 5 S 1.76201 * 119.88577 * 179.97438 * 4 3 2 6 6 O 1.42102 * 106.39879 * 203.53762 * 5 4 3 7 7 O 1.42094 * 106.40012 * 336.45473 * 5 4 3 8 8 N 1.65595 * 107.22138 * 90.00041 * 5 4 3 9 9 C 1.46504 * 119.99381 * 269.99949 * 8 5 4 10 10 C 1.46490 * 120.00270 * 89.99659 * 8 5 4 11 11 H 1.09001 * 109.47307 * 0.02562 * 10 8 5 12 12 C 1.52997 * 109.47509 * 239.99896 * 10 8 5 13 13 C 1.50704 * 109.47049 * 120.00312 * 10 8 5 14 14 H 1.07996 * 120.00034 * 359.97438 * 13 10 8 15 15 C 1.37876 * 120.00190 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99695 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00255 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46934 * 89.99924 * 17 15 13 19 19 H 1.48501 * 109.47475 * 209.99978 * 17 15 13 20 20 H 1.48502 * 109.47345 * 330.00271 * 17 15 13 21 21 C 1.37880 * 120.22689 * 359.97438 * 4 3 2 22 22 C 1.39674 * 119.87130 * 0.02562 * 21 4 3 23 23 C 1.47570 * 120.17191 * 180.02562 * 22 21 4 24 24 O 1.21485 * 119.99921 * 180.02562 * 23 22 21 25 25 O 1.34730 * 119.99870 * 359.97438 * 23 22 21 26 26 C 1.38274 * 119.93981 * 179.72427 * 2 1 3 27 27 F 1.35099 * 120.11231 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.47152 * 89.99946 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00046 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00027 * 1 2 3 31 31 H 1.07998 * 119.82792 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47096 * 90.00128 * 9 8 5 33 33 H 1.09004 * 109.46797 * 209.99749 * 9 8 5 34 34 H 1.08998 * 109.47529 * 329.99590 * 9 8 5 35 35 H 1.09001 * 109.47211 * 300.00518 * 12 10 8 36 36 H 1.09000 * 109.46766 * 60.00187 * 12 10 8 37 37 H 1.08997 * 109.47528 * 179.97438 * 12 10 8 38 38 H 0.97000 * 119.99886 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.06405 * 180.02562 * 21 4 3 40 40 H 0.96703 * 116.99750 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1981 0.0000 4 6 3.5812 1.2080 -0.0005 5 16 4.4482 2.7420 -0.0012 6 8 5.7334 2.4762 -0.5460 7 8 3.5575 3.7060 -0.5456 8 7 4.6901 3.1691 1.5803 9 6 3.6924 3.9824 2.2801 10 6 5.9014 2.7338 2.2796 11 1 6.5195 2.1438 1.6029 12 6 5.5135 1.8822 3.4900 13 6 6.6756 3.9412 2.7424 14 1 6.3028 4.9334 2.5358 15 6 7.8604 3.7790 3.4286 16 7 8.3147 2.5706 3.6797 17 14 8.8204 5.2754 4.0016 18 1 8.3718 5.6593 5.3642 19 1 10.2697 4.9528 4.0301 20 1 8.5828 6.4040 3.0660 21 6 4.2839 0.0217 -0.0005 22 6 3.5963 -1.1941 -0.0005 23 6 4.3417 -2.4677 0.0000 24 8 3.7404 -3.5234 -0.0005 25 8 5.6889 -2.4598 0.0000 26 6 2.1971 -1.1982 0.0058 27 9 1.5227 -2.3688 0.0109 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6531 2.1311 -0.0004 32 1 2.9621 3.3296 2.7582 33 1 4.1864 4.5912 3.0374 34 1 3.1865 4.6315 1.5653 35 1 4.8956 2.4726 4.1666 36 1 4.9535 1.0090 3.1553 37 1 6.4148 1.5579 4.0101 38 1 9.1481 2.4564 4.1628 39 1 5.3638 0.0325 -0.0005 40 1 6.1330 -3.3188 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127634794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:33 Heat of formation + Delta-G solvation = -178.988458 kcal Electronic energy + Delta-G solvation = -29099.173418 eV Core-core repulsion = 24727.901300 eV Total energy + Delta-G solvation = -4371.272117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33545 -40.47963 -39.03193 -36.88381 -36.27874 -36.22322 -35.40975 -33.42313 -32.65623 -31.43148 -29.18940 -27.48488 -25.63364 -25.27010 -25.17147 -22.84971 -21.64967 -20.79905 -18.51734 -18.19918 -18.03624 -17.42801 -16.94617 -16.91007 -16.40420 -16.33514 -16.13418 -15.45977 -15.27547 -14.57527 -14.29817 -13.79968 -13.70069 -13.63277 -13.53000 -13.33949 -13.14691 -12.81696 -12.51671 -12.41048 -12.11420 -12.00027 -11.90790 -11.70588 -11.59222 -11.44453 -11.29576 -11.01815 -10.98209 -10.86733 -10.69313 -10.47620 -10.29821 -10.11108 -9.53710 -9.35353 -9.20434 -8.51110 -8.08856 -6.12819 -4.19873 0.11628 0.55166 0.83038 2.12843 2.69898 3.04272 3.25545 3.33230 3.36618 3.54790 3.68175 4.10128 4.13363 4.35665 4.50423 4.55748 4.79091 4.92529 5.02158 5.19316 5.27610 5.31170 5.37316 5.59319 5.60174 5.69312 5.73317 5.79854 6.01322 6.23257 6.25379 6.32377 6.58191 6.70916 6.75516 6.94327 7.31970 7.54384 7.68289 7.71294 7.97248 8.19294 8.81841 9.46136 10.92861 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.004015 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.266828 B = 6972.350442 C = 8032.161016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C 0.041 3.959 4 C -0.696 4.696 5 S 2.683 3.317 6 O -0.944 6.944 7 O -0.968 6.968 8 N -0.975 5.975 9 C 0.092 3.908 10 C 0.265 3.735 11 H 0.062 0.938 12 C -0.149 4.149 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.067 3.933 22 C -0.185 4.185 23 C 0.532 3.468 24 O -0.506 6.506 25 O -0.501 6.501 26 C 0.207 3.793 27 F -0.107 7.107 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.009 0.991 37 H 0.094 0.906 38 H 0.264 0.736 39 H 0.168 0.832 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -6.065 -5.226 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.157 4.157 3 C 0.022 3.978 4 C -0.778 4.778 5 S 2.770 3.230 6 O -0.934 6.934 7 O -0.959 6.959 8 N -0.816 5.816 9 C -0.054 4.054 10 C 0.163 3.837 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.561 4.561 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.048 3.952 22 C -0.188 4.188 23 C 0.376 3.624 24 O -0.396 6.396 25 O -0.313 6.313 26 C 0.187 3.813 27 F -0.085 7.085 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.185 0.815 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.411 -5.703 -5.875 14.869 hybrid contribution 0.427 -0.812 0.780 1.204 sum -11.985 -6.515 -5.095 14.562 Atomic orbital electron populations 1.20756 0.88654 1.04071 1.03416 1.19982 0.97878 0.91133 1.06721 1.20987 0.91939 0.98293 0.86585 1.31767 1.06171 1.22500 1.17372 1.02407 0.73453 0.73281 0.73837 1.93601 1.37698 1.85290 1.76804 1.93512 1.67287 1.57545 1.77524 1.57412 1.30199 1.63394 1.30600 1.21406 0.90793 0.94791 0.98436 1.18850 0.78955 0.95141 0.90790 0.92012 1.22142 1.01841 0.96861 1.00036 1.21289 1.05991 0.92605 1.36226 0.91707 1.24898 0.97060 0.96148 0.95655 1.69852 1.21491 1.20702 1.40626 0.86484 0.79131 0.82783 0.78946 1.20660 1.21107 1.19755 1.21234 1.01576 0.88757 0.83667 1.19136 0.91402 0.92782 1.15448 1.20371 0.80988 0.88523 0.72537 1.90941 1.69848 1.32764 1.46029 1.84595 1.20033 1.41229 1.85446 1.17666 0.88075 0.81695 0.93905 1.91599 1.79602 1.45258 1.92030 0.90289 0.90094 0.90770 0.82579 0.94222 0.89285 0.91513 0.94628 0.97219 0.88727 0.92600 0.81492 0.72208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.84 36.01 0.35 -0.57 16 2 C -0.16 -1.80 5.88 -104.60 -0.62 -2.41 16 3 C 0.04 0.51 9.16 -39.50 -0.36 0.14 16 4 C -0.70 -10.32 5.97 -39.64 -0.24 -10.56 16 5 S 2.68 47.95 5.68 -107.50 -0.61 47.34 16 6 O -0.94 -19.93 15.83 -57.17 -0.91 -20.83 16 7 O -0.97 -17.58 15.87 -57.17 -0.91 -18.49 16 8 N -0.98 -18.53 3.06 -115.86 -0.35 -18.88 16 9 C 0.09 1.46 9.65 59.85 0.58 2.03 16 10 C 0.27 6.05 2.62 -69.09 -0.18 5.87 16 11 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 12 C -0.15 -3.21 8.97 37.16 0.33 -2.88 16 13 C -0.52 -13.22 7.99 -34.44 -0.28 -13.50 16 14 H 0.06 1.62 7.33 -52.49 -0.38 1.24 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -23.68 11.32 55.43 0.63 -23.06 16 17 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.07 1.00 9.08 -39.18 -0.36 0.64 16 22 C -0.18 -2.66 5.88 -104.93 -0.62 -3.27 16 23 C 0.53 7.51 8.27 34.54 0.29 7.80 16 24 O -0.51 -8.12 16.13 -19.25 -0.31 -8.44 16 25 O -0.50 -5.80 12.68 -40.57 -0.51 -6.31 16 26 C 0.21 2.79 7.23 -38.94 -0.28 2.51 16 27 F -0.11 -1.49 14.76 2.25 0.03 -1.46 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 31 H 0.16 1.57 7.60 -52.49 -0.40 1.17 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 34 H 0.07 0.95 7.02 -51.93 -0.36 0.59 16 35 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.17 2.52 7.16 -52.49 -0.38 2.14 16 40 H 0.42 2.71 9.11 45.56 0.42 3.13 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -32.36 356.37 -7.83 -40.18 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.76 Total: 1.93 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.47 Total: -12.61 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.27 Total: -41.94 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -2.64 Total: -54.07 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.46 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 47.95 SS G_CDS: -0.61 Total: 47.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.36 -7.83 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127634794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.804 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds