Wall clock time and date at job start Wed Apr 1 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86791 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47285 * 300.00230 * 3 2 1 6 6 H 1.48502 * 109.47095 * 59.99810 * 3 2 1 7 7 C 1.39057 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00138 * 179.97438 * 7 2 1 9 9 N 1.36874 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99692 * 179.97438 * 9 7 2 11 11 O 1.21594 * 120.00398 * 0.02562 * 10 9 7 12 12 C 1.47729 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.39643 * 120.15191 * 180.02562 * 12 10 9 14 14 C 1.37936 * 119.85216 * 180.02562 * 13 12 10 15 15 C 1.38378 * 120.14510 * 359.97438 * 14 13 12 16 16 S 1.76200 * 119.84285 * 179.97438 * 15 14 13 17 17 O 1.42096 * 104.27952 * 333.92532 * 16 15 14 18 18 O 1.42107 * 104.27722 * 206.07166 * 16 15 14 19 19 C 1.81398 * 104.45192 * 90.00355 * 16 15 14 20 20 C 1.50701 * 109.47126 * 179.97438 * 19 16 15 21 21 C 1.38235 * 119.99808 * 89.99763 * 20 19 16 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.86117 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97508 * 20 19 16 26 26 C 1.38372 * 120.31035 * 0.25700 * 15 14 13 27 27 C 1.37945 * 120.14545 * 359.48887 * 26 15 14 28 28 H 0.96992 * 120.00181 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00222 * 359.97438 * 9 7 2 30 30 H 1.08004 * 120.07779 * 359.97438 * 13 12 10 31 31 H 1.07998 * 119.92858 * 179.97438 * 14 13 12 32 32 H 1.08993 * 109.47581 * 59.99311 * 19 16 15 33 33 H 1.09001 * 109.46610 * 299.99236 * 19 16 15 34 34 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 35 35 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.99666 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99729 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 39 39 H 1.07993 * 119.92842 * 179.74461 * 26 15 14 40 40 H 1.07997 * 120.07134 * 180.25405 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 3.7076 1.3463 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2043 0.0005 8 1 3.0888 -1.2043 0.0001 9 7 1.3245 -2.3896 0.0005 10 6 1.9983 -3.5568 0.0005 11 8 3.2143 -3.5569 0.0010 12 6 1.2597 -4.8361 0.0000 13 6 1.9546 -6.0473 0.0005 14 6 1.2587 -7.2383 -0.0006 15 6 -0.1251 -7.2345 -0.0016 16 16 -1.0061 -8.7604 -0.0037 17 8 -0.1096 -9.6819 -0.6091 18 8 -2.2521 -8.4449 -0.6096 19 6 -1.2339 -9.1540 1.7524 20 6 -1.9851 -10.4539 1.8825 21 6 -1.2932 -11.6491 1.9423 22 6 -1.9823 -12.8415 2.0622 23 6 -3.3634 -12.8387 2.1202 24 6 -4.0553 -11.6434 2.0613 25 6 -3.3661 -10.4510 1.9424 26 6 -0.8202 -6.0380 -0.0070 27 6 -0.1367 -4.8398 -0.0007 28 1 -0.4850 0.8400 0.0004 29 1 0.3545 -2.3896 0.0005 30 1 3.0347 -6.0517 0.0009 31 1 1.7949 -8.1757 -0.0006 32 1 -1.8014 -8.3571 2.2327 33 1 -0.2600 -9.2471 2.2331 34 1 -0.2144 -11.6518 1.8910 35 1 -1.4417 -13.7753 2.1085 36 1 -3.9018 -13.7703 2.2135 37 1 -5.1343 -11.6413 2.1070 38 1 -3.9068 -9.5173 1.8956 39 1 -1.9001 -6.0423 -0.0120 40 1 -0.6805 -3.9067 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132389725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:07 Heat of formation + Delta-G solvation = -55.472094 kcal Electronic energy + Delta-G solvation = -26006.607366 eV Core-core repulsion = 22071.460545 eV Total energy + Delta-G solvation = -3935.146821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.62359 -39.42770 -37.53240 -37.14453 -35.96521 -34.31295 -33.42486 -31.92847 -31.28497 -30.94713 -30.67310 -27.74314 -25.68433 -23.55613 -22.99217 -22.44515 -21.94505 -19.89065 -19.02699 -18.48550 -17.75391 -17.29587 -16.66859 -16.29623 -16.11664 -15.50035 -15.38426 -15.04806 -14.66923 -14.48784 -13.87383 -13.85863 -13.79575 -13.75053 -13.48258 -13.31573 -13.16355 -13.00677 -12.49664 -12.38605 -12.12062 -12.01548 -11.81006 -11.74426 -11.40583 -11.32165 -11.27819 -11.05413 -10.70139 -10.52768 -10.47096 -9.84853 -9.30899 -9.16802 -8.95662 -8.87845 -8.68653 -8.30058 -6.79292 -4.07199 -0.18021 0.72779 0.99736 1.01889 1.52365 2.81900 2.97427 3.10792 3.17893 3.26136 3.39224 3.75508 3.91700 3.94879 4.10907 4.27528 4.44158 4.63329 4.63966 4.74452 4.75720 4.96891 5.02222 5.08242 5.08727 5.11702 5.21320 5.48758 5.56960 5.57313 5.65659 5.79221 5.85796 6.05101 6.09243 6.09454 6.13145 6.24849 6.42071 6.57441 6.67041 7.00741 7.21521 7.74227 8.27291 8.83908 9.17632 9.75965 10.36420 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.002116 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.647796 B =13231.702053 C =13743.025260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.288 4.288 8 H 0.113 0.887 9 N -0.531 5.531 10 C 0.446 3.554 11 O -0.595 6.595 12 C -0.033 4.033 13 C -0.103 4.103 14 C -0.031 4.031 15 C -0.673 4.673 16 S 2.498 3.502 17 O -0.935 6.935 18 O -0.934 6.934 19 C -0.566 4.566 20 C -0.094 4.094 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.104 4.104 26 C -0.026 4.026 27 C -0.131 4.131 28 H 0.280 0.720 29 H 0.395 0.605 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 -20.799 6.080 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.418 4.418 8 H 0.131 0.869 9 N -0.164 5.164 10 C 0.235 3.765 11 O -0.482 6.482 12 C -0.037 4.037 13 C -0.124 4.124 14 C -0.050 4.050 15 C -0.763 4.763 16 S 2.680 3.320 17 O -0.932 6.932 18 O -0.931 6.931 19 C -0.693 4.693 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.045 4.045 27 C -0.152 4.152 28 H 0.090 0.910 29 H 0.231 0.769 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.349 -20.984 5.352 23.209 hybrid contribution 0.057 1.539 0.661 1.676 sum -8.293 -19.445 6.012 21.978 Atomic orbital electron populations 1.69587 1.06304 1.29273 1.46403 1.25511 0.95785 1.00517 0.96324 0.85642 0.79844 0.79946 0.78112 1.18752 1.20256 1.20277 1.20029 0.94061 0.81977 1.45745 0.86929 1.42033 1.09737 1.04954 1.59633 1.17691 0.87637 0.83173 0.87953 1.90620 1.12934 1.86686 1.57980 1.20744 0.93552 0.95374 0.94066 1.21322 1.01122 0.90685 0.99227 1.20798 0.91751 0.99003 0.93447 1.30281 1.06006 1.18418 1.21546 1.05417 0.74787 0.74588 0.77193 1.93549 1.64822 1.62305 1.72503 1.93555 1.43265 1.83824 1.72470 1.29383 1.10033 1.03855 1.26007 1.19009 0.93783 0.92303 1.04457 1.21230 1.00630 0.91831 0.98628 1.21199 0.94495 0.98051 0.99938 1.21297 0.94493 0.98317 0.98974 1.21202 1.00327 0.92236 0.99893 1.21234 0.93180 0.99308 0.98566 1.20773 0.99904 0.90915 0.92877 1.21538 0.93765 0.98608 1.01262 0.91013 0.76945 0.84088 0.84283 0.83555 0.83584 0.84985 0.85366 0.85616 0.85348 0.84955 0.84229 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.18 13.05 55.50 0.72 -21.46 16 2 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 3 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.29 -7.64 9.68 -15.00 -0.15 -7.79 16 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 9 N -0.53 -13.11 5.23 -11.87 -0.06 -13.17 16 10 C 0.45 10.73 7.72 -12.38 -0.10 10.64 16 11 O -0.59 -16.17 15.92 5.28 0.08 -16.09 16 12 C -0.03 -0.64 5.87 -104.97 -0.62 -1.26 16 13 C -0.10 -1.78 9.60 -39.17 -0.38 -2.16 16 14 C -0.03 -0.44 9.45 -39.64 -0.37 -0.82 16 15 C -0.67 -9.31 5.67 -39.48 -0.22 -9.53 16 16 S 2.50 30.18 5.14 -107.50 -0.55 29.63 16 17 O -0.93 -13.49 17.11 -57.54 -0.98 -14.48 16 18 O -0.93 -13.59 17.10 -57.54 -0.98 -14.57 16 19 C -0.57 -4.70 6.11 36.01 0.22 -4.48 16 20 C -0.09 -0.89 5.14 -104.63 -0.54 -1.42 16 21 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 26 C -0.03 -0.37 9.45 -39.64 -0.37 -0.74 16 27 C -0.13 -2.21 9.54 -39.17 -0.37 -2.58 16 28 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.40 9.14 5.93 -40.82 -0.24 8.90 16 30 H 0.14 2.41 7.65 -52.48 -0.40 2.01 16 31 H 0.14 1.63 7.56 -52.49 -0.40 1.23 16 32 H 0.15 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.15 0.89 8.09 -51.92 -0.42 0.47 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 1.66 7.55 -52.49 -0.40 1.26 16 40 H 0.14 2.18 6.41 -52.49 -0.34 1.85 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -34.35 364.71 -10.49 -44.84 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.24 Total: 11.34 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -4.95 Total: -26.10 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.66 Total: -34.62 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.88 Total: -45.14 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 30.18 SS G_CDS: -0.55 Total: 29.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.35 -10.49 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132389725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.628 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds