Wall clock time and date at job start Wed Apr 1 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86791 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47285 * 300.00230 * 3 2 1 6 6 H 1.48502 * 109.47095 * 59.99810 * 3 2 1 7 7 C 1.39057 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00138 * 179.97438 * 7 2 1 9 9 N 1.36874 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99692 * 179.97438 * 9 7 2 11 11 O 1.21594 * 120.00398 * 0.02562 * 10 9 7 12 12 C 1.47729 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.39643 * 120.15191 * 180.02562 * 12 10 9 14 14 C 1.37936 * 119.85216 * 180.02562 * 13 12 10 15 15 C 1.38378 * 120.14510 * 359.97438 * 14 13 12 16 16 S 1.76200 * 119.84285 * 179.97438 * 15 14 13 17 17 O 1.42096 * 104.27952 * 333.92532 * 16 15 14 18 18 O 1.42107 * 104.27722 * 206.07166 * 16 15 14 19 19 C 1.81398 * 104.45192 * 90.00355 * 16 15 14 20 20 C 1.50701 * 109.47126 * 179.97438 * 19 16 15 21 21 C 1.38235 * 119.99808 * 89.99763 * 20 19 16 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.86117 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97508 * 20 19 16 26 26 C 1.38372 * 120.31035 * 0.25700 * 15 14 13 27 27 C 1.37945 * 120.14545 * 359.48887 * 26 15 14 28 28 H 0.96992 * 120.00181 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00222 * 359.97438 * 9 7 2 30 30 H 1.08004 * 120.07779 * 359.97438 * 13 12 10 31 31 H 1.07998 * 119.92858 * 179.97438 * 14 13 12 32 32 H 1.08993 * 109.47581 * 59.99311 * 19 16 15 33 33 H 1.09001 * 109.46610 * 299.99236 * 19 16 15 34 34 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 35 35 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.99666 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99729 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 39 39 H 1.07993 * 119.92842 * 179.74461 * 26 15 14 40 40 H 1.07997 * 120.07134 * 180.25405 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 3.7076 1.3463 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2043 0.0005 8 1 3.0888 -1.2043 0.0001 9 7 1.3245 -2.3896 0.0005 10 6 1.9983 -3.5568 0.0005 11 8 3.2143 -3.5569 0.0010 12 6 1.2597 -4.8361 0.0000 13 6 1.9546 -6.0473 0.0005 14 6 1.2587 -7.2383 -0.0006 15 6 -0.1251 -7.2345 -0.0016 16 16 -1.0061 -8.7604 -0.0037 17 8 -0.1096 -9.6819 -0.6091 18 8 -2.2521 -8.4449 -0.6096 19 6 -1.2339 -9.1540 1.7524 20 6 -1.9851 -10.4539 1.8825 21 6 -1.2932 -11.6491 1.9423 22 6 -1.9823 -12.8415 2.0622 23 6 -3.3634 -12.8387 2.1202 24 6 -4.0553 -11.6434 2.0613 25 6 -3.3661 -10.4510 1.9424 26 6 -0.8202 -6.0380 -0.0070 27 6 -0.1367 -4.8398 -0.0007 28 1 -0.4850 0.8400 0.0004 29 1 0.3545 -2.3896 0.0005 30 1 3.0347 -6.0517 0.0009 31 1 1.7949 -8.1757 -0.0006 32 1 -1.8014 -8.3571 2.2327 33 1 -0.2600 -9.2471 2.2331 34 1 -0.2144 -11.6518 1.8910 35 1 -1.4417 -13.7753 2.1085 36 1 -3.9018 -13.7703 2.2135 37 1 -5.1343 -11.6413 2.1070 38 1 -3.9068 -9.5173 1.8956 39 1 -1.9001 -6.0423 -0.0120 40 1 -0.6805 -3.9067 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132389725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:06 Heat of formation + Delta-G solvation = -78.376404 kcal Electronic energy + Delta-G solvation = -26007.600572 eV Core-core repulsion = 22071.460545 eV Total energy + Delta-G solvation = -3936.140027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00750 -40.17840 -39.18074 -38.19444 -37.01488 -36.24208 -34.03444 -33.72220 -32.38319 -32.05421 -31.83355 -28.39516 -27.47585 -25.04895 -23.76200 -23.54191 -22.57739 -21.53787 -20.35066 -20.04097 -18.99337 -18.21262 -17.94021 -17.22113 -17.06718 -16.86184 -16.28778 -16.05625 -15.96356 -15.83744 -15.68008 -15.42635 -15.08577 -14.59189 -14.32750 -14.30800 -13.96007 -13.82500 -13.78158 -13.62044 -13.61363 -13.17254 -13.08429 -13.00934 -12.62380 -12.35186 -12.23446 -12.14920 -12.14129 -11.93039 -11.77803 -11.68855 -10.64496 -10.46961 -10.20408 -10.15215 -9.87841 -9.68685 -8.66066 -6.09479 -1.12610 -0.58967 0.22964 0.40077 0.45148 1.32473 1.39460 1.54049 1.73588 1.87121 2.20421 2.54783 2.78553 2.92352 2.92849 3.08294 3.17717 3.40561 3.64934 3.81921 3.84275 4.02803 4.12613 4.18951 4.24074 4.29101 4.40166 4.53592 4.54070 4.58410 4.67626 4.86118 4.94290 5.01219 5.03018 5.12920 5.25977 5.29183 5.49635 5.50873 5.58819 5.69463 5.82544 6.03914 6.37692 6.91516 7.29260 7.86666 8.50689 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.002116 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.647796 B =13231.702053 C =13743.025260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.007 4.007 3 Si 1.002 2.998 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.541 5.541 10 C 0.448 3.552 11 O -0.634 6.634 12 C -0.065 4.065 13 C -0.108 4.108 14 C -0.025 4.025 15 C -0.658 4.658 16 S 2.504 3.496 17 O -0.960 6.960 18 O -0.960 6.960 19 C -0.539 4.539 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.024 4.024 27 C -0.128 4.128 28 H 0.286 0.714 29 H 0.400 0.600 30 H 0.136 0.864 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.170 0.830 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.509 -23.195 7.158 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.175 5.175 10 C 0.237 3.763 11 O -0.524 6.524 12 C -0.069 4.069 13 C -0.128 4.128 14 C -0.044 4.044 15 C -0.744 4.744 16 S 2.688 3.312 17 O -0.957 6.957 18 O -0.957 6.957 19 C -0.670 4.670 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.043 4.043 27 C -0.149 4.149 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.154 0.846 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.192 0.808 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.188 0.812 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.105 -23.356 6.378 26.235 hybrid contribution 0.456 1.812 0.386 1.908 sum -9.649 -21.544 6.763 24.556 Atomic orbital electron populations 1.69628 1.07086 1.30323 1.47017 1.26265 0.96658 1.02896 0.95113 0.84740 0.78057 0.76052 0.78726 1.19535 1.19199 1.19005 1.19908 0.93295 0.83557 1.49827 0.89474 1.41974 1.09822 1.04831 1.60834 1.18450 0.87460 0.84532 0.85827 1.90564 1.14951 1.87735 1.59112 1.20482 0.94657 0.93732 0.97990 1.21415 1.01166 0.91036 0.99221 1.21122 0.92206 0.99025 0.92003 1.30838 1.06000 1.19609 1.17971 1.05410 0.73533 0.73147 0.79082 1.93518 1.65362 1.62042 1.74791 1.93523 1.43651 1.83789 1.74785 1.29171 1.12239 1.04566 1.21024 1.19180 0.94211 0.92673 1.05843 1.21550 1.01523 0.92189 0.98652 1.21554 0.95023 0.98679 0.99464 1.21679 0.94646 0.99260 0.97699 1.21549 1.01554 0.92163 0.99478 1.21547 0.93394 1.00349 0.98669 1.21118 1.01441 0.90001 0.91712 1.21610 0.92628 0.99970 1.00644 0.90390 0.76401 0.84637 0.81148 0.80864 0.80802 0.83873 0.83385 0.83277 0.83440 0.83949 0.81212 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.49 13.05 21.68 0.28 -46.21 16 2 C -0.01 -0.35 5.50 84.96 0.47 0.12 16 3 Si 1.00 41.00 29.55 68.60 2.03 43.02 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.34 -18.83 9.68 84.10 0.81 -18.01 16 8 H 0.09 5.18 7.15 -2.91 -0.02 5.16 16 9 N -0.54 -28.15 5.23 -309.73 -1.62 -29.77 16 10 C 0.45 22.63 7.72 86.75 0.67 23.30 16 11 O -0.63 -36.45 15.92 -4.01 -0.06 -36.52 16 12 C -0.07 -2.59 5.87 -20.09 -0.12 -2.70 16 13 C -0.11 -3.72 9.60 22.54 0.22 -3.50 16 14 C -0.03 -0.67 9.45 22.23 0.21 -0.46 16 15 C -0.66 -16.46 5.67 22.34 0.13 -16.33 16 16 S 2.50 53.16 5.14 -56.49 -0.29 52.87 16 17 O -0.96 -25.31 17.11 -127.65 -2.18 -27.50 16 18 O -0.96 -25.56 17.10 -127.65 -2.18 -27.75 16 19 C -0.54 -6.81 6.11 71.24 0.44 -6.38 16 20 C -0.12 -1.83 5.14 -19.87 -0.10 -1.93 16 21 C -0.12 -1.77 9.70 22.27 0.22 -1.56 16 22 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 23 C -0.11 -1.31 10.05 22.27 0.22 -1.09 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 25 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 26 C -0.02 -0.65 9.45 22.23 0.21 -0.44 16 27 C -0.13 -4.27 9.54 22.54 0.22 -4.06 16 28 H 0.29 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.40 19.40 5.93 -92.71 -0.55 18.85 16 30 H 0.14 4.74 7.65 -2.91 -0.02 4.72 16 31 H 0.17 3.47 7.56 -2.91 -0.02 3.45 16 32 H 0.17 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.17 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.17 3.51 7.55 -2.91 -0.02 3.49 16 40 H 0.14 4.47 6.41 -2.91 -0.02 4.45 16 Total: -1.00 -77.93 364.71 0.76 -77.17 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.54 Total: 32.11 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.25 Total: -37.44 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.34 Total: -75.98 kcal Atomic # 8 Polarization: -87.33 SS G_CDS: -4.43 Total: -91.76 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.29 Total: 52.87 kcal Total: -77.93 0.76 -77.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132389725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.205 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds