Wall clock time and date at job start Wed Apr 1 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34728 * 116.99941 * 2 1 4 4 O 1.21490 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47562 * 120.00014 * 180.02562 * 3 2 1 6 6 C 1.39717 * 120.17409 * 359.97438 * 5 3 2 7 7 C 1.37834 * 119.87652 * 179.97438 * 6 5 3 8 8 S 1.76199 * 119.89070 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.39575 * 23.56823 * 8 7 6 10 10 O 1.42104 * 106.40233 * 156.48318 * 8 7 6 11 11 N 1.65599 * 107.22025 * 270.03007 * 8 7 6 12 12 C 1.46496 * 120.00331 * 90.00034 * 11 8 7 13 13 C 1.46497 * 119.99577 * 269.99703 * 11 8 7 14 14 H 1.08999 * 109.47641 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47213 * 119.99986 * 13 11 8 16 16 C 1.50701 * 109.47189 * 240.00133 * 13 11 8 17 17 H 1.08002 * 119.99737 * 0.02562 * 16 13 11 18 18 C 1.37880 * 120.00129 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00042 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99967 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46905 * 60.00283 * 20 18 16 22 22 H 1.48498 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47698 * 300.00474 * 20 18 16 24 24 C 1.38481 * 120.22313 * 0.02814 * 7 6 5 25 25 C 1.38206 * 120.35064 * 0.23323 * 24 7 6 26 26 C 1.38320 * 120.12143 * 359.48164 * 25 24 7 27 27 F 1.35098 * 120.11340 * 180.25547 * 26 25 24 28 28 H 1.09005 * 109.46978 * 299.99813 * 1 2 3 29 29 H 1.08998 * 109.47115 * 59.99891 * 1 2 3 30 30 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.06191 * 0.02562 * 6 5 3 32 32 H 1.08998 * 109.47264 * 89.99796 * 12 11 8 33 33 H 1.08998 * 109.47058 * 209.99877 * 12 11 8 34 34 H 1.09007 * 109.46646 * 329.99625 * 12 11 8 35 35 H 1.08997 * 109.47081 * 299.99864 * 15 13 11 36 36 H 1.08999 * 109.46403 * 60.00097 * 15 13 11 37 37 H 1.09005 * 109.47203 * 179.97438 * 15 13 11 38 38 H 0.96999 * 119.99958 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.82110 * 179.97438 * 24 7 6 40 40 H 1.08001 * 119.93763 * 179.72503 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5372 1.2777 -0.0006 6 6 4.3018 0.1082 -0.0006 7 6 5.6778 0.1876 -0.0016 8 16 6.6424 -1.2870 -0.0010 9 8 5.8158 -2.3072 -0.5445 10 8 7.9077 -0.9391 -0.5461 11 7 6.9112 -1.6963 1.5810 12 6 5.9684 -2.5718 2.2815 13 6 8.0919 -1.1828 2.2799 14 1 8.6705 -0.5546 1.6026 15 6 7.6495 -0.3569 3.4895 16 6 8.9426 -2.3370 2.7436 17 1 8.6348 -3.3516 2.5379 18 6 10.1145 -2.0978 3.4296 19 7 10.4896 -0.8623 3.6796 20 14 11.1686 -3.5285 4.0050 21 1 11.5974 -4.3309 2.8313 22 1 12.3655 -3.0081 4.7134 23 1 10.3807 -4.3841 4.9283 24 6 6.3049 1.4223 -0.0021 25 6 5.5578 2.5849 0.0033 26 6 4.1760 2.5222 -0.0015 27 9 3.4459 3.6588 -0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8154 -0.8561 -0.0006 32 1 6.2718 -3.6105 2.1514 33 1 5.9635 -2.3249 3.3432 34 1 4.9684 -2.4311 1.8712 35 1 7.0343 0.4779 3.1540 36 1 7.0712 -0.9855 4.1666 37 1 8.5281 0.0248 4.0098 38 1 11.3142 -0.6940 4.1619 39 1 7.3835 1.4768 -0.0025 40 1 6.0538 3.5443 0.0074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175269222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:25 Heat of formation + Delta-G solvation = -164.729646 kcal Electronic energy + Delta-G solvation = -28797.334931 eV Core-core repulsion = 24426.681122 eV Total energy + Delta-G solvation = -4370.653809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.32538 -40.73096 -38.95329 -36.87201 -36.67706 -36.28990 -35.40099 -32.66228 -32.10503 -31.13944 -29.18702 -28.03999 -25.70819 -25.21300 -24.63468 -23.42683 -21.72696 -20.77924 -19.01811 -18.16372 -17.85701 -17.38949 -16.94920 -16.73511 -16.63155 -16.49041 -16.09922 -15.84802 -15.27561 -14.70511 -14.55239 -13.85288 -13.73096 -13.66750 -13.63365 -13.47681 -13.14816 -12.95286 -12.69544 -12.39133 -12.10036 -12.01333 -11.83715 -11.61193 -11.44330 -11.31616 -11.09168 -11.04320 -11.02253 -10.85613 -10.70966 -10.50640 -10.35160 -10.06855 -9.59654 -9.45447 -9.34208 -8.51093 -8.08897 -6.13216 -4.19985 0.11663 0.53274 0.82857 2.09850 2.29754 3.03374 3.27763 3.32468 3.35427 3.54916 3.67525 4.09083 4.16659 4.35940 4.40269 4.54319 4.82875 4.85473 4.91449 4.91578 5.18293 5.19808 5.22850 5.40471 5.47880 5.51135 5.68955 5.74669 5.99320 6.06605 6.26888 6.30812 6.53716 6.67583 6.71751 6.91266 7.31599 7.39259 7.54190 7.70670 7.96019 8.19186 8.81889 9.46173 10.92484 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.003370 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.685163 B = 8305.713648 C = 8775.030384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.496 6.496 5 C -0.192 4.192 6 C 0.064 3.936 7 C -0.700 4.700 8 S 2.683 3.317 9 O -0.966 6.966 10 O -0.945 6.945 11 N -0.977 5.977 12 C 0.105 3.895 13 C 0.265 3.735 14 H 0.062 0.938 15 C -0.152 4.152 16 C -0.521 4.521 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.050 3.950 25 C -0.185 4.185 26 C 0.209 3.791 27 F -0.109 7.109 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.010 0.990 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.264 0.736 39 H 0.162 0.838 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 4.168 -5.170 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.357 3.643 4 O -0.384 6.384 5 C -0.194 4.194 6 C 0.045 3.955 7 C -0.783 4.783 8 S 2.770 3.230 9 O -0.956 6.956 10 O -0.935 6.935 11 N -0.818 5.818 12 C -0.041 4.041 13 C 0.163 3.837 14 H 0.080 0.920 15 C -0.211 4.211 16 C -0.561 4.561 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C 0.031 3.969 25 C -0.204 4.204 26 C 0.189 3.811 27 F -0.087 7.087 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.180 0.820 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.519 4.206 -5.812 16.195 hybrid contribution -0.181 0.253 0.753 0.814 sum -14.699 4.460 -5.059 16.173 Atomic orbital electron populations 1.23336 0.75416 1.04113 1.02730 1.86555 1.23963 1.31950 1.84237 1.20739 0.88323 0.81938 0.73260 1.90897 1.66468 1.35725 1.45351 1.19173 0.90422 0.93742 1.16108 1.21144 0.91576 0.98371 0.84433 1.31793 1.07496 1.21350 1.17617 1.02439 0.73424 0.73381 0.73765 1.93535 1.70273 1.54350 1.77476 1.93594 1.38871 1.84258 1.76777 1.57450 1.33986 1.59684 1.30646 1.21249 0.89886 0.94228 0.98707 1.18843 0.79748 0.94316 0.90787 0.92024 1.22162 1.01437 0.97346 1.00146 1.21263 1.05689 0.92891 1.36210 0.91793 1.24894 0.97293 0.95936 0.95640 1.69833 1.23599 1.18614 1.40819 0.86539 0.79609 0.82263 0.78905 1.20079 1.21234 1.20212 1.21200 1.01643 0.89671 0.84360 1.21293 0.90966 1.01248 1.06914 1.17893 0.89453 0.80860 0.92882 1.91622 1.77305 1.47731 1.92009 0.91644 0.91706 0.87562 0.81961 0.92662 0.90646 0.93013 0.97071 0.94541 0.88658 0.92558 0.82034 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.35 -4.05 9.82 -40.57 -0.40 -4.45 16 3 C 0.51 6.96 7.89 34.53 0.27 7.23 16 4 O -0.50 -7.67 15.13 -19.26 -0.29 -7.96 16 5 C -0.19 -2.58 5.88 -104.93 -0.62 -3.20 16 6 C 0.06 0.85 9.08 -39.18 -0.36 0.50 16 7 C -0.70 -10.17 5.97 -39.64 -0.24 -10.40 16 8 S 2.68 47.62 5.64 -107.50 -0.61 47.01 16 9 O -0.97 -17.84 16.34 -57.17 -0.93 -18.77 16 10 O -0.94 -19.54 15.83 -57.17 -0.91 -20.44 16 11 N -0.98 -18.48 3.06 -115.86 -0.35 -18.84 16 12 C 0.11 1.70 9.53 59.84 0.57 2.27 16 13 C 0.27 5.98 2.62 -69.08 -0.18 5.80 16 14 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 15 C -0.15 -3.19 8.95 37.16 0.33 -2.85 16 16 C -0.52 -13.20 8.37 -34.44 -0.29 -13.49 16 17 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -23.54 11.32 55.43 0.63 -22.91 16 20 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.05 0.66 9.51 -39.50 -0.38 0.29 16 25 C -0.18 -2.14 10.01 -39.56 -0.40 -2.54 16 26 C 0.21 2.74 7.29 -38.94 -0.28 2.46 16 27 F -0.11 -1.51 15.55 2.25 0.04 -1.47 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.16 1.95 7.16 -52.49 -0.38 1.57 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 34 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 37 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.16 2.00 7.60 -52.49 -0.40 1.60 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.38 357.86 -7.65 -39.02 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.61 Total: -0.84 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.59 Total: -10.99 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.27 Total: -41.75 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -2.53 Total: -51.63 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.61 Total: 47.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -7.65 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175269222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.705 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds