Wall clock time and date at job start Wed Apr 1 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34728 * 116.99941 * 2 1 4 4 O 1.21490 * 120.00215 * 0.02562 * 3 2 1 5 5 C 1.47562 * 120.00014 * 180.02562 * 3 2 1 6 6 C 1.39717 * 120.17409 * 359.97438 * 5 3 2 7 7 C 1.37834 * 119.87652 * 179.97438 * 6 5 3 8 8 S 1.76199 * 119.89070 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.39575 * 23.56823 * 8 7 6 10 10 O 1.42104 * 106.40233 * 156.48318 * 8 7 6 11 11 N 1.65599 * 107.22025 * 270.03007 * 8 7 6 12 12 C 1.46496 * 120.00331 * 90.00034 * 11 8 7 13 13 C 1.46497 * 119.99577 * 269.99703 * 11 8 7 14 14 H 1.08999 * 109.47641 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47213 * 119.99986 * 13 11 8 16 16 C 1.50701 * 109.47189 * 240.00133 * 13 11 8 17 17 H 1.08002 * 119.99737 * 0.02562 * 16 13 11 18 18 C 1.37880 * 120.00129 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00042 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99967 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46905 * 60.00283 * 20 18 16 22 22 H 1.48498 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47698 * 300.00474 * 20 18 16 24 24 C 1.38481 * 120.22313 * 0.02814 * 7 6 5 25 25 C 1.38206 * 120.35064 * 0.23323 * 24 7 6 26 26 C 1.38320 * 120.12143 * 359.48164 * 25 24 7 27 27 F 1.35098 * 120.11340 * 180.25547 * 26 25 24 28 28 H 1.09005 * 109.46978 * 299.99813 * 1 2 3 29 29 H 1.08998 * 109.47115 * 59.99891 * 1 2 3 30 30 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.06191 * 0.02562 * 6 5 3 32 32 H 1.08998 * 109.47264 * 89.99796 * 12 11 8 33 33 H 1.08998 * 109.47058 * 209.99877 * 12 11 8 34 34 H 1.09007 * 109.46646 * 329.99625 * 12 11 8 35 35 H 1.08997 * 109.47081 * 299.99864 * 15 13 11 36 36 H 1.08999 * 109.46403 * 60.00097 * 15 13 11 37 37 H 1.09005 * 109.47203 * 179.97438 * 15 13 11 38 38 H 0.96999 * 119.99958 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.82110 * 179.97438 * 24 7 6 40 40 H 1.08001 * 119.93763 * 179.72503 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5372 1.2777 -0.0006 6 6 4.3018 0.1082 -0.0006 7 6 5.6778 0.1876 -0.0016 8 16 6.6424 -1.2870 -0.0010 9 8 5.8158 -2.3072 -0.5445 10 8 7.9077 -0.9391 -0.5461 11 7 6.9112 -1.6963 1.5810 12 6 5.9684 -2.5718 2.2815 13 6 8.0919 -1.1828 2.2799 14 1 8.6705 -0.5546 1.6026 15 6 7.6495 -0.3569 3.4895 16 6 8.9426 -2.3370 2.7436 17 1 8.6348 -3.3516 2.5379 18 6 10.1145 -2.0978 3.4296 19 7 10.4896 -0.8623 3.6796 20 14 11.1686 -3.5285 4.0050 21 1 11.5974 -4.3309 2.8313 22 1 12.3655 -3.0081 4.7134 23 1 10.3807 -4.3841 4.9283 24 6 6.3049 1.4223 -0.0021 25 6 5.5578 2.5849 0.0033 26 6 4.1760 2.5222 -0.0015 27 9 3.4459 3.6588 -0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8154 -0.8561 -0.0006 32 1 6.2718 -3.6105 2.1514 33 1 5.9635 -2.3249 3.3432 34 1 4.9684 -2.4311 1.8712 35 1 7.0343 0.4779 3.1540 36 1 7.0712 -0.9855 4.1666 37 1 8.5281 0.0248 4.0098 38 1 11.3142 -0.6940 4.1619 39 1 7.3835 1.4768 -0.0025 40 1 6.0538 3.5443 0.0074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175269222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:25 Heat of formation + Delta-G solvation = -184.417341 kcal Electronic energy + Delta-G solvation = -28798.188653 eV Core-core repulsion = 24426.681122 eV Total energy + Delta-G solvation = -4371.507531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37301 -41.71728 -39.98132 -38.36395 -37.88069 -37.64711 -36.89586 -34.49136 -33.12045 -32.21496 -30.87376 -28.76571 -27.24167 -26.97668 -25.62104 -24.49741 -22.82240 -22.37525 -20.17810 -19.44239 -18.89864 -18.61743 -18.50487 -18.03557 -17.71407 -17.68612 -17.31261 -16.89439 -16.84361 -16.23796 -15.59981 -15.25156 -14.93454 -14.72611 -14.61628 -14.60571 -14.51376 -14.42691 -13.80825 -13.66786 -13.36032 -13.23616 -13.12275 -13.08842 -12.95260 -12.90222 -12.74113 -12.54995 -12.31294 -12.15309 -12.08625 -11.91385 -11.85171 -11.73565 -11.10806 -10.63051 -10.51218 -10.44087 -9.64661 -8.07164 -6.19437 -0.95760 -0.62908 -0.42657 1.07165 1.41564 1.48026 1.49729 1.56054 1.91329 2.23564 2.48502 2.64748 2.78216 3.06035 3.22102 3.36957 3.48581 3.77728 3.87358 4.09013 4.12885 4.25538 4.31338 4.45426 4.48216 4.65196 4.68289 4.72493 4.75679 4.90041 5.03805 5.08189 5.08941 5.17257 5.24869 5.30436 5.66741 5.75819 5.91708 6.16303 6.34920 6.41942 6.87367 7.49205 8.96620 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.003370 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.685163 B = 8305.713648 C = 8775.030384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.520 6.520 5 C -0.197 4.197 6 C 0.069 3.931 7 C -0.700 4.700 8 S 2.695 3.305 9 O -0.976 6.976 10 O -0.981 6.981 11 N -0.985 5.985 12 C 0.096 3.904 13 C 0.269 3.731 14 H 0.038 0.962 15 C -0.140 4.140 16 C -0.537 4.537 17 H 0.058 0.942 18 C 0.021 3.979 19 N -0.912 5.912 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.044 3.956 25 C -0.168 4.168 26 C 0.206 3.794 27 F -0.113 7.113 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.138 0.862 31 H 0.176 0.824 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.264 0.736 39 H 0.167 0.833 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 4.220 -5.065 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.360 3.640 4 O -0.411 6.411 5 C -0.200 4.200 6 C 0.049 3.951 7 C -0.787 4.787 8 S 2.787 3.213 9 O -0.967 6.967 10 O -0.972 6.972 11 N -0.825 5.825 12 C -0.049 4.049 13 C 0.166 3.834 14 H 0.056 0.944 15 C -0.200 4.200 16 C -0.577 4.577 17 H 0.077 0.923 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C 0.024 3.976 25 C -0.187 4.187 26 C 0.186 3.814 27 F -0.091 7.091 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.193 0.807 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.184 0.816 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.884 4.189 -5.700 17.388 hybrid contribution 0.117 0.265 0.655 0.716 sum -15.767 4.454 -5.046 17.143 Atomic orbital electron populations 1.23693 0.73413 1.06323 1.02993 1.86548 1.25931 1.30785 1.83606 1.20770 0.88333 0.82186 0.72695 1.90884 1.66930 1.36581 1.46709 1.19266 0.90648 0.93913 1.16203 1.21216 0.90931 0.99031 0.83873 1.31194 1.07532 1.20076 1.19925 1.01676 0.72888 0.73773 0.72965 1.93513 1.70145 1.55577 1.77443 1.93547 1.41251 1.84968 1.77421 1.57311 1.33783 1.60666 1.30749 1.21473 0.90862 0.93488 0.99079 1.18525 0.80655 0.93343 0.90924 0.94416 1.21968 1.00694 0.97977 0.99322 1.21615 1.06405 0.93611 1.36030 0.92333 1.25553 0.98442 0.97870 0.96030 1.69942 1.23858 1.19871 1.41406 0.85729 0.78336 0.79903 0.78368 1.20423 1.21001 1.19363 1.21361 1.02133 0.89711 0.84346 1.21536 0.90244 1.02028 1.04917 1.18094 0.89988 0.80656 0.92706 1.91617 1.77520 1.47916 1.92015 0.91438 0.91465 0.84415 0.80688 0.93229 0.90249 0.89713 0.94567 0.93874 0.91275 0.92674 0.81578 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.35 -7.42 9.82 -56.38 -0.55 -7.97 16 3 C 0.51 13.13 7.89 70.28 0.55 13.69 16 4 O -0.52 -15.45 15.13 19.87 0.30 -15.15 16 5 C -0.20 -4.94 5.88 -20.06 -0.12 -5.06 16 6 C 0.07 1.70 9.08 22.53 0.20 1.90 16 7 C -0.70 -19.30 5.97 22.23 0.13 -19.17 16 8 S 2.70 94.18 5.64 -56.49 -0.32 93.86 16 9 O -0.98 -35.09 16.34 -128.00 -2.09 -37.18 16 10 O -0.98 -41.06 15.83 -128.00 -2.03 -43.09 16 11 N -0.99 -36.67 3.06 -520.46 -1.59 -38.26 16 12 C 0.10 2.96 9.53 127.77 1.22 4.18 16 13 C 0.27 12.16 2.62 44.25 0.12 12.27 16 14 H 0.04 1.88 6.91 -2.39 -0.02 1.87 16 15 C -0.14 -5.81 8.95 71.98 0.64 -5.17 16 16 C -0.54 -27.38 8.37 25.60 0.21 -27.17 16 17 H 0.06 2.96 7.65 -2.91 -0.02 2.94 16 18 C 0.02 1.10 5.30 84.66 0.45 1.55 16 19 N -0.91 -48.67 11.32 21.45 0.24 -48.43 16 20 Si 0.95 41.56 29.54 68.60 2.03 43.58 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.04 1.07 9.51 22.32 0.21 1.29 16 25 C -0.17 -3.48 10.01 22.28 0.22 -3.25 16 26 C 0.21 4.95 7.29 22.69 0.17 5.12 16 27 F -0.11 -2.92 15.55 44.97 0.70 -2.22 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.18 3.80 7.16 -2.91 -0.02 3.77 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.37 6.43 -2.39 -0.02 2.35 16 34 H 0.08 2.01 7.79 -2.38 -0.02 1.99 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.68 6.66 -2.39 -0.02 1.67 16 37 H 0.07 3.26 6.07 -2.38 -0.01 3.25 16 38 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 39 H 0.17 3.95 7.60 -2.91 -0.02 3.93 16 40 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -67.07 357.86 2.98 -64.08 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.08 Total: 9.00 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.21 Total: -18.23 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.35 Total: -86.70 kcal Atomic # 8 Polarization: -99.02 SS G_CDS: -4.37 Total: -103.39 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.70 Total: -2.22 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 94.18 SS G_CDS: -0.32 Total: 93.86 kcal Total: -67.07 2.98 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175269222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.333 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds