Wall clock time and date at job start Wed Apr 1 2020 04:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34741 * 116.99781 * 2 1 4 4 O 1.21491 * 119.99472 * 359.97438 * 3 2 1 5 5 C 1.47557 * 120.00025 * 179.97438 * 3 2 1 6 6 C 1.39725 * 120.17215 * 0.26978 * 5 3 2 7 7 C 1.37836 * 119.87129 * 180.25118 * 6 5 3 8 8 S 1.76195 * 119.88771 * 179.77304 * 7 6 5 9 9 O 1.42096 * 106.40349 * 156.18610 * 8 7 6 10 10 O 1.42108 * 106.40295 * 23.26692 * 8 7 6 11 11 N 1.65606 * 107.21884 * 269.72903 * 8 7 6 12 12 C 1.46497 * 119.99739 * 269.99846 * 11 8 7 13 13 C 1.46497 * 120.00188 * 89.99923 * 11 8 7 14 14 H 1.09007 * 109.47078 * 359.97438 * 13 11 8 15 15 C 1.53000 * 109.47021 * 240.00233 * 13 11 8 16 16 C 1.50694 * 109.47115 * 120.00014 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.38474 * 120.22291 * 359.49986 * 7 6 5 25 25 C 1.38202 * 120.35480 * 0.22758 * 24 7 6 26 26 C 1.38322 * 120.11986 * 0.02628 * 25 24 7 27 27 F 1.35099 * 120.11039 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47451 * 300.00021 * 1 2 3 30 30 H 1.09002 * 109.47292 * 60.00240 * 1 2 3 31 31 H 1.07998 * 120.06040 * 0.02562 * 6 5 3 32 32 H 1.09001 * 109.46905 * 270.00036 * 12 11 8 33 33 H 1.09005 * 109.47144 * 29.99977 * 12 11 8 34 34 H 1.08993 * 109.47302 * 150.00165 * 12 11 8 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 11 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 11 37 37 H 1.09002 * 109.47106 * 299.99878 * 15 13 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 39 39 H 1.07998 * 119.82181 * 180.25178 * 24 7 6 40 40 H 1.08000 * 119.93773 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2194 -0.0005 5 6 3.5372 1.2779 0.0006 6 6 4.3018 0.1084 -0.0046 7 6 5.6779 0.1878 0.0012 8 16 6.6424 -1.2867 0.0008 9 8 7.9079 -0.9383 -0.5434 10 8 5.8162 -2.3065 -0.5441 11 7 6.9106 -1.6976 1.5825 12 6 8.0910 -1.1847 2.2824 13 6 5.9675 -2.5738 2.2818 14 1 5.1592 -2.8512 1.6052 15 6 5.3889 -1.8378 3.4920 16 6 6.6844 -3.8158 2.7448 17 1 7.7372 -3.9403 2.5384 18 6 5.9961 -4.7938 3.4310 19 7 4.7140 -4.6424 3.6819 20 14 6.8847 -6.3337 4.0042 21 1 5.9287 -7.2218 4.7132 22 1 7.4462 -7.0475 2.8293 23 1 7.9855 -5.9556 4.9263 24 6 6.3048 1.4224 0.0017 25 6 5.5577 2.5851 0.0011 26 6 4.1759 2.5223 0.0006 27 9 3.4458 3.6589 0.0005 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8154 -0.8559 -0.0094 32 1 8.9211 -1.8790 2.1515 33 1 8.3626 -0.2121 1.8721 34 1 7.8676 -1.0817 3.3442 35 1 4.8704 -0.9395 3.1571 36 1 4.6869 -2.4895 4.0120 37 1 6.1970 -1.5600 4.1687 38 1 4.2297 -5.3306 4.1643 39 1 7.3834 1.4771 0.0021 40 1 6.0537 3.5445 0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175269238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:28 Heat of formation + Delta-G solvation = -184.655791 kcal Electronic energy + Delta-G solvation = -28988.773859 eV Core-core repulsion = 24617.255988 eV Total energy + Delta-G solvation = -4371.517871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.36077 -41.73221 -39.97757 -38.36024 -37.88039 -37.67343 -36.89284 -34.49294 -33.11107 -32.19725 -30.88310 -28.79985 -27.24854 -26.96289 -25.62073 -24.52014 -22.77295 -22.42011 -20.17946 -19.45055 -18.90314 -18.61725 -18.46904 -18.10536 -17.71199 -17.63044 -17.37710 -16.89070 -16.84096 -16.22310 -15.59694 -15.23721 -14.91611 -14.73697 -14.61968 -14.60635 -14.52221 -14.42368 -13.80448 -13.66819 -13.35753 -13.25238 -13.13044 -13.10289 -12.94475 -12.90891 -12.74160 -12.55253 -12.29086 -12.16042 -12.08379 -11.94481 -11.86255 -11.74210 -11.11630 -10.62607 -10.49250 -10.44927 -9.64065 -8.07243 -6.20182 -0.94622 -0.63253 -0.41675 1.06284 1.42843 1.47698 1.49511 1.55948 1.91569 2.24166 2.48204 2.65968 2.79262 3.05533 3.21840 3.37860 3.48362 3.78870 3.88416 4.10662 4.15051 4.20441 4.27099 4.46222 4.49831 4.63809 4.65890 4.72068 4.76586 4.91539 5.01214 5.07567 5.07951 5.16621 5.27154 5.33378 5.66096 5.75264 5.91107 6.15284 6.33765 6.39318 6.87115 7.48628 8.96708 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.004110 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.900611 B = 6810.789347 C = 8148.704643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.511 3.489 4 O -0.519 6.519 5 C -0.201 4.201 6 C 0.062 3.938 7 C -0.701 4.701 8 S 2.695 3.305 9 O -0.971 6.971 10 O -0.987 6.987 11 N -0.985 5.985 12 C 0.095 3.905 13 C 0.270 3.730 14 H 0.032 0.968 15 C -0.139 4.139 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.285 1.285 22 H -0.278 1.278 23 H -0.267 1.267 24 C 0.050 3.950 25 C -0.163 4.163 26 C 0.205 3.795 27 F -0.113 7.113 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.190 0.810 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 14.531 -5.071 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.356 3.644 4 O -0.410 6.410 5 C -0.204 4.204 6 C 0.042 3.958 7 C -0.788 4.788 8 S 2.787 3.213 9 O -0.961 6.961 10 O -0.978 6.978 11 N -0.825 5.825 12 C -0.050 4.050 13 C 0.166 3.834 14 H 0.050 0.950 15 C -0.199 4.199 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.192 1.192 24 C 0.031 3.969 25 C -0.182 4.182 26 C 0.185 3.815 27 F -0.091 7.091 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.390 14.324 -5.708 15.424 hybrid contribution -0.872 -0.393 0.657 1.160 sum -1.262 13.932 -5.051 14.873 Atomic orbital electron populations 1.23675 0.73450 1.06124 1.03153 1.86596 1.26054 1.31319 1.83551 1.20916 0.88729 0.82021 0.72688 1.90861 1.66966 1.36317 1.46843 1.19278 0.90392 0.94245 1.16459 1.21112 0.92000 0.98525 0.84145 1.31200 1.07030 1.20628 1.19974 1.01678 0.73201 0.73476 0.72970 1.93512 1.40248 1.85054 1.77322 1.93547 1.70460 1.56238 1.77544 1.57304 1.33929 1.60522 1.30777 1.21507 0.85791 0.98585 0.99089 1.18485 0.87092 0.87049 0.90779 0.95007 1.21955 1.00491 0.97994 0.99412 1.21600 0.96585 1.03343 1.35944 0.92138 1.25596 0.95558 1.00853 0.96050 1.69966 1.08641 1.35260 1.41406 0.85698 0.78523 0.79560 0.78374 1.21066 1.20389 1.19176 1.21501 1.02713 0.88604 0.84057 1.21641 0.89600 1.02481 1.04507 1.18149 0.90471 0.80141 0.92757 1.91616 1.77735 1.47707 1.92018 0.85050 0.91341 0.90936 0.82931 0.93305 0.89058 0.90334 0.95080 0.91441 0.93483 0.92705 0.79299 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.22 9.82 -56.51 -0.55 -10.77 16 3 C 0.51 15.49 7.89 70.28 0.55 16.05 16 4 O -0.52 -17.15 15.13 19.87 0.30 -16.85 16 5 C -0.20 -5.67 5.88 -20.06 -0.12 -5.78 16 6 C 0.06 1.83 9.08 22.53 0.20 2.03 16 7 C -0.70 -19.29 5.97 22.23 0.13 -19.16 16 8 S 2.70 94.15 5.64 -56.49 -0.32 93.83 16 9 O -0.97 -33.37 16.34 -128.00 -2.09 -35.46 16 10 O -0.99 -42.89 15.83 -128.00 -2.03 -44.91 16 11 N -0.99 -36.66 3.06 -520.46 -1.59 -38.26 16 12 C 0.10 2.82 9.53 127.77 1.22 4.04 16 13 C 0.27 12.47 2.62 44.24 0.12 12.59 16 14 H 0.03 1.66 6.91 -2.38 -0.02 1.65 16 15 C -0.14 -5.94 8.95 71.98 0.64 -5.29 16 16 C -0.54 -27.54 8.37 25.60 0.21 -27.33 16 17 H 0.06 3.07 7.65 -2.91 -0.02 3.04 16 18 C 0.02 1.02 5.30 84.66 0.45 1.47 16 19 N -0.91 -49.76 11.32 21.45 0.24 -49.52 16 20 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C 0.05 0.97 9.51 22.32 0.21 1.18 16 25 C -0.16 -2.76 10.01 22.28 0.22 -2.54 16 26 C 0.21 4.89 7.29 22.69 0.17 5.05 16 27 F -0.11 -2.89 15.55 44.97 0.70 -2.19 16 28 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.15 4.88 7.15 -2.91 -0.02 4.86 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.93 7.79 -2.38 -0.02 1.91 16 34 H 0.08 2.26 6.43 -2.39 -0.02 2.25 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 37 H 0.05 1.85 6.66 -2.39 -0.02 1.84 16 38 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.19 2.47 7.60 -2.91 -0.02 2.45 16 40 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -69.82 357.85 2.98 -66.84 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.08 Total: 9.32 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.21 Total: -15.92 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.35 Total: -87.77 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -4.37 Total: -108.00 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.70 Total: -2.19 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 94.15 SS G_CDS: -0.32 Total: 93.83 kcal Total: -69.82 2.98 -66.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175269238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.819 kcal (2) G-P(sol) polarization free energy of solvation -69.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds