Wall clock time and date at job start Wed Apr 1 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47287 * 300.00580 * 3 2 1 6 6 H 1.48500 * 109.47232 * 60.00250 * 3 2 1 7 7 C 1.38628 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99779 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.35792 * 117.00161 * 174.94375 * 9 7 2 11 11 C 1.38729 * 120.08637 * 5.60367 * 10 9 7 12 12 C 1.38351 * 119.98152 * 180.29465 * 11 10 9 13 13 F 1.35096 * 119.92228 * 179.72136 * 12 11 10 14 14 C 1.38532 * 120.15813 * 359.70153 * 12 11 10 15 15 C 1.38211 * 120.17609 * 359.97438 * 14 12 11 16 16 C 1.38719 * 120.01726 * 0.04376 * 15 14 12 17 17 N 1.39923 * 120.07791 * 179.97438 * 16 15 14 18 18 S 1.65600 * 120.00380 * 35.47741 * 17 16 15 19 19 O 1.42100 * 104.27912 * 176.08398 * 18 17 16 20 20 O 1.42097 * 104.27825 * 303.94675 * 18 17 16 21 21 C 1.81406 * 104.44738 * 60.01447 * 18 17 16 22 22 C 1.53006 * 109.46907 * 180.02562 * 21 18 17 23 23 H 1.09001 * 110.32861 * 307.25083 * 22 21 18 24 24 C 1.54475 * 110.36809 * 185.00318 * 22 21 18 25 25 C 1.54513 * 104.06165 * 217.18964 * 24 22 21 26 26 C 1.54480 * 104.06135 * 359.97438 * 25 24 22 27 27 O 1.44419 * 110.37206 * 69.62134 * 22 21 18 28 28 H 0.97006 * 120.00274 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01121 * 359.97438 * 11 10 9 30 30 H 1.08005 * 119.91115 * 180.02562 * 14 12 11 31 31 H 1.07998 * 119.99108 * 180.02562 * 15 14 12 32 32 H 0.97003 * 119.99949 * 215.75455 * 17 16 15 33 33 H 1.08991 * 109.47026 * 299.99961 * 21 18 17 34 34 H 1.08998 * 109.46697 * 60.00259 * 21 18 17 35 35 H 1.08999 * 110.51275 * 335.83334 * 24 22 21 36 36 H 1.09002 * 110.51325 * 98.40666 * 24 22 21 37 37 H 1.08999 * 110.51463 * 118.64266 * 25 24 22 38 38 H 1.08998 * 110.50869 * 241.22385 * 25 24 22 39 39 H 1.08996 * 110.37645 * 142.81067 * 26 25 24 40 40 H 1.08997 * 110.37376 * 265.15200 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3966 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 -0.1077 11 6 3.4561 -3.4400 -0.0939 12 6 4.2033 -4.5986 -0.2094 13 9 5.5527 -4.5339 -0.2014 14 6 3.5711 -5.8251 -0.3327 15 6 2.1909 -5.8976 -0.3405 16 6 1.4345 -4.7404 -0.2255 17 7 0.0372 -4.8122 -0.2338 18 16 -0.7301 -6.0980 0.4737 19 8 -2.1122 -5.7890 0.3567 20 8 -0.1764 -7.2356 -0.1731 21 6 -0.2089 -6.0365 2.2101 22 6 -0.8589 -7.1887 2.9788 23 1 -1.9380 -7.1854 2.8251 24 6 -0.5298 -7.0839 4.4845 25 6 -0.3430 -8.5512 4.9310 26 6 -0.5820 -9.3690 3.6424 27 8 -0.2936 -8.4515 2.5646 28 1 -0.4851 0.8401 0.0004 29 1 3.9515 -2.4851 0.0018 30 1 4.1583 -6.7271 -0.4222 31 1 1.7011 -6.8553 -0.4364 32 1 -0.4820 -4.1109 -0.6575 33 1 0.8757 -6.1281 2.2673 34 1 -0.5170 -5.0873 2.6485 35 1 0.3898 -6.5186 4.6360 36 1 -1.3553 -6.6202 5.0245 37 1 0.6689 -8.7114 5.3032 38 1 -1.0757 -8.8145 5.6938 39 1 0.0941 -10.2231 3.6041 40 1 -1.6186 -9.7019 3.5910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177877027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:33 Heat of formation + Delta-G solvation = -159.349232 kcal Electronic energy + Delta-G solvation = -28671.441342 eV Core-core repulsion = 24301.020845 eV Total energy + Delta-G solvation = -4370.420497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.34665 -39.66042 -39.43834 -37.13357 -36.53178 -35.74751 -34.21212 -32.62285 -32.48452 -31.93568 -29.51610 -27.91459 -26.55945 -25.59161 -22.59214 -22.30218 -21.72056 -21.33482 -19.17754 -18.44513 -17.99842 -17.52497 -16.96884 -16.79981 -16.21637 -15.89937 -15.46570 -15.35058 -15.25894 -15.05476 -14.94890 -14.34070 -13.96778 -13.82048 -13.69040 -13.44700 -12.91151 -12.82037 -12.71539 -12.58093 -12.25491 -12.00244 -11.94487 -11.91483 -11.78892 -11.56359 -11.48047 -11.31025 -11.10324 -10.92726 -10.64573 -10.60013 -10.48285 -10.09007 -10.00882 -9.74928 -9.04621 -8.06656 -7.29578 -6.66563 -4.25246 0.38049 1.75742 1.99031 2.87352 3.01526 3.04314 3.09664 3.47446 3.78318 3.83248 4.14162 4.22336 4.39706 4.48247 4.61364 4.74882 4.76804 4.84038 4.89140 5.01481 5.04439 5.13749 5.34676 5.42195 5.47189 5.53778 5.58528 5.61342 5.70956 5.73995 5.82079 5.95362 6.45653 6.49902 6.55764 6.75334 6.80856 6.85558 7.14132 7.33183 7.57756 7.77008 8.78330 9.39111 10.49808 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.003777 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.214139 B = 7410.586346 C = 8363.901739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.396 4.396 8 H 0.096 0.904 9 O -0.161 6.161 10 C 0.161 3.839 11 C -0.256 4.256 12 C 0.132 3.868 13 F -0.150 7.150 14 C -0.220 4.220 15 C -0.100 4.100 16 C 0.062 3.938 17 N -1.036 6.036 18 S 2.612 3.388 19 O -0.960 6.960 20 O -0.940 6.940 21 C -0.628 4.628 22 C 0.084 3.916 23 H 0.084 0.916 24 C -0.143 4.143 25 C -0.156 4.156 26 C 0.042 3.958 27 O -0.363 6.363 28 H 0.273 0.727 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.430 0.570 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -12.357 8.192 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.114 0.886 9 O -0.063 6.063 10 C 0.103 3.897 11 C -0.277 4.277 12 C 0.111 3.889 13 F -0.129 7.129 14 C -0.240 4.240 15 C -0.122 4.122 16 C -0.035 4.035 17 N -0.787 5.787 18 S 2.705 3.295 19 O -0.951 6.951 20 O -0.930 6.930 21 C -0.757 4.757 22 C 0.024 3.976 23 H 0.102 0.898 24 C -0.182 4.182 25 C -0.194 4.194 26 C -0.034 4.034 27 O -0.282 6.282 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.145 0.855 31 H 0.181 0.819 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.019 -12.895 7.655 15.030 hybrid contribution 0.894 1.729 0.572 2.029 sum -0.125 -11.166 8.227 13.870 Atomic orbital electron populations 1.70031 1.05964 1.28133 1.44554 1.25325 0.95914 0.98963 0.96024 0.85605 0.79249 0.79951 0.78438 1.18915 1.19940 1.19991 1.21442 0.92072 0.80399 1.53249 0.88629 1.83950 1.33967 1.11258 1.77088 1.18887 0.89362 0.87501 0.93978 1.20939 0.93566 0.98550 1.14693 1.17497 0.76019 0.94338 1.01001 1.91422 1.30056 1.97363 1.94019 1.20446 0.94329 0.96016 1.13212 1.21400 0.93554 0.98108 0.99124 1.16603 0.81641 0.92096 1.13137 1.52899 1.12286 1.44050 1.69485 1.05156 0.73610 0.73652 0.77033 1.93588 1.31442 1.83890 1.86136 1.93525 1.78694 1.49775 1.71026 1.30644 1.13459 1.05870 1.25678 1.22574 0.96988 0.83489 0.94521 0.89809 1.22954 1.03610 0.97433 0.94192 1.22966 1.03202 0.94795 0.98449 1.23468 1.01170 0.93425 0.85383 1.89285 1.78490 1.19238 1.41202 0.91668 0.83841 0.85491 0.81890 0.73195 0.83571 0.83227 0.89739 0.89862 0.90329 0.90311 0.88541 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.05 13.67 55.48 0.76 -22.29 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.24 29.55 -169.99 -5.02 14.22 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.40 -10.12 9.49 30.88 0.29 -9.83 16 8 H 0.10 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.16 -4.06 9.33 0.00 0.00 -4.06 16 10 C 0.16 3.52 6.67 -38.93 -0.26 3.26 16 11 C -0.26 -5.27 9.14 -39.36 -0.36 -5.63 16 12 C 0.13 2.45 7.29 -39.43 -0.29 2.17 16 13 F -0.15 -2.69 17.26 2.25 0.04 -2.65 16 14 C -0.22 -3.77 10.02 -39.48 -0.40 -4.16 16 15 C -0.10 -1.78 9.25 -39.41 -0.36 -2.14 16 16 C 0.06 1.20 6.15 -83.52 -0.51 0.69 16 17 N -1.04 -18.72 5.55 32.54 0.18 -18.54 16 18 S 2.61 42.57 5.15 -107.50 -0.55 42.02 16 19 O -0.96 -17.78 18.08 -57.54 -1.04 -18.82 16 20 O -0.94 -16.88 14.86 -57.62 -0.86 -17.74 16 21 C -0.63 -8.23 5.51 37.16 0.20 -8.02 16 22 C 0.08 0.99 3.24 -25.95 -0.08 0.91 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 C -0.14 -1.32 6.63 -25.16 -0.17 -1.49 16 25 C -0.16 -1.21 7.09 -25.16 -0.18 -1.39 16 26 C 0.04 0.38 7.63 37.93 0.29 0.67 16 27 O -0.36 -4.77 11.06 -35.23 -0.39 -5.16 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 30 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.16 2.78 5.18 -52.49 -0.27 2.51 16 32 H 0.43 7.98 8.68 -34.47 -0.30 7.69 16 33 H 0.15 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.15 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.08 0.78 7.87 -51.93 -0.41 0.38 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -31.59 353.51 -7.97 -39.56 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.49 Total: 12.09 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -1.92 Total: -23.94 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.94 Total: -40.83 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.29 Total: -45.78 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 42.57 SS G_CDS: -0.55 Total: 42.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.59 -7.97 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177877027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.792 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds