Wall clock time and date at job start Wed Apr 1 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47287 * 300.00580 * 3 2 1 6 6 H 1.48500 * 109.47232 * 60.00250 * 3 2 1 7 7 C 1.38628 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99779 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.35792 * 117.00161 * 174.94375 * 9 7 2 11 11 C 1.38729 * 120.08637 * 5.60367 * 10 9 7 12 12 C 1.38351 * 119.98152 * 180.29465 * 11 10 9 13 13 F 1.35096 * 119.92228 * 179.72136 * 12 11 10 14 14 C 1.38532 * 120.15813 * 359.70153 * 12 11 10 15 15 C 1.38211 * 120.17609 * 359.97438 * 14 12 11 16 16 C 1.38719 * 120.01726 * 0.04376 * 15 14 12 17 17 N 1.39923 * 120.07791 * 179.97438 * 16 15 14 18 18 S 1.65600 * 120.00380 * 35.47741 * 17 16 15 19 19 O 1.42100 * 104.27912 * 176.08398 * 18 17 16 20 20 O 1.42097 * 104.27825 * 303.94675 * 18 17 16 21 21 C 1.81406 * 104.44738 * 60.01447 * 18 17 16 22 22 C 1.53006 * 109.46907 * 180.02562 * 21 18 17 23 23 H 1.09001 * 110.32861 * 307.25083 * 22 21 18 24 24 C 1.54475 * 110.36809 * 185.00318 * 22 21 18 25 25 C 1.54513 * 104.06165 * 217.18964 * 24 22 21 26 26 C 1.54480 * 104.06135 * 359.97438 * 25 24 22 27 27 O 1.44419 * 110.37206 * 69.62134 * 22 21 18 28 28 H 0.97006 * 120.00274 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01121 * 359.97438 * 11 10 9 30 30 H 1.08005 * 119.91115 * 180.02562 * 14 12 11 31 31 H 1.07998 * 119.99108 * 180.02562 * 15 14 12 32 32 H 0.97003 * 119.99949 * 215.75455 * 17 16 15 33 33 H 1.08991 * 109.47026 * 299.99961 * 21 18 17 34 34 H 1.08998 * 109.46697 * 60.00259 * 21 18 17 35 35 H 1.08999 * 110.51275 * 335.83334 * 24 22 21 36 36 H 1.09002 * 110.51325 * 98.40666 * 24 22 21 37 37 H 1.08999 * 110.51463 * 118.64266 * 25 24 22 38 38 H 1.08998 * 110.50869 * 241.22385 * 25 24 22 39 39 H 1.08996 * 110.37645 * 142.81067 * 26 25 24 40 40 H 1.08997 * 110.37376 * 265.15200 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3966 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 -0.1077 11 6 3.4561 -3.4400 -0.0939 12 6 4.2033 -4.5986 -0.2094 13 9 5.5527 -4.5339 -0.2014 14 6 3.5711 -5.8251 -0.3327 15 6 2.1909 -5.8976 -0.3405 16 6 1.4345 -4.7404 -0.2255 17 7 0.0372 -4.8122 -0.2338 18 16 -0.7301 -6.0980 0.4737 19 8 -2.1122 -5.7890 0.3567 20 8 -0.1764 -7.2356 -0.1731 21 6 -0.2089 -6.0365 2.2101 22 6 -0.8589 -7.1887 2.9788 23 1 -1.9380 -7.1854 2.8251 24 6 -0.5298 -7.0839 4.4845 25 6 -0.3430 -8.5512 4.9310 26 6 -0.5820 -9.3690 3.6424 27 8 -0.2936 -8.4515 2.5646 28 1 -0.4851 0.8401 0.0004 29 1 3.9515 -2.4851 0.0018 30 1 4.1583 -6.7271 -0.4222 31 1 1.7011 -6.8553 -0.4364 32 1 -0.4820 -4.1109 -0.6575 33 1 0.8757 -6.1281 2.2673 34 1 -0.5170 -5.0873 2.6485 35 1 0.3898 -6.5186 4.6360 36 1 -1.3553 -6.6202 5.0245 37 1 0.6689 -8.7114 5.3032 38 1 -1.0757 -8.8145 5.6938 39 1 0.0941 -10.2231 3.6041 40 1 -1.6186 -9.7019 3.5910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177877027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:32 Heat of formation + Delta-G solvation = -181.856235 kcal Electronic energy + Delta-G solvation = -28672.417319 eV Core-core repulsion = 24301.020845 eV Total energy + Delta-G solvation = -4371.396473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82938 -41.07079 -40.46934 -38.67040 -38.06161 -37.15279 -35.70375 -34.32243 -33.51901 -32.72087 -31.10529 -29.48580 -27.44399 -27.36695 -24.02674 -23.27031 -23.24277 -22.11225 -20.54761 -20.16870 -19.58284 -18.85522 -18.36985 -18.00419 -17.23462 -17.08180 -16.82268 -16.71995 -16.58163 -16.39703 -16.20718 -15.95829 -15.51285 -15.30698 -15.00020 -14.67612 -14.26265 -14.18231 -13.93425 -13.67473 -13.57874 -13.42533 -13.31873 -13.16011 -13.04899 -12.83063 -12.68762 -12.66295 -12.17597 -12.16058 -12.10061 -11.83111 -11.55532 -11.53388 -11.34648 -10.88432 -10.85286 -9.65224 -8.88968 -8.51375 -6.18302 -0.92456 0.19283 0.43107 1.37600 1.43348 1.50631 1.54277 2.13612 2.49834 2.57296 2.68277 3.01265 3.13032 3.19149 3.36326 3.43076 3.67842 3.78723 3.86979 3.97731 4.04690 4.10805 4.21467 4.26521 4.35658 4.38584 4.54905 4.73996 4.84822 4.92099 4.96726 5.02938 5.08403 5.11860 5.15578 5.20952 5.27467 5.46003 5.73047 5.80631 5.92566 6.04562 6.93166 7.62752 8.69193 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.003777 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.214139 B = 7410.586346 C = 8363.901739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.010 4.010 3 Si 1.012 2.988 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.199 6.199 10 C 0.136 3.864 11 C -0.259 4.259 12 C 0.127 3.873 13 F -0.143 7.143 14 C -0.191 4.191 15 C -0.100 4.100 16 C 0.070 3.930 17 N -1.044 6.044 18 S 2.616 3.384 19 O -0.986 6.986 20 O -0.959 6.959 21 C -0.610 4.610 22 C 0.072 3.928 23 H 0.091 0.909 24 C -0.143 4.143 25 C -0.150 4.150 26 C 0.030 3.970 27 O -0.393 6.393 28 H 0.275 0.725 29 H 0.138 0.862 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.425 0.575 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -13.944 9.609 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.104 6.104 10 C 0.081 3.919 11 C -0.280 4.280 12 C 0.107 3.893 13 F -0.122 7.122 14 C -0.211 4.211 15 C -0.121 4.121 16 C -0.027 4.027 17 N -0.793 5.793 18 S 2.713 3.287 19 O -0.977 6.977 20 O -0.949 6.949 21 C -0.742 4.742 22 C 0.013 3.987 23 H 0.108 0.892 24 C -0.182 4.182 25 C -0.188 4.188 26 C -0.046 4.046 27 O -0.313 6.313 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.261 0.739 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.431 -14.532 9.031 17.115 hybrid contribution 0.526 1.871 0.154 1.950 sum 0.957 -12.661 9.185 15.671 Atomic orbital electron populations 1.70149 1.07684 1.28985 1.47432 1.26413 0.96754 1.02278 0.95539 0.84606 0.78343 0.75329 0.78503 1.17716 1.19656 1.19341 1.21839 0.92638 0.81101 1.53586 0.87935 1.83940 1.34805 1.11861 1.79792 1.19250 0.90065 0.87580 0.95034 1.21010 0.93350 0.99266 1.14416 1.17477 0.76296 0.94180 1.01344 1.91443 1.29413 1.97332 1.93964 1.20866 0.94173 0.96701 1.09311 1.21600 0.93868 0.97840 0.98809 1.16810 0.82321 0.91817 1.11787 1.53037 1.11915 1.43941 1.70424 1.04909 0.72863 0.72617 0.78270 1.93553 1.32921 1.84052 1.87159 1.93484 1.78663 1.50076 1.72697 1.30498 1.13998 1.07775 1.21905 1.22799 0.97172 0.82720 0.96032 0.89160 1.23009 1.04271 0.98768 0.92160 1.22976 1.04345 0.93256 0.98205 1.23765 1.02317 0.93400 0.85077 1.89248 1.78880 1.20085 1.43127 0.91610 0.84482 0.81826 0.80710 0.73899 0.82805 0.81713 0.89847 0.88111 0.89728 0.88098 0.87349 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 13.67 21.61 0.30 -50.70 16 2 C -0.01 -0.52 5.49 84.82 0.47 -0.06 16 3 Si 1.01 40.07 29.55 68.60 2.03 42.09 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.42 -21.97 9.49 67.91 0.64 -21.32 16 8 H 0.10 5.02 5.21 -2.91 -0.02 5.01 16 9 O -0.20 -10.48 9.33 -22.92 -0.21 -10.69 16 10 C 0.14 6.04 6.67 22.69 0.15 6.19 16 11 C -0.26 -10.59 9.14 22.41 0.20 -10.38 16 12 C 0.13 4.48 7.29 22.37 0.16 4.64 16 13 F -0.14 -4.77 17.26 44.97 0.78 -3.99 16 14 C -0.19 -5.93 10.02 22.33 0.22 -5.70 16 15 C -0.10 -3.34 9.25 22.38 0.21 -3.14 16 16 C 0.07 2.68 6.15 38.27 0.24 2.92 16 17 N -1.04 -38.46 5.55 -50.98 -0.28 -38.74 16 18 S 2.62 85.00 5.15 -56.49 -0.29 84.71 16 19 O -0.99 -37.10 18.08 -127.65 -2.31 -39.41 16 20 O -0.96 -33.88 14.86 -127.58 -1.90 -35.78 16 21 C -0.61 -15.22 5.51 71.98 0.40 -14.82 16 22 C 0.07 1.59 3.24 31.10 0.10 1.69 16 23 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 24 C -0.14 -2.26 6.63 31.61 0.21 -2.05 16 25 C -0.15 -1.85 7.09 31.61 0.22 -1.63 16 26 C 0.03 0.48 7.63 72.49 0.55 1.03 16 27 O -0.39 -9.65 11.06 -148.98 -1.65 -11.30 16 28 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 29 H 0.14 5.70 5.64 -2.91 -0.02 5.69 16 30 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.18 5.58 5.18 -2.91 -0.02 5.56 16 32 H 0.42 16.60 8.68 -96.74 -0.84 15.76 16 33 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.16 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.08 1.33 7.87 -2.39 -0.02 1.31 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.86 353.51 0.51 -69.36 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.27 Total: 37.09 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.78 Total: -42.64 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: 0.01 Total: -89.44 kcal Atomic # 8 Polarization: -91.11 SS G_CDS: -6.07 Total: -97.18 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.78 Total: -3.99 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 85.00 SS G_CDS: -0.29 Total: 84.71 kcal Total: -69.86 0.51 -69.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177877027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.499 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds