Wall clock time and date at job start Wed Apr 1 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38260 * 119.93784 * 269.72465 * 13 10 9 15 15 C 1.38183 * 120.09426 * 179.76905 * 14 13 10 16 16 C 1.38659 * 119.96864 * 0.50399 * 15 14 13 17 17 O 1.35960 * 120.06262 * 179.72842 * 16 15 14 18 18 C 1.42898 * 116.99863 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.46786 * 180.02562 * 18 17 16 20 20 H 1.09000 * 110.43863 * 303.90544 * 19 18 17 21 21 C 1.54818 * 110.48725 * 181.22260 * 19 18 17 22 22 C 1.54994 * 102.09186 * 220.44496 * 21 19 18 23 23 O 1.44378 * 103.49342 * 37.02089 * 22 21 19 24 24 C 1.43745 * 106.97725 * 319.94200 * 23 22 21 25 25 C 1.38914 * 119.87551 * 359.75127 * 16 15 14 26 26 F 1.35098 * 120.04540 * 179.97438 * 25 16 15 27 27 C 1.38255 * 119.93558 * 89.99855 * 13 10 9 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.07998 * 119.95119 * 0.02562 * 14 13 10 31 31 H 1.07996 * 120.01831 * 180.25606 * 15 14 13 32 32 H 1.08997 * 109.47251 * 300.00265 * 18 17 16 33 33 H 1.09002 * 109.47107 * 60.00689 * 18 17 16 34 34 H 1.09001 * 110.90238 * 338.64463 * 21 19 18 35 35 H 1.09000 * 110.90485 * 102.24172 * 21 19 18 36 36 H 1.09005 * 110.61743 * 278.52023 * 22 21 19 37 37 H 1.09001 * 110.62069 * 155.52376 * 22 21 19 38 38 H 1.09000 * 109.87975 * 267.09251 * 24 23 22 39 39 H 1.09000 * 110.00726 * 146.00317 * 24 23 22 40 40 H 1.08002 * 119.98902 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3161 -3.4266 1.6024 15 6 5.0050 -3.5023 2.7979 16 6 4.4100 -4.0894 3.9042 17 8 5.0881 -4.1698 5.0799 18 6 6.4103 -3.6283 5.1045 19 6 7.0098 -3.8098 6.5004 20 1 6.3660 -3.3550 7.2532 21 6 8.4327 -3.2031 6.5622 22 6 9.1978 -4.2545 7.4056 23 8 8.6367 -5.5107 6.9676 24 6 7.2233 -5.3052 6.8054 25 6 3.1200 -4.5958 3.8089 26 9 2.5372 -5.1690 4.8845 27 6 2.4332 -4.5125 2.6110 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0068 30 1 4.7813 -2.9728 0.7398 31 1 6.0078 -3.1078 2.8695 32 1 7.0294 -4.1478 4.3732 33 1 6.3727 -2.5666 4.8602 34 1 8.8626 -3.1174 5.5642 35 1 8.4215 -2.2354 7.0637 36 1 9.0131 -4.1017 8.4690 37 1 10.2657 -4.2155 7.1910 38 1 6.7018 -5.5742 7.7240 39 1 6.8512 -5.9091 5.9777 40 1 1.4305 -4.9065 2.5353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185272394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:19 Heat of formation + Delta-G solvation = -177.403788 kcal Electronic energy + Delta-G solvation = -27850.466065 eV Core-core repulsion = 23479.262664 eV Total energy + Delta-G solvation = -4371.203401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -48.64021 -40.43336 -39.44146 -37.40388 -36.15683 -34.78081 -34.70115 -33.46831 -31.04352 -30.64980 -30.40038 -29.43756 -26.48910 -24.60703 -23.37459 -22.79691 -22.46894 -20.84915 -18.83044 -18.40793 -18.17979 -17.43623 -17.25681 -16.80877 -16.37513 -16.25474 -15.98555 -15.51476 -15.32517 -15.04541 -14.81845 -14.63451 -14.40818 -14.10605 -13.66187 -13.31973 -13.17008 -12.77578 -12.64148 -12.46638 -12.14117 -12.05404 -11.79177 -11.71156 -11.43532 -11.36243 -11.17372 -11.12208 -11.04659 -11.00704 -10.94257 -10.66448 -10.42205 -10.10466 -10.04421 -10.01265 -8.89829 -8.41633 -8.28493 -6.55816 -3.98321 0.99155 1.25506 1.50897 2.73650 3.12796 3.16881 3.18602 3.46494 3.53309 3.99523 4.01161 4.19810 4.32890 4.36803 4.41397 4.65467 4.71005 4.73405 4.76407 4.82917 4.88295 5.04505 5.07639 5.16825 5.26314 5.33116 5.37984 5.40481 5.47748 5.56437 5.61351 5.64607 5.72731 6.08822 6.16303 6.39251 6.45460 6.66161 6.92992 7.17726 7.39744 8.57251 8.70670 9.13491 10.59697 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.003025 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.348413 B = 9254.713929 C =10399.595980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.032 3.968 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.275 4.275 8 H 0.104 0.896 9 N -0.944 5.944 10 S 2.614 3.386 11 O -0.999 6.999 12 O -0.969 6.969 13 C -0.666 4.666 14 C 0.010 3.990 15 C -0.207 4.207 16 C 0.130 3.870 17 O -0.307 6.307 18 C 0.064 3.936 19 C -0.121 4.121 20 H 0.097 0.903 21 C -0.148 4.148 22 C 0.047 3.953 23 O -0.379 6.379 24 C 0.052 3.948 25 C 0.044 3.956 26 F -0.135 7.135 27 C -0.020 4.020 28 H 0.276 0.724 29 H 0.412 0.588 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -3.133 12.687 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.176 4.176 3 Si 0.749 3.251 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.416 4.416 8 H 0.122 0.878 9 N -0.696 5.696 10 S 2.704 3.296 11 O -0.988 6.988 12 O -0.959 6.959 13 C -0.745 4.745 14 C -0.009 4.009 15 C -0.226 4.226 16 C 0.084 3.916 17 O -0.221 6.221 18 C -0.011 4.011 19 C -0.140 4.140 20 H 0.115 0.885 21 C -0.185 4.185 22 C -0.030 4.030 23 O -0.298 6.298 24 C -0.025 4.025 25 C 0.023 3.977 26 F -0.114 7.114 27 C -0.040 4.040 28 H 0.086 0.914 29 H 0.248 0.752 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.053 -4.122 12.292 19.120 hybrid contribution 0.055 1.409 1.056 1.762 sum 14.109 -2.713 13.349 19.611 Atomic orbital electron populations 1.69680 1.06027 1.28606 1.47162 1.25268 0.95668 0.99549 0.97117 0.86043 0.79110 0.80737 0.79184 1.19418 1.20641 1.19779 1.19278 0.92180 0.82998 1.47137 0.87831 1.51801 1.17140 1.19201 1.81491 1.06507 0.73150 0.73661 0.76300 1.93425 1.59730 1.57774 1.87898 1.93475 1.61285 1.86932 1.54195 1.32063 1.07953 1.10087 1.24404 1.20812 0.91787 0.91271 0.97043 1.21222 1.01894 1.06452 0.93071 1.19053 0.90746 0.95980 0.85862 1.86088 1.28522 1.76841 1.30643 1.22929 0.81449 0.99145 0.97571 1.22584 0.97216 0.97368 0.96845 0.88491 1.23158 0.93480 0.99763 1.02146 1.23556 0.98787 0.82813 0.97844 1.88899 1.20528 1.32109 1.88244 1.23237 0.82250 0.94962 1.02020 1.17007 0.90612 1.04627 0.85435 1.91479 1.83857 1.82678 1.53364 1.20734 0.99890 0.94161 0.89230 0.91369 0.75247 0.83524 0.84368 0.91102 0.91020 0.89853 0.89424 0.91945 0.88664 0.91798 0.89186 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.38 13.06 55.49 0.72 -21.66 16 2 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 3 Si 0.92 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.28 -6.61 9.63 -15.06 -0.15 -6.76 16 8 H 0.10 2.31 7.82 -52.49 -0.41 1.90 16 9 N -0.94 -21.76 5.75 31.50 0.18 -21.58 16 10 S 2.61 55.37 5.70 -107.50 -0.61 54.76 16 11 O -1.00 -22.67 17.28 -57.17 -0.99 -23.66 16 12 O -0.97 -22.29 16.97 -57.17 -0.97 -23.26 16 13 C -0.67 -12.45 5.89 -39.57 -0.23 -12.68 16 14 C 0.01 0.17 9.51 -39.59 -0.38 -0.21 16 15 C -0.21 -2.98 9.04 -39.45 -0.36 -3.34 16 16 C 0.13 2.01 6.69 -39.18 -0.26 1.75 16 17 O -0.31 -4.14 9.75 -19.62 -0.19 -4.33 16 18 C 0.06 0.62 3.84 37.16 0.14 0.76 16 19 C -0.12 -0.98 3.34 -89.09 -0.30 -1.28 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 21 C -0.15 -0.90 6.71 -24.72 -0.17 -1.07 16 22 C 0.05 0.31 7.72 38.21 0.29 0.61 16 23 O -0.38 -3.87 11.52 -35.23 -0.41 -4.28 16 24 C 0.05 0.49 7.23 37.73 0.27 0.76 16 25 C 0.04 0.75 7.31 -39.30 -0.29 0.46 16 26 F -0.14 -2.31 17.11 2.25 0.04 -2.27 16 27 C -0.02 -0.36 9.49 -39.54 -0.38 -0.74 16 28 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.41 9.67 8.02 -34.47 -0.28 9.40 16 30 H 0.15 2.28 7.60 -52.49 -0.40 1.88 16 31 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 32 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.92 7.60 -51.93 -0.39 0.53 16 40 H 0.15 2.59 7.61 -52.49 -0.40 2.19 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -30.66 357.08 -8.42 -39.08 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.66 Total: 9.11 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.88 Total: -21.05 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.91 Total: -43.24 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -2.56 Total: -55.53 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.61 Total: 54.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.66 -8.42 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185272394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.325 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds