Wall clock time and date at job start Wed Apr 1 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38260 * 119.93784 * 269.72465 * 13 10 9 15 15 C 1.38183 * 120.09426 * 179.76905 * 14 13 10 16 16 C 1.38659 * 119.96864 * 0.50399 * 15 14 13 17 17 O 1.35960 * 120.06262 * 179.72842 * 16 15 14 18 18 C 1.42898 * 116.99863 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.46786 * 180.02562 * 18 17 16 20 20 H 1.09000 * 110.43863 * 303.90544 * 19 18 17 21 21 C 1.54818 * 110.48725 * 181.22260 * 19 18 17 22 22 C 1.54994 * 102.09186 * 220.44496 * 21 19 18 23 23 O 1.44378 * 103.49342 * 37.02089 * 22 21 19 24 24 C 1.43745 * 106.97725 * 319.94200 * 23 22 21 25 25 C 1.38914 * 119.87551 * 359.75127 * 16 15 14 26 26 F 1.35098 * 120.04540 * 179.97438 * 25 16 15 27 27 C 1.38255 * 119.93558 * 89.99855 * 13 10 9 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.07998 * 119.95119 * 0.02562 * 14 13 10 31 31 H 1.07996 * 120.01831 * 180.25606 * 15 14 13 32 32 H 1.08997 * 109.47251 * 300.00265 * 18 17 16 33 33 H 1.09002 * 109.47107 * 60.00689 * 18 17 16 34 34 H 1.09001 * 110.90238 * 338.64463 * 21 19 18 35 35 H 1.09000 * 110.90485 * 102.24172 * 21 19 18 36 36 H 1.09005 * 110.61743 * 278.52023 * 22 21 19 37 37 H 1.09001 * 110.62069 * 155.52376 * 22 21 19 38 38 H 1.09000 * 109.87975 * 267.09251 * 24 23 22 39 39 H 1.09000 * 110.00726 * 146.00317 * 24 23 22 40 40 H 1.08002 * 119.98902 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 16 2.1534 -3.8222 -0.0144 11 8 1.1738 -4.8512 0.0150 12 8 3.1357 -3.7130 -1.0354 13 6 3.0303 -3.9263 1.5104 14 6 4.3161 -3.4266 1.6024 15 6 5.0050 -3.5023 2.7979 16 6 4.4100 -4.0894 3.9042 17 8 5.0881 -4.1698 5.0799 18 6 6.4103 -3.6283 5.1045 19 6 7.0098 -3.8098 6.5004 20 1 6.3660 -3.3550 7.2532 21 6 8.4327 -3.2031 6.5622 22 6 9.1978 -4.2545 7.4056 23 8 8.6367 -5.5107 6.9676 24 6 7.2233 -5.3052 6.8054 25 6 3.1200 -4.5958 3.8089 26 9 2.5372 -5.1690 4.8845 27 6 2.4332 -4.5125 2.6110 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0068 30 1 4.7813 -2.9728 0.7398 31 1 6.0078 -3.1078 2.8695 32 1 7.0294 -4.1478 4.3732 33 1 6.3727 -2.5666 4.8602 34 1 8.8626 -3.1174 5.5642 35 1 8.4215 -2.2354 7.0637 36 1 9.0131 -4.1017 8.4690 37 1 10.2657 -4.2155 7.1910 38 1 6.7018 -5.5742 7.7240 39 1 6.8512 -5.9091 5.9777 40 1 1.4305 -4.9065 2.5353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185272394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:18 Heat of formation + Delta-G solvation = -199.309029 kcal Electronic energy + Delta-G solvation = -27851.415947 eV Core-core repulsion = 23479.262664 eV Total energy + Delta-G solvation = -4372.153283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.97584 -41.42588 -40.26610 -38.60062 -38.04818 -36.68045 -36.42465 -34.18398 -32.79676 -31.96475 -31.40626 -30.30603 -27.32700 -26.38954 -24.35868 -24.10460 -23.28822 -21.56018 -20.42492 -20.01961 -19.60321 -18.86634 -18.19372 -18.09597 -17.83662 -17.09854 -17.05397 -16.88000 -16.43813 -16.12036 -16.08672 -16.05729 -15.86387 -15.35404 -15.14209 -14.38033 -14.01520 -13.99463 -13.80008 -13.72559 -13.49869 -13.08673 -13.00523 -12.96936 -12.82064 -12.80603 -12.74483 -12.51218 -12.31965 -12.23774 -12.08424 -11.83873 -11.82394 -11.68737 -11.64170 -10.68971 -10.20547 -10.13751 -9.63011 -8.27684 -5.84504 -0.43096 -0.17225 -0.06067 1.51469 1.55779 1.61499 1.73660 2.09012 2.36503 2.70243 2.95037 2.96605 2.99418 3.25893 3.35508 3.44955 3.61387 3.72200 3.76311 3.91069 4.07566 4.14153 4.15300 4.25287 4.31389 4.34809 4.44300 4.53739 4.74893 4.79008 4.80434 4.83753 4.87369 4.96411 4.97658 5.10513 5.14067 5.39000 5.65124 5.85763 6.04352 6.77499 7.00983 7.35740 8.90550 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.003025 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.348413 B = 9254.713929 C =10399.595980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.019 4.019 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.310 4.310 8 H 0.115 0.885 9 N -0.974 5.974 10 S 2.677 3.323 11 O -1.011 7.011 12 O -0.987 6.987 13 C -0.683 4.683 14 C 0.008 3.992 15 C -0.194 4.194 16 C 0.147 3.853 17 O -0.313 6.313 18 C 0.053 3.947 19 C -0.118 4.118 20 H 0.100 0.900 21 C -0.140 4.140 22 C 0.039 3.961 23 O -0.404 6.404 24 C 0.049 3.951 25 C 0.028 3.972 26 F -0.138 7.138 27 C -0.028 4.028 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.233 -3.015 14.233 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.445 4.445 8 H 0.132 0.868 9 N -0.727 5.727 10 S 2.768 3.232 11 O -1.001 7.001 12 O -0.977 6.977 13 C -0.769 4.769 14 C -0.011 4.011 15 C -0.213 4.213 16 C 0.099 3.901 17 O -0.226 6.226 18 C -0.021 4.021 19 C -0.137 4.137 20 H 0.119 0.881 21 C -0.177 4.177 22 C -0.037 4.037 23 O -0.324 6.324 24 C -0.028 4.028 25 C 0.007 3.993 26 F -0.116 7.116 27 C -0.048 4.048 28 H 0.080 0.920 29 H 0.241 0.759 30 H 0.178 0.822 31 H 0.199 0.801 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 17.373 -3.898 13.796 22.525 hybrid contribution -0.710 0.949 0.776 1.416 sum 16.663 -2.949 14.572 22.332 Atomic orbital electron populations 1.69796 1.07348 1.28637 1.51474 1.26012 0.96345 1.02402 0.97323 0.85163 0.77849 0.76985 0.79546 1.19030 1.21283 1.18438 1.19505 0.92634 0.83387 1.48945 0.86784 1.51352 1.16736 1.19181 1.85390 1.02802 0.72620 0.72174 0.75570 1.93437 1.60706 1.57623 1.88323 1.93471 1.61904 1.87014 1.55321 1.31172 1.09339 1.14085 1.22306 1.21083 0.90922 0.90438 0.98662 1.21566 1.03323 1.05089 0.91343 1.19155 0.90081 0.94068 0.86814 1.86120 1.30303 1.76665 1.29558 1.23333 0.79555 1.00279 0.98951 1.22596 0.98448 0.96550 0.96074 0.88132 1.23170 0.91619 1.00214 1.02700 1.23797 0.99600 0.81743 0.98559 1.88873 1.20836 1.34145 1.88557 1.23235 0.82190 0.95859 1.01532 1.17075 0.91607 1.05496 0.85104 1.91471 1.84071 1.82811 1.53294 1.20761 1.00193 0.94249 0.89606 0.91996 0.75896 0.82215 0.80053 0.89853 0.89028 0.89132 0.87408 0.91070 0.87282 0.91864 0.90553 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.07 13.06 21.65 0.28 -49.78 16 2 C -0.02 -0.97 5.50 84.86 0.47 -0.50 16 3 Si 0.98 39.05 29.55 68.60 2.03 41.08 16 4 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.31 -15.16 9.63 84.04 0.81 -14.35 16 8 H 0.11 5.07 7.82 -2.91 -0.02 5.05 16 9 N -0.97 -45.94 5.75 -54.26 -0.31 -46.26 16 10 S 2.68 112.33 5.70 -56.49 -0.32 112.01 16 11 O -1.01 -45.60 17.28 -128.00 -2.21 -47.81 16 12 O -0.99 -44.45 16.97 -128.00 -2.17 -46.62 16 13 C -0.68 -24.52 5.89 22.28 0.13 -24.39 16 14 C 0.01 0.25 9.51 22.26 0.21 0.46 16 15 C -0.19 -4.77 9.04 22.36 0.20 -4.57 16 16 C 0.15 4.04 6.69 22.53 0.15 4.20 16 17 O -0.31 -7.37 9.75 -93.11 -0.91 -8.28 16 18 C 0.05 0.79 3.84 71.98 0.28 1.07 16 19 C -0.12 -1.51 3.34 -9.80 -0.03 -1.54 16 20 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 21 C -0.14 -1.15 6.71 31.90 0.21 -0.93 16 22 C 0.04 0.41 7.72 72.66 0.56 0.97 16 23 O -0.40 -7.48 11.52 -148.98 -1.72 -9.19 16 24 C 0.05 0.82 7.23 72.36 0.52 1.34 16 25 C 0.03 0.90 7.31 22.45 0.16 1.06 16 26 F -0.14 -4.53 17.11 44.97 0.77 -3.76 16 27 C -0.03 -0.97 9.49 22.30 0.21 -0.76 16 28 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 29 H 0.41 20.01 8.02 -96.74 -0.78 19.24 16 30 H 0.16 4.44 7.60 -2.91 -0.02 4.42 16 31 H 0.18 2.86 6.30 -2.91 -0.02 2.84 16 32 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 33 H 0.09 1.08 7.66 -2.39 -0.02 1.06 16 34 H 0.09 0.64 7.87 -2.39 -0.02 0.62 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.45 7.60 -2.39 -0.02 1.43 16 40 H 0.15 5.19 7.61 -2.91 -0.02 5.17 16 Total: -1.00 -67.34 357.08 -0.35 -67.69 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.32 Total: 28.87 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.89 Total: -37.95 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -0.03 Total: -96.04 kcal Atomic # 8 Polarization: -104.89 SS G_CDS: -7.01 Total: -111.90 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.77 Total: -3.76 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: 112.33 SS G_CDS: -0.32 Total: 112.01 kcal Total: -67.34 -0.35 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185272394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.619 kcal (2) G-P(sol) polarization free energy of solvation -67.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds