Wall clock time and date at job start Wed Apr 1 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38264 * 119.94073 * 269.73016 * 13 10 9 15 15 C 1.38177 * 120.09579 * 179.72526 * 14 13 10 16 16 C 1.38663 * 119.96885 * 0.54653 * 15 14 13 17 17 O 1.35957 * 120.06239 * 179.70693 * 16 15 14 18 18 C 1.42905 * 116.99756 * 0.02562 * 17 16 15 19 19 C 1.52996 * 109.46670 * 180.02562 * 18 17 16 20 20 H 1.08994 * 110.75724 * 57.02403 * 19 18 17 21 21 C 1.55307 * 110.84740 * 180.71856 * 19 18 17 22 22 C 1.54947 * 100.94567 * 152.32206 * 21 19 18 23 23 O 1.43646 * 105.13416 * 323.55704 * 22 21 19 24 24 C 1.43231 * 109.97274 * 24.42462 * 23 22 21 25 25 C 1.38902 * 119.87737 * 359.72684 * 16 15 14 26 26 F 1.35097 * 120.04937 * 180.02562 * 25 16 15 27 27 C 1.38255 * 119.93558 * 89.99855 * 13 10 9 28 28 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 30 30 H 1.07997 * 119.94868 * 359.97091 * 14 13 10 31 31 H 1.07998 * 120.01266 * 180.26926 * 15 14 13 32 32 H 1.08996 * 109.47608 * 300.00385 * 18 17 16 33 33 H 1.08998 * 109.46887 * 60.00684 * 18 17 16 34 34 H 1.09001 * 111.12611 * 270.24317 * 21 19 18 35 35 H 1.09004 * 111.12360 * 34.40478 * 21 19 18 36 36 H 1.08999 * 110.30781 * 204.63839 * 22 21 19 37 37 H 1.09000 * 110.38875 * 82.51497 * 22 21 19 38 38 H 1.09001 * 109.83264 * 238.77614 * 24 23 22 39 39 H 1.09004 * 109.90527 * 117.84130 * 24 23 22 40 40 H 1.08005 * 119.98845 * 0.02650 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 16 4.2075 -2.6363 0.0115 11 8 5.5885 -2.3025 -0.0182 12 8 3.6222 -3.4330 1.0322 13 6 3.8586 -3.4467 -1.5137 14 6 2.7828 -4.3103 -1.6060 15 6 2.5029 -4.9432 -2.8020 16 6 3.3085 -4.7208 -3.9084 17 8 3.0384 -5.3471 -5.0845 18 6 1.9079 -6.2209 -5.1094 19 6 1.7646 -6.8295 -6.5058 20 1 2.6753 -7.3547 -6.7936 21 6 0.5325 -7.7726 -6.5739 22 6 0.1652 -7.6689 -8.0756 23 8 0.4302 -6.3031 -8.4330 24 6 1.4044 -5.7449 -7.5437 25 6 4.3924 -3.8573 -3.8129 26 9 5.1793 -3.6378 -4.8888 27 6 4.6645 -3.2221 -2.6144 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3621 0.0055 30 1 2.1581 -4.4874 -0.7430 31 1 1.6597 -5.6141 -2.8737 32 1 2.0481 -7.0175 -4.3789 33 1 1.0077 -5.6574 -4.8642 34 1 0.8040 -8.7936 -6.3055 35 1 -0.2785 -7.4055 -5.9448 36 1 -0.8894 -7.9011 -8.2240 37 1 0.7869 -8.3420 -8.6660 38 1 0.9877 -4.8735 -7.0385 39 1 2.2953 -5.4574 -8.1023 40 1 5.5071 -2.5507 -2.5386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185272412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:24 Heat of formation + Delta-G solvation = -172.075384 kcal Electronic energy + Delta-G solvation = -27864.374103 eV Core-core repulsion = 23493.401759 eV Total energy + Delta-G solvation = -4370.972344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -48.68016 -40.42235 -39.45154 -37.45047 -36.31463 -34.93853 -34.80351 -33.50051 -31.58848 -30.69136 -30.43140 -29.49719 -26.49732 -24.29420 -23.23205 -22.86120 -22.47664 -20.96894 -19.10193 -18.56441 -18.38506 -17.59241 -17.28208 -16.85268 -16.43423 -16.15448 -16.06247 -15.56735 -15.20487 -15.00870 -14.95655 -14.71286 -14.31229 -14.06115 -13.64627 -13.40831 -13.16269 -12.89300 -12.73481 -12.65852 -12.45457 -12.10070 -11.80029 -11.71490 -11.52410 -11.45950 -11.24693 -11.21196 -11.10011 -11.04831 -11.01145 -10.52236 -10.48211 -10.17109 -10.10723 -9.85886 -8.93667 -8.56071 -8.36009 -6.49995 -3.99840 0.92263 1.22263 1.35273 2.69890 3.07426 3.10519 3.15010 3.41568 3.50475 3.95049 4.03267 4.08791 4.20640 4.32029 4.39499 4.58435 4.64749 4.70290 4.77030 4.81511 4.88028 5.00371 5.04372 5.12834 5.28313 5.30230 5.35007 5.44330 5.47830 5.49885 5.59151 5.66584 5.73108 6.04605 6.14418 6.31526 6.59737 6.64356 6.75833 7.14337 7.52815 8.17869 8.81835 8.96042 10.60320 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.002988 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.446979 B = 9369.525585 C =10194.113210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.050 3.950 3 Si 0.883 3.117 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.282 4.282 8 H 0.122 0.878 9 N -0.975 5.975 10 S 2.631 3.369 11 O -0.997 6.997 12 O -0.960 6.960 13 C -0.668 4.668 14 C 0.017 3.983 15 C -0.206 4.206 16 C 0.134 3.866 17 O -0.306 6.306 18 C 0.065 3.935 19 C -0.121 4.121 20 H 0.098 0.902 21 C -0.149 4.149 22 C 0.052 3.948 23 O -0.385 6.385 24 C 0.057 3.943 25 C 0.043 3.957 26 F -0.135 7.135 27 C -0.022 4.022 28 H 0.277 0.723 29 H 0.391 0.609 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -12.743 -11.747 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.421 4.421 8 H 0.140 0.860 9 N -0.727 5.727 10 S 2.721 3.279 11 O -0.986 6.986 12 O -0.950 6.950 13 C -0.748 4.748 14 C -0.002 4.002 15 C -0.225 4.225 16 C 0.087 3.913 17 O -0.220 6.220 18 C -0.010 4.010 19 C -0.140 4.140 20 H 0.116 0.884 21 C -0.186 4.186 22 C -0.024 4.024 23 O -0.304 6.304 24 C -0.019 4.019 25 C 0.022 3.978 26 F -0.114 7.114 27 C -0.042 4.042 28 H 0.087 0.913 29 H 0.226 0.774 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.659 -13.119 -11.551 17.558 hybrid contribution 0.205 0.989 -0.741 1.252 sum 1.864 -12.130 -12.291 17.369 Atomic orbital electron populations 1.69710 1.05749 1.28189 1.47175 1.25104 0.95403 0.98537 0.96814 0.86561 0.80211 0.83182 0.79188 1.19431 1.20044 1.18826 1.19034 0.78365 0.96966 1.47746 0.86041 1.52241 1.15633 1.21285 1.83552 1.05763 0.72773 0.73331 0.76032 1.93440 1.33441 1.83788 1.87946 1.93501 1.78377 1.69111 1.54009 1.31844 1.05097 1.13968 1.23928 1.20835 0.92683 0.89432 0.97233 1.21237 1.02149 1.06137 0.92965 1.19072 0.93818 0.92588 0.85848 1.86098 1.47672 1.57661 1.30543 1.22858 0.88064 0.92692 0.97362 1.22752 1.00152 0.96895 0.94182 0.88409 1.23283 0.97163 1.00362 0.97842 1.23359 1.01455 0.84069 0.93547 1.88425 1.61173 1.25793 1.55037 1.23197 0.92260 0.95838 0.90647 1.16972 0.92568 1.02832 0.85388 1.91481 1.72707 1.93847 1.53317 1.20716 0.98093 0.96068 0.89291 0.91289 0.77407 0.83287 0.84200 0.90953 0.90852 0.89236 0.89630 0.89419 0.91991 0.90697 0.90748 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.01 13.97 55.49 0.78 -22.23 16 2 C 0.05 1.25 5.50 -17.43 -0.10 1.15 16 3 Si 0.88 18.78 27.74 -169.99 -4.72 14.06 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.28 6.51 56.52 0.37 -4.92 16 7 C -0.28 -6.88 10.12 -15.06 -0.15 -7.04 16 8 H 0.12 3.06 8.05 -52.49 -0.42 2.63 16 9 N -0.98 -21.15 5.55 31.50 0.17 -20.97 16 10 S 2.63 53.39 5.70 -107.50 -0.61 52.78 16 11 O -1.00 -21.19 17.28 -57.17 -0.99 -22.18 16 12 O -0.96 -21.59 16.97 -57.17 -0.97 -22.56 16 13 C -0.67 -12.11 5.89 -39.57 -0.23 -12.35 16 14 C 0.02 0.29 9.51 -39.59 -0.38 -0.09 16 15 C -0.21 -2.94 9.04 -39.45 -0.36 -3.30 16 16 C 0.13 2.02 6.69 -39.18 -0.26 1.76 16 17 O -0.31 -4.06 9.85 -19.61 -0.19 -4.25 16 18 C 0.07 0.61 4.05 37.16 0.15 0.76 16 19 C -0.12 -0.98 3.29 -88.67 -0.29 -1.28 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.15 -0.92 6.62 -24.48 -0.16 -1.08 16 22 C 0.05 0.37 7.78 38.19 0.30 0.67 16 23 O -0.38 -4.15 11.36 -35.23 -0.40 -4.55 16 24 C 0.06 0.57 7.26 37.88 0.27 0.84 16 25 C 0.04 0.71 7.31 -39.30 -0.29 0.42 16 26 F -0.13 -2.23 17.11 2.25 0.04 -2.20 16 27 C -0.02 -0.37 9.49 -39.54 -0.38 -0.75 16 28 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 7.98 5.88 -34.47 -0.20 7.78 16 30 H 0.15 2.38 7.60 -52.49 -0.40 1.98 16 31 H 0.14 1.53 6.30 -52.49 -0.33 1.20 16 32 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.07 0.66 7.59 -51.93 -0.39 0.26 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.15 2.41 7.61 -52.48 -0.40 2.01 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -30.83 354.33 -8.07 -38.90 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.65 Total: 8.12 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.87 Total: -20.26 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.95 Total: -43.20 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.55 Total: -53.54 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.72 Total: 14.06 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.61 Total: 52.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.83 -8.07 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185272412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.179 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds