Wall clock time and date at job start Wed Apr 1 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47484 * 2 1 4 4 H 1.09001 * 109.47217 * 307.22036 * 3 2 1 5 5 C 1.50694 * 109.47398 * 187.21969 * 3 2 1 6 6 H 1.08006 * 120.00088 * 244.28962 * 5 3 2 7 7 C 1.37876 * 120.00127 * 64.28883 * 5 3 2 8 8 N 1.31520 * 119.99746 * 194.48041 * 7 5 3 9 9 Si 1.86794 * 120.00090 * 14.48338 * 7 5 3 10 10 H 1.48498 * 109.47131 * 91.35455 * 9 7 5 11 11 H 1.48496 * 109.47321 * 211.35319 * 9 7 5 12 12 H 1.48500 * 109.47218 * 331.35326 * 9 7 5 13 13 N 1.46505 * 109.46974 * 67.21657 * 3 2 1 14 14 S 1.65603 * 119.99944 * 244.35121 * 13 3 2 15 15 O 1.42104 * 106.40167 * 50.87869 * 14 13 3 16 16 O 1.42102 * 106.39889 * 183.79371 * 14 13 3 17 17 C 1.76197 * 107.21773 * 297.33801 * 14 13 3 18 18 C 1.37972 * 120.04957 * 117.77748 * 17 14 13 19 19 C 1.38312 * 120.17809 * 179.74453 * 18 17 14 20 20 C 1.38602 * 120.27674 * 0.54967 * 19 18 17 21 21 F 1.35095 * 119.94947 * 179.72433 * 20 19 18 22 22 C 1.38157 * 120.09769 * 359.70642 * 20 19 18 23 23 C 1.39607 * 120.05183 * 298.04927 * 17 14 13 24 24 C 1.47735 * 120.13547 * 0.02562 * 23 17 14 25 25 O 1.21473 * 120.00030 * 4.39958 * 24 23 17 26 26 O 1.34710 * 120.00316 * 184.40236 * 24 23 17 27 27 C 1.45196 * 117.00580 * 185.09044 * 26 24 23 28 28 H 1.09001 * 109.47471 * 174.63160 * 1 2 3 29 29 H 1.09002 * 109.47307 * 54.62805 * 1 2 3 30 30 H 1.09001 * 109.46973 * 294.63287 * 1 2 3 31 31 H 1.09001 * 109.47511 * 120.00340 * 2 1 3 32 32 H 1.09006 * 109.46774 * 240.00124 * 2 1 3 33 33 H 0.97006 * 119.99690 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99391 * 64.35228 * 13 3 2 35 35 H 1.07996 * 119.91086 * 0.02562 * 18 17 14 36 36 H 1.07996 * 119.86303 * 180.25702 * 19 18 17 37 37 H 1.08007 * 120.09099 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.47109 * 64.74182 * 27 26 24 39 39 H 1.08997 * 109.47151 * 184.74363 * 27 26 24 40 40 H 1.09003 * 109.46531 * 304.74619 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5751 1.9922 -0.8183 5 6 3.5363 1.4462 -0.1785 6 1 4.1734 1.8176 0.6105 7 6 4.0921 0.9754 -1.3492 8 7 5.3790 0.7099 -1.4059 9 14 3.0174 0.7148 -2.8546 10 1 3.0123 1.9499 -3.6790 11 1 3.5544 -0.4135 -3.6569 12 1 1.6311 0.4008 -2.4249 13 7 1.6985 2.0811 1.2735 14 16 0.6524 3.3646 1.3018 15 8 -0.4969 2.9618 0.5695 16 8 0.5983 3.8084 2.6507 17 6 1.3992 4.6666 0.3790 18 6 0.7879 5.1433 -0.7623 19 6 1.3691 6.1689 -1.4858 20 6 2.5745 6.7170 -1.0763 21 9 3.1391 7.7147 -1.7911 22 6 3.1992 6.2448 0.0619 23 6 2.6133 5.2136 0.7984 24 6 3.2757 4.7027 2.0161 25 8 2.8062 3.7525 2.6097 26 8 4.4004 5.2904 2.4681 27 6 5.0599 4.6676 3.6019 28 1 -0.3634 -1.0231 -0.0961 29 1 -0.3634 0.5949 -0.8380 30 1 -0.3633 0.4283 0.9342 31 1 1.8933 -0.5139 0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 5.7699 0.3783 -2.2295 34 1 2.0852 1.7522 2.1000 35 1 -0.1493 4.7177 -1.0891 36 1 0.8841 6.5410 -2.3761 37 1 4.1383 6.6723 0.3811 38 1 5.4211 3.6801 3.3146 39 1 5.9013 5.2848 3.9168 40 1 4.3522 4.5703 4.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186435009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:23 Heat of formation + Delta-G solvation = -157.941740 kcal Electronic energy + Delta-G solvation = -30250.161622 eV Core-core repulsion = 25879.802159 eV Total energy + Delta-G solvation = -4370.359463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.18228 -40.59298 -38.68630 -36.94930 -36.42260 -35.75139 -35.27240 -32.25345 -31.89997 -30.96131 -30.81680 -27.73401 -27.14099 -24.53641 -23.29440 -22.66347 -21.31540 -20.35385 -19.15626 -18.54156 -17.78232 -17.36108 -16.92480 -16.47689 -16.36162 -16.06050 -16.03169 -15.78119 -15.47080 -14.59856 -14.56334 -13.93944 -13.61011 -13.57737 -13.45495 -13.37379 -13.11984 -12.79222 -12.45689 -12.19078 -12.04799 -11.91937 -11.79812 -11.57210 -11.40617 -11.36746 -11.00543 -10.85334 -10.72647 -10.64774 -10.62819 -10.36876 -9.95332 -9.67484 -9.45887 -9.36596 -9.25036 -8.58183 -8.30079 -6.23468 -4.20282 0.21241 0.76937 1.04287 2.41610 2.62092 3.18595 3.29038 3.31659 3.33378 3.64746 3.88244 4.20987 4.30064 4.36356 4.61991 4.76442 4.94060 5.06226 5.22507 5.30021 5.35512 5.37665 5.48495 5.64798 5.68260 5.80929 5.84972 6.00173 6.02403 6.12380 6.32995 6.39454 6.49922 6.65387 6.76356 6.89440 7.18542 7.31908 7.48187 7.66819 8.11181 8.38376 8.84278 9.40581 10.88921 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009131 B = 0.006233 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.761899 B = 4490.805010 C = 4827.465558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.253 3.747 4 H 0.034 0.966 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.846 3.154 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.243 1.243 13 N -1.074 6.074 14 S 2.701 3.299 15 O -0.969 6.969 16 O -0.957 6.957 17 C -0.629 4.629 18 C -0.005 4.005 19 C -0.145 4.145 20 C 0.137 3.863 21 F -0.129 7.129 22 C -0.118 4.118 23 C 0.016 3.984 24 C 0.500 3.500 25 O -0.461 6.461 26 O -0.349 6.349 27 C 0.036 3.964 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.265 0.735 34 H 0.419 0.581 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 10.225 3.210 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.051 0.949 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.522 5.522 9 Si 0.672 3.328 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.167 1.167 13 N -0.837 5.837 14 S 2.785 3.215 15 O -0.959 6.959 16 O -0.947 6.947 17 C -0.711 4.711 18 C -0.024 4.024 19 C -0.164 4.164 20 C 0.117 3.883 21 F -0.107 7.107 22 C -0.138 4.138 23 C 0.013 3.987 24 C 0.343 3.657 25 O -0.347 6.347 26 O -0.266 6.266 27 C -0.057 4.057 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.480 10.047 3.514 11.972 hybrid contribution 0.779 0.181 -1.230 1.468 sum -4.701 10.228 2.283 11.486 Atomic orbital electron populations 1.21865 0.97407 0.99822 1.01832 1.22241 0.93754 0.99250 1.01852 1.18835 0.96393 0.89908 0.80143 0.94873 1.21195 0.89357 1.43418 1.03105 0.90285 1.24853 0.94779 0.94077 0.98553 1.69953 1.11744 1.43166 1.27378 0.87463 0.83051 0.78465 0.83824 1.20384 1.20921 1.16682 1.55163 1.66047 1.46088 1.16394 1.01786 0.73407 0.73241 0.73076 1.93564 1.46311 1.81404 1.74619 1.93566 1.86681 1.81492 1.33004 1.31577 1.06316 1.21329 1.11918 1.20842 0.98942 0.92390 0.90208 1.21487 0.94988 0.98116 1.01841 1.17697 0.92604 0.87178 0.90781 1.91547 1.84458 1.57905 1.76805 1.21455 1.01302 0.96887 0.94110 1.18316 0.92648 0.95158 0.92551 1.20851 0.79634 0.81525 0.83729 1.90836 1.62440 1.25492 1.55965 1.86449 1.37628 1.54148 1.48358 1.23378 0.96682 0.99468 0.86207 0.94280 0.92893 0.93177 0.92095 0.91782 0.92506 0.74415 0.82080 0.83207 0.82450 0.90930 0.88062 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.08 37.15 0.34 -2.51 16 2 C -0.13 -2.74 4.81 -26.74 -0.13 -2.87 16 3 C 0.25 5.62 1.77 -69.08 -0.12 5.50 16 4 H 0.03 0.74 6.52 -51.93 -0.34 0.40 16 5 C -0.53 -13.69 9.28 -34.44 -0.32 -14.01 16 6 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 7 C 0.08 2.18 5.33 -17.82 -0.09 2.08 16 8 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 9 Si 0.85 19.73 25.76 -169.99 -4.38 15.36 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.24 -5.29 5.44 56.52 0.31 -4.98 16 13 N -1.07 -21.54 3.72 -5.88 -0.02 -21.56 16 14 S 2.70 51.36 4.74 -107.50 -0.51 50.85 16 15 O -0.97 -18.88 15.50 -57.17 -0.89 -19.77 16 16 O -0.96 -19.63 15.27 -67.23 -1.03 -20.66 16 17 C -0.63 -10.89 5.86 -39.17 -0.23 -11.12 16 18 C 0.00 -0.07 9.53 -39.65 -0.38 -0.45 16 19 C -0.14 -1.84 10.02 -39.42 -0.39 -2.23 16 20 C 0.14 1.86 7.29 -39.48 -0.29 1.57 16 21 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 22 C -0.12 -1.72 9.59 -39.10 -0.38 -2.09 16 23 C 0.02 0.26 5.87 -104.99 -0.62 -0.35 16 24 C 0.50 8.86 7.75 34.61 0.27 9.12 16 25 O -0.46 -8.87 9.51 -27.46 -0.26 -9.13 16 26 O -0.35 -5.28 9.83 -40.52 -0.40 -5.68 16 27 C 0.04 0.43 10.66 101.05 1.08 1.51 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.91 7.44 -51.93 -0.39 0.53 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.39 4.86 -51.93 -0.25 1.13 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.42 8.13 7.79 -34.48 -0.27 7.86 16 35 H 0.16 2.03 7.34 -52.49 -0.39 1.64 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.16 1.95 7.62 -52.48 -0.40 1.55 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.80 7.98 -51.93 -0.41 0.38 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -31.71 346.72 -7.34 -39.06 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.63 Total: 8.35 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.26 Total: -15.85 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.75 Total: -46.14 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -2.57 Total: -55.23 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.38 Total: 15.36 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.51 Total: 50.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.71 -7.34 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186435009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.885 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds