Wall clock time and date at job start Wed Apr 1 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47484 * 2 1 4 4 H 1.09001 * 109.47217 * 307.22036 * 3 2 1 5 5 C 1.50694 * 109.47398 * 187.21969 * 3 2 1 6 6 H 1.08006 * 120.00088 * 244.28962 * 5 3 2 7 7 C 1.37876 * 120.00127 * 64.28883 * 5 3 2 8 8 N 1.31520 * 119.99746 * 194.48041 * 7 5 3 9 9 Si 1.86794 * 120.00090 * 14.48338 * 7 5 3 10 10 H 1.48498 * 109.47131 * 91.35455 * 9 7 5 11 11 H 1.48496 * 109.47321 * 211.35319 * 9 7 5 12 12 H 1.48500 * 109.47218 * 331.35326 * 9 7 5 13 13 N 1.46505 * 109.46974 * 67.21657 * 3 2 1 14 14 S 1.65603 * 119.99944 * 244.35121 * 13 3 2 15 15 O 1.42104 * 106.40167 * 50.87869 * 14 13 3 16 16 O 1.42102 * 106.39889 * 183.79371 * 14 13 3 17 17 C 1.76197 * 107.21773 * 297.33801 * 14 13 3 18 18 C 1.37972 * 120.04957 * 117.77748 * 17 14 13 19 19 C 1.38312 * 120.17809 * 179.74453 * 18 17 14 20 20 C 1.38602 * 120.27674 * 0.54967 * 19 18 17 21 21 F 1.35095 * 119.94947 * 179.72433 * 20 19 18 22 22 C 1.38157 * 120.09769 * 359.70642 * 20 19 18 23 23 C 1.39607 * 120.05183 * 298.04927 * 17 14 13 24 24 C 1.47735 * 120.13547 * 0.02562 * 23 17 14 25 25 O 1.21473 * 120.00030 * 4.39958 * 24 23 17 26 26 O 1.34710 * 120.00316 * 184.40236 * 24 23 17 27 27 C 1.45196 * 117.00580 * 185.09044 * 26 24 23 28 28 H 1.09001 * 109.47471 * 174.63160 * 1 2 3 29 29 H 1.09002 * 109.47307 * 54.62805 * 1 2 3 30 30 H 1.09001 * 109.46973 * 294.63287 * 1 2 3 31 31 H 1.09001 * 109.47511 * 120.00340 * 2 1 3 32 32 H 1.09006 * 109.46774 * 240.00124 * 2 1 3 33 33 H 0.97006 * 119.99690 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99391 * 64.35228 * 13 3 2 35 35 H 1.07996 * 119.91086 * 0.02562 * 18 17 14 36 36 H 1.07996 * 119.86303 * 180.25702 * 19 18 17 37 37 H 1.08007 * 120.09099 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.47109 * 64.74182 * 27 26 24 39 39 H 1.08997 * 109.47151 * 184.74363 * 27 26 24 40 40 H 1.09003 * 109.46531 * 304.74619 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5751 1.9922 -0.8183 5 6 3.5363 1.4462 -0.1785 6 1 4.1734 1.8176 0.6105 7 6 4.0921 0.9754 -1.3492 8 7 5.3790 0.7099 -1.4059 9 14 3.0174 0.7148 -2.8546 10 1 3.0123 1.9499 -3.6790 11 1 3.5544 -0.4135 -3.6569 12 1 1.6311 0.4008 -2.4249 13 7 1.6985 2.0811 1.2735 14 16 0.6524 3.3646 1.3018 15 8 -0.4969 2.9618 0.5695 16 8 0.5983 3.8084 2.6507 17 6 1.3992 4.6666 0.3790 18 6 0.7879 5.1433 -0.7623 19 6 1.3691 6.1689 -1.4858 20 6 2.5745 6.7170 -1.0763 21 9 3.1391 7.7147 -1.7911 22 6 3.1992 6.2448 0.0619 23 6 2.6133 5.2136 0.7984 24 6 3.2757 4.7027 2.0161 25 8 2.8062 3.7525 2.6097 26 8 4.4004 5.2904 2.4681 27 6 5.0599 4.6676 3.6019 28 1 -0.3634 -1.0231 -0.0961 29 1 -0.3634 0.5949 -0.8380 30 1 -0.3633 0.4283 0.9342 31 1 1.8933 -0.5139 0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 5.7699 0.3783 -2.2295 34 1 2.0852 1.7522 2.1000 35 1 -0.1493 4.7177 -1.0891 36 1 0.8841 6.5410 -2.3761 37 1 4.1383 6.6723 0.3811 38 1 5.4211 3.6801 3.3146 39 1 5.9013 5.2848 3.9168 40 1 4.3522 4.5703 4.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186435009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:22 Heat of formation + Delta-G solvation = -179.317052 kcal Electronic energy + Delta-G solvation = -30251.088525 eV Core-core repulsion = 25879.802159 eV Total energy + Delta-G solvation = -4371.286366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.23160 -41.85424 -39.84160 -38.40670 -37.97474 -37.24749 -36.80313 -34.25228 -33.04399 -32.42204 -32.09207 -28.99473 -28.79657 -25.69275 -24.50149 -24.40757 -22.58112 -22.01124 -20.58890 -19.80496 -19.31466 -18.69786 -18.38755 -17.97175 -17.65951 -17.46786 -17.15999 -17.05590 -16.83961 -16.18336 -15.76961 -15.54843 -15.12207 -14.72492 -14.67728 -14.60355 -14.55526 -14.37967 -13.98716 -13.63331 -13.59108 -13.17300 -13.13045 -13.03971 -12.97672 -12.75944 -12.66870 -12.49849 -12.28373 -12.09765 -11.90706 -11.74864 -11.65895 -11.49830 -11.20666 -10.59491 -10.49741 -10.40659 -9.98435 -8.29080 -6.29165 -1.00510 -0.44149 -0.32427 1.18707 1.35059 1.41747 1.44945 1.49673 2.04706 2.21988 2.36237 2.74385 2.81634 3.04516 3.18618 3.53627 3.59192 3.82654 4.02745 4.19193 4.28436 4.31205 4.35068 4.39939 4.43403 4.53357 4.57762 4.68672 4.70346 4.74375 4.78537 5.05496 5.12449 5.23235 5.27238 5.43085 5.51347 5.59041 5.67230 6.27842 6.37075 6.55250 6.75064 7.34698 8.86618 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009131 B = 0.006233 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.761899 B = 4490.805010 C = 4827.465558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.257 3.743 4 H 0.040 0.960 5 C -0.525 4.525 6 H 0.042 0.958 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.217 1.217 13 N -1.078 6.078 14 S 2.711 3.289 15 O -0.975 6.975 16 O -0.978 6.978 17 C -0.650 4.650 18 C -0.009 4.009 19 C -0.129 4.129 20 C 0.140 3.860 21 F -0.121 7.121 22 C -0.118 4.118 23 C -0.011 4.011 24 C 0.490 3.510 25 O -0.487 6.487 26 O -0.348 6.348 27 C 0.029 3.971 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.418 0.582 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.173 0.827 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 11.338 1.559 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.150 3.850 4 H 0.058 0.942 5 C -0.564 4.564 6 H 0.060 0.940 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.139 1.139 13 N -0.839 5.839 14 S 2.799 3.201 15 O -0.965 6.965 16 O -0.968 6.968 17 C -0.736 4.736 18 C -0.028 4.028 19 C -0.148 4.148 20 C 0.120 3.880 21 F -0.099 7.099 22 C -0.138 4.138 23 C -0.013 4.013 24 C 0.334 3.666 25 O -0.376 6.376 26 O -0.264 6.264 27 C -0.064 4.064 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.200 0.800 36 H 0.210 0.790 37 H 0.191 0.809 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.078 11.151 1.895 13.343 hybrid contribution 1.370 -0.037 -0.652 1.518 sum -5.708 11.114 1.243 12.555 Atomic orbital electron populations 1.21828 0.95327 1.01544 1.01882 1.22205 0.95615 0.97954 1.01618 1.18690 0.93916 0.91153 0.81221 0.94242 1.21350 0.91122 1.42004 1.01898 0.94019 1.25585 0.95808 0.94089 1.01420 1.70085 1.13787 1.45241 1.28169 0.86627 0.82731 0.78476 0.80150 1.19692 1.21160 1.13883 1.55114 1.66121 1.47020 1.15631 1.01224 0.73027 0.73067 0.72785 1.93543 1.46711 1.81774 1.74519 1.93535 1.86976 1.81700 1.34636 1.31303 1.07176 1.21690 1.13428 1.21209 0.99583 0.92751 0.89278 1.21913 0.94109 0.96458 1.02304 1.17780 0.92838 0.87055 0.90322 1.91573 1.84398 1.57508 1.76457 1.21646 1.01810 0.96100 0.94198 1.18422 0.93221 0.96620 0.93072 1.21248 0.80048 0.81299 0.84011 1.90803 1.63237 1.26643 1.56904 1.86446 1.36808 1.53995 1.49169 1.23677 0.97704 0.99700 0.85293 0.91732 0.92899 0.93126 0.92112 0.92386 0.92569 0.74551 0.80037 0.79022 0.80945 0.92410 0.84033 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.08 71.98 0.65 -4.54 16 2 C -0.13 -5.43 4.81 30.59 0.15 -5.28 16 3 C 0.26 11.28 1.77 44.24 0.08 11.36 16 4 H 0.04 1.70 6.52 -2.39 -0.02 1.68 16 5 C -0.52 -27.51 9.28 25.60 0.24 -27.27 16 6 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 7 C 0.03 1.65 5.33 84.65 0.45 2.10 16 8 N -0.93 -54.72 13.96 21.45 0.30 -54.42 16 9 Si 0.90 39.76 25.76 68.60 1.77 41.53 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.22 -8.60 5.44 99.48 0.54 -8.06 16 13 N -1.08 -43.65 3.72 -172.52 -0.64 -44.29 16 14 S 2.71 102.43 4.74 -56.49 -0.27 102.16 16 15 O -0.98 -36.65 15.50 -128.00 -1.98 -38.64 16 16 O -0.98 -40.73 15.27 -118.39 -1.81 -42.53 16 17 C -0.65 -21.95 5.86 22.54 0.13 -21.82 16 18 C -0.01 -0.25 9.53 22.22 0.21 -0.03 16 19 C -0.13 -2.79 10.02 22.37 0.22 -2.56 16 20 C 0.14 3.41 7.29 22.34 0.16 3.57 16 21 F -0.12 -2.73 17.26 44.97 0.78 -1.96 16 22 C -0.12 -3.28 9.59 22.58 0.22 -3.07 16 23 C -0.01 -0.37 5.87 -20.10 -0.12 -0.49 16 24 C 0.49 17.80 7.75 70.33 0.55 18.35 16 25 O -0.49 -19.51 9.51 27.78 0.26 -19.24 16 26 O -0.35 -10.65 9.83 -56.20 -0.55 -11.20 16 27 C 0.03 0.70 10.66 113.37 1.21 1.91 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.75 7.44 -2.39 -0.02 1.73 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.40 4.86 -2.38 -0.01 2.39 16 33 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 34 H 0.42 16.85 7.79 -96.74 -0.75 16.09 16 35 H 0.18 3.97 7.34 -2.91 -0.02 3.95 16 36 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.17 4.08 7.62 -2.91 -0.02 4.06 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 1.68 7.98 -2.39 -0.02 1.66 16 Total: -1.00 -69.42 346.72 2.18 -67.23 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.18 Total: 29.16 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.15 Total: -27.79 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -0.34 Total: -98.71 kcal Atomic # 8 Polarization: -107.54 SS G_CDS: -4.08 Total: -111.62 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.77 Total: 41.53 kcal Atomic # 16 Polarization: 102.43 SS G_CDS: -0.27 Total: 102.16 kcal Total: -69.42 2.18 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186435009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.085 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds