Wall clock time and date at job start Wed Apr 1 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 H 1.09004 * 109.46809 * 304.08410 * 3 2 1 5 5 C 1.50700 * 109.47099 * 184.09085 * 3 2 1 6 6 H 1.08002 * 119.99840 * 240.00271 * 5 3 2 7 7 C 1.37875 * 120.00169 * 59.99405 * 5 3 2 8 8 N 1.31513 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99796 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47488 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47261 * 120.00302 * 9 7 5 12 12 H 1.48506 * 109.46919 * 240.00009 * 9 7 5 13 13 N 1.46496 * 109.47406 * 64.08706 * 3 2 1 14 14 S 1.65598 * 119.99951 * 233.18360 * 13 3 2 15 15 O 1.42100 * 106.40373 * 181.09669 * 14 13 3 16 16 O 1.42101 * 106.40138 * 314.01707 * 14 13 3 17 17 C 1.76203 * 107.22077 * 67.55488 * 14 13 3 18 18 C 1.37839 * 119.93589 * 109.03113 * 17 14 13 19 19 C 1.39687 * 119.87105 * 179.75532 * 18 17 14 20 20 C 1.47609 * 120.12115 * 180.27351 * 19 18 17 21 21 O 1.21486 * 119.99860 * 0.27218 * 20 19 18 22 22 O 1.34724 * 120.00251 * 180.26846 * 20 19 18 23 23 C 1.45197 * 117.00113 * 179.97438 * 22 20 19 24 24 C 1.39721 * 119.75648 * 0.54298 * 19 18 17 25 25 C 1.37795 * 119.87065 * 359.71023 * 24 19 18 26 26 C 1.38643 * 119.93846 * 289.31047 * 17 14 13 27 27 F 1.35093 * 119.87696 * 359.97438 * 26 17 14 28 28 H 1.08995 * 109.47632 * 305.46378 * 1 2 3 29 29 H 1.09007 * 109.47313 * 65.46545 * 1 2 3 30 30 H 1.09000 * 109.47412 * 185.45767 * 1 2 3 31 31 H 1.08998 * 109.47194 * 239.99697 * 2 1 3 32 32 H 1.08998 * 109.46817 * 119.99583 * 2 1 3 33 33 H 0.96999 * 120.00221 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00132 * 53.18304 * 13 3 2 35 35 H 1.08001 * 120.06586 * 359.97438 * 18 17 14 36 36 H 1.08994 * 109.46756 * 60.00757 * 23 22 20 37 37 H 1.09000 * 109.46707 * 179.97438 * 23 22 20 38 38 H 1.08988 * 109.47305 * 299.99944 * 23 22 20 39 39 H 1.07999 * 120.06109 * 179.68478 * 24 19 18 40 40 H 1.08002 * 119.93260 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6181 1.9770 -0.8512 5 6 3.5436 1.4437 -0.1014 6 1 4.1372 1.8924 0.6814 7 6 4.1614 0.8719 -1.1933 8 7 3.4386 0.3249 -2.1462 9 14 6.0252 0.8728 -1.3185 10 1 6.6012 1.5433 -0.1252 11 1 6.5176 -0.5266 -1.3851 12 1 6.4386 1.6019 -2.5444 13 7 1.6337 2.1041 1.2423 14 16 0.8186 3.5445 1.1850 15 8 0.5947 3.9328 2.5334 16 8 1.5078 4.3585 0.2460 17 6 -0.7679 3.2188 0.4910 18 6 -1.8918 3.2763 1.2868 19 6 -3.1494 3.0229 0.7341 20 6 -4.3573 3.0889 1.5800 21 8 -4.2592 3.3688 2.7581 22 8 -5.5684 2.8387 1.0456 23 6 -6.7119 2.9212 1.9367 24 6 -3.2592 2.7012 -0.6211 25 6 -2.1283 2.6415 -1.4061 26 6 -0.8828 2.8995 -0.8533 27 9 0.2226 2.8396 -1.6276 28 1 -0.3634 0.5962 0.8369 29 1 -0.3634 0.4268 -0.9349 30 1 -0.3634 -1.0230 0.0977 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8733 -0.0770 -2.9146 34 1 1.8421 1.6986 2.0984 35 1 -1.8007 3.5202 2.3350 36 1 -6.7771 3.9269 2.3518 37 1 -7.6225 2.6984 1.3806 38 1 -6.5945 2.2008 2.7461 39 1 -4.2285 2.4994 -1.0524 40 1 -2.2120 2.3933 -2.4539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:50 Heat of formation + Delta-G solvation = -193.235212 kcal Electronic energy + Delta-G solvation = -29382.257857 eV Core-core repulsion = 25010.367954 eV Total energy + Delta-G solvation = -4371.889903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.53825 -41.73807 -39.86225 -38.38733 -37.68967 -37.56362 -36.99733 -34.15296 -32.92980 -32.42265 -32.21009 -28.68149 -28.51220 -25.32075 -24.91618 -24.80100 -22.48241 -21.97879 -20.70140 -19.76629 -19.13541 -18.78582 -18.41605 -18.06289 -17.57087 -17.45061 -17.37991 -17.01888 -16.79003 -16.29507 -15.47021 -15.46398 -15.05847 -14.93232 -14.83332 -14.65305 -14.50379 -14.17627 -13.72757 -13.54845 -13.32592 -13.27631 -13.23700 -13.14128 -13.05984 -12.93286 -12.69561 -12.60525 -12.12950 -12.06877 -11.84170 -11.83574 -11.70541 -11.54649 -11.25261 -10.84332 -10.41578 -10.20497 -10.02648 -8.08371 -6.19720 -0.88608 -0.66170 -0.39349 1.11028 1.42211 1.45676 1.50647 1.55640 2.01830 2.25840 2.46445 2.59545 2.76163 3.16527 3.20124 3.43079 3.55538 3.75118 3.94987 4.19446 4.33382 4.37404 4.46602 4.49256 4.54032 4.56437 4.65406 4.71842 4.77355 4.82579 4.86285 5.14803 5.18843 5.30562 5.36989 5.39303 5.69218 5.84046 6.06782 6.25734 6.43506 6.53592 6.85894 7.47154 8.94993 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.003617 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.818828 B = 7739.070912 C = 8218.838177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.254 3.746 4 H 0.064 0.936 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.906 5.906 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.283 1.283 13 N -1.094 6.094 14 S 2.696 3.304 15 O -0.983 6.983 16 O -0.982 6.982 17 C -0.731 4.731 18 C 0.064 3.936 19 C -0.166 4.166 20 C 0.520 3.480 21 O -0.531 6.531 22 O -0.347 6.347 23 C 0.028 3.972 24 C 0.042 3.958 25 C -0.172 4.172 26 C 0.217 3.783 27 F -0.114 7.114 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.417 0.583 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.140 0.860 38 H 0.063 0.937 39 H 0.200 0.800 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 0.979 1.645 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.149 3.851 4 H 0.081 0.919 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.545 5.545 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.208 1.208 13 N -0.855 5.855 14 S 2.785 3.215 15 O -0.974 6.974 16 O -0.972 6.972 17 C -0.818 4.818 18 C 0.044 3.956 19 C -0.169 4.169 20 C 0.365 3.635 21 O -0.422 6.422 22 O -0.263 6.263 23 C -0.064 4.064 24 C 0.024 3.976 25 C -0.191 4.191 26 C 0.196 3.804 27 F -0.092 7.092 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.252 0.748 35 H 0.176 0.824 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.082 0.918 39 H 0.217 0.783 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.858 1.858 1.888 21.026 hybrid contribution 1.230 -0.502 0.113 1.333 sum -19.628 1.356 2.001 19.777 Atomic orbital electron populations 1.21881 0.96566 1.01479 1.00376 1.21765 0.94248 0.98369 1.02006 1.18978 0.94039 0.91245 0.80791 0.91917 1.21791 0.92983 1.37390 1.06187 0.93012 1.25522 1.02058 0.94943 0.95321 1.69933 1.36145 1.38600 1.09854 0.85648 0.81162 0.77825 0.77826 1.19930 1.20026 1.20849 1.55330 1.70996 1.42993 1.16196 1.01545 0.73677 0.73543 0.72735 1.93514 1.86605 1.82038 1.35199 1.93583 1.71860 1.66775 1.64985 1.30819 1.23549 1.24041 1.03416 1.20864 0.89103 0.85743 0.99883 1.19216 0.90425 1.11739 0.95473 1.20872 0.84205 0.72815 0.85579 1.90873 1.87444 1.45631 1.18216 1.86504 1.15369 1.80866 1.43568 1.23659 0.85194 1.02911 0.94676 1.21996 1.00526 0.85064 0.90024 1.21665 0.88902 1.04464 1.04062 1.17887 0.84707 0.91038 0.86807 1.91616 1.51227 1.91922 1.74388 0.93316 0.93722 0.92129 0.90234 0.94043 0.92626 0.74775 0.82369 0.91778 0.84247 0.91805 0.78313 0.79457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.00 71.98 0.65 -4.32 16 2 C -0.12 -5.34 5.44 30.59 0.17 -5.18 16 3 C 0.25 12.05 2.22 44.25 0.10 12.15 16 4 H 0.06 3.17 4.08 -2.38 -0.01 3.16 16 5 C -0.54 -29.56 8.84 25.60 0.23 -29.33 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.02 1.18 5.30 84.65 0.45 1.62 16 8 N -0.91 -49.41 11.30 21.45 0.24 -49.17 16 9 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -1.09 -44.66 4.69 -172.53 -0.81 -45.47 16 14 S 2.70 107.27 5.45 -56.49 -0.31 106.96 16 15 O -0.98 -39.63 16.97 -128.00 -2.17 -41.80 16 16 O -0.98 -46.82 16.67 -128.00 -2.13 -48.96 16 17 C -0.73 -23.68 4.91 22.27 0.11 -23.57 16 18 C 0.06 1.78 9.09 22.53 0.20 1.98 16 19 C -0.17 -3.68 5.87 -20.10 -0.12 -3.80 16 20 C 0.52 11.43 7.89 70.30 0.55 11.99 16 21 O -0.53 -14.97 16.13 19.88 0.32 -14.65 16 22 O -0.35 -5.43 9.81 -56.34 -0.55 -5.98 16 23 C 0.03 0.29 10.56 113.37 1.20 1.49 16 24 C 0.04 0.67 9.61 22.52 0.22 0.89 16 25 C -0.17 -3.49 9.99 22.27 0.22 -3.26 16 26 C 0.22 6.66 5.06 22.47 0.11 6.78 16 27 F -0.11 -4.42 12.58 44.97 0.57 -3.85 16 28 H 0.05 1.52 6.61 -2.39 -0.02 1.51 16 29 H 0.04 1.47 6.61 -2.38 -0.02 1.46 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 3.89 5.97 -2.39 -0.01 3.88 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.42 15.08 8.96 -96.75 -0.87 14.22 16 35 H 0.16 4.56 6.92 -2.91 -0.02 4.54 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.20 1.47 7.61 -2.91 -0.02 1.45 16 40 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -73.06 349.91 1.51 -71.55 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.24 Total: 18.41 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.09 Total: -32.56 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -0.57 Total: -94.64 kcal Atomic # 8 Polarization: -106.85 SS G_CDS: -4.54 Total: -111.39 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.57 Total: -3.85 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 107.27 SS G_CDS: -0.31 Total: 106.96 kcal Total: -73.06 1.51 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.686 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds