Wall clock time and date at job start Wed Apr 1 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99657 * 2 1 4 4 O 1.20821 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99720 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47332 * 180.02562 * 5 3 2 7 7 C 1.36941 * 120.00053 * 275.88265 * 6 5 3 8 8 H 1.08001 * 120.00188 * 146.90744 * 7 6 5 9 9 C 1.38807 * 119.99636 * 326.90936 * 7 6 5 10 10 N 1.31619 * 120.00225 * 335.78695 * 9 7 6 11 11 Si 1.86800 * 119.99861 * 155.79295 * 9 7 6 12 12 H 1.48497 * 109.47627 * 59.99449 * 11 9 7 13 13 H 1.48505 * 109.47117 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47037 * 299.99191 * 11 9 7 15 15 S 1.65599 * 120.00231 * 95.87749 * 6 5 3 16 16 O 1.42103 * 104.27650 * 333.93406 * 15 6 5 17 17 O 1.42099 * 104.28172 * 206.07667 * 15 6 5 18 18 C 1.81396 * 104.44928 * 90.00253 * 15 6 5 19 19 C 1.50701 * 109.47129 * 180.02562 * 18 15 6 20 20 C 1.38220 * 120.01263 * 90.00272 * 19 18 15 21 21 C 1.38231 * 120.02517 * 179.74856 * 20 19 18 22 22 C 1.38267 * 120.04976 * 0.24590 * 21 20 19 23 23 C 1.50699 * 119.98667 * 179.97438 * 22 21 20 24 24 C 1.38174 * 120.02328 * 0.02562 * 22 21 20 25 25 C 1.38436 * 120.01549 * 270.25521 * 19 18 15 26 26 F 1.35101 * 120.02465 * 359.97438 * 25 19 18 27 27 H 1.08995 * 109.47280 * 60.00170 * 1 2 3 28 28 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47390 * 299.99735 * 1 2 3 30 30 H 1.08999 * 109.47415 * 60.00136 * 5 3 2 31 31 H 1.09010 * 109.47350 * 299.99962 * 5 3 2 32 32 H 0.96999 * 120.00096 * 180.02562 * 10 9 7 33 33 H 1.08990 * 109.47374 * 60.00321 * 18 15 6 34 34 H 1.08998 * 109.47041 * 300.00180 * 18 15 6 35 35 H 1.07996 * 119.99041 * 0.02562 * 20 19 18 36 36 H 1.07997 * 119.96994 * 180.27576 * 21 20 19 37 37 H 1.09007 * 109.46965 * 90.00129 * 23 22 21 38 38 H 1.08990 * 109.47459 * 210.00247 * 23 22 21 39 39 H 1.09001 * 109.47229 * 330.00584 * 23 22 21 40 40 H 1.08005 * 120.00544 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.0587 3.3716 -1.1791 8 1 3.8331 4.4276 -1.2015 9 6 4.4268 2.7157 -2.3457 10 7 5.1417 1.6124 -2.2829 11 14 3.9076 3.3989 -4.0050 12 1 4.4612 4.7666 -4.1724 13 1 4.4239 2.5207 -5.0855 14 1 2.4253 3.4528 -4.0762 15 16 4.3579 3.4313 1.4270 16 8 3.6175 2.7153 2.4061 17 8 4.1028 4.8066 1.1768 18 6 6.1363 3.1414 1.6361 19 6 6.6030 3.7849 2.9164 20 6 6.5824 3.0682 4.0980 21 6 7.0154 3.6565 5.2715 22 6 7.4648 4.9641 5.2657 23 6 7.9359 5.6043 6.5461 24 6 7.4810 5.6843 4.0867 25 6 7.0478 5.0959 2.9104 26 9 7.0641 5.7990 1.7569 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9556 0.7811 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 5.3993 1.1542 -3.0981 33 1 6.6763 3.5737 0.7939 34 1 6.3271 2.0691 1.6783 35 1 6.2321 2.0466 4.1037 36 1 7.0031 3.0942 6.1935 37 1 9.0050 5.4294 6.6677 38 1 7.7452 6.6767 6.5077 39 1 7.3985 5.1696 7.3889 40 1 7.8317 6.7058 4.0826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194661076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:50 Heat of formation + Delta-G solvation = -169.816123 kcal Electronic energy + Delta-G solvation = -28970.351121 eV Core-core repulsion = 24599.476745 eV Total energy + Delta-G solvation = -4370.874375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.53696 -39.64337 -39.11801 -36.35015 -35.78920 -35.14953 -34.57448 -33.75042 -31.85193 -30.43675 -29.29762 -28.54290 -26.48631 -25.02032 -24.14817 -22.72776 -21.00622 -20.56673 -18.62500 -17.32097 -17.00364 -16.86059 -16.76761 -16.42141 -15.88483 -15.73870 -15.46911 -15.35900 -14.88265 -14.65183 -14.50683 -13.96234 -13.63903 -13.53419 -13.25410 -13.05924 -12.95291 -12.82186 -12.47078 -12.04621 -11.86714 -11.77330 -11.70119 -11.54611 -11.37277 -11.21109 -11.08553 -10.93429 -10.85763 -10.78007 -10.60672 -10.35907 -10.21025 -10.08942 -9.79370 -9.42346 -8.74131 -8.34515 -8.01692 -6.80576 -4.27872 1.02911 1.32039 1.61406 3.03570 3.09103 3.10179 3.18644 3.36471 3.66839 3.84015 4.13796 4.41845 4.53542 4.74062 4.79185 4.90006 5.10553 5.20397 5.30603 5.38325 5.46553 5.47593 5.54214 5.55077 5.60744 5.69320 5.78101 5.89387 5.93177 5.97869 6.15627 6.24515 6.36516 6.47713 6.51781 6.52992 6.83963 7.03891 7.05997 7.21700 8.09236 8.45528 8.59684 8.93702 10.16642 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004149 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.066969 B = 6746.332012 C = 8079.434125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.447 3.553 4 O -0.493 6.493 5 C 0.131 3.869 6 N -0.792 5.792 7 C -0.228 4.228 8 H 0.117 0.883 9 C 0.031 3.969 10 N -0.828 5.828 11 Si 0.928 3.072 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.266 1.266 15 S 2.479 3.521 16 O -0.995 6.995 17 O -0.964 6.964 18 C -0.614 4.614 19 C -0.104 4.104 20 C -0.087 4.087 21 C -0.130 4.130 22 C -0.072 4.072 23 C -0.111 4.111 24 C -0.155 4.155 25 C 0.106 3.894 26 F -0.127 7.127 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.281 0.719 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 -2.334 7.811 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.287 3.713 4 O -0.378 6.378 5 C 0.002 3.998 6 N -0.614 5.614 7 C -0.376 4.376 8 H 0.134 0.866 9 C -0.181 4.181 10 N -0.467 5.467 11 Si 0.752 3.248 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.191 1.191 15 S 2.580 3.420 16 O -0.984 6.984 17 O -0.954 6.954 18 C -0.731 4.731 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.148 4.148 22 C -0.072 4.072 23 C -0.168 4.168 24 C -0.174 4.174 25 C 0.086 3.914 26 F -0.105 7.105 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.322 -1.644 8.531 9.301 hybrid contribution 0.320 0.086 -1.209 1.254 sum 3.642 -1.558 7.321 8.324 Atomic orbital electron populations 1.23104 0.77966 1.02617 1.02156 1.86512 1.22289 1.34707 1.85120 1.24951 0.93298 0.80994 0.72080 1.90603 1.66751 1.36299 1.44181 1.20843 0.85613 0.85965 1.07385 1.53341 1.67437 1.18579 1.22011 1.19927 1.37799 0.96965 0.82887 0.86592 1.25829 0.94141 0.96803 1.01369 1.69855 1.28547 1.17369 1.30940 0.85933 0.79976 0.79556 0.79331 1.18747 1.20342 1.19135 1.13502 0.77720 0.75828 0.74953 1.93355 1.69224 1.73637 1.62231 1.93390 1.83696 1.34222 1.84055 1.30131 1.34691 1.08184 1.00068 1.19415 1.02505 0.93078 0.95601 1.21039 0.97988 1.00361 0.91139 1.21034 1.00704 0.94789 0.98269 1.19708 0.98571 0.94132 0.94827 1.20772 1.01338 1.00705 0.93948 1.20965 1.04115 1.01154 0.91170 1.17590 1.01133 0.90176 0.82508 1.91541 1.93969 1.78006 1.46993 0.92409 0.88894 0.92385 0.83462 0.88345 0.90817 0.85017 0.85633 0.84521 0.85251 0.90999 0.91368 0.91225 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.95 10.57 -39.26 -0.41 -7.37 16 3 C 0.45 10.02 7.99 36.00 0.29 10.31 16 4 O -0.49 -12.55 16.06 -18.75 -0.30 -12.85 16 5 C 0.13 2.87 5.47 -5.20 -0.03 2.84 16 6 N -0.79 -19.21 2.32 -61.09 -0.14 -19.35 16 7 C -0.23 -5.72 8.95 -15.06 -0.13 -5.86 16 8 H 0.12 3.03 7.31 -52.49 -0.38 2.64 16 9 C 0.03 0.72 4.98 -17.43 -0.09 0.64 16 10 N -0.83 -18.77 11.27 55.49 0.63 -18.15 16 11 Si 0.93 18.63 29.62 -169.99 -5.03 13.60 16 12 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 S 2.48 59.98 5.31 -107.50 -0.57 59.41 16 16 O -1.00 -25.13 16.97 -57.54 -0.98 -26.11 16 17 O -0.96 -26.43 16.85 -57.54 -0.97 -27.40 16 18 C -0.61 -12.36 6.12 36.01 0.22 -12.14 16 19 C -0.10 -1.96 5.15 -104.55 -0.54 -2.50 16 20 C -0.09 -1.40 9.70 -39.59 -0.38 -1.78 16 21 C -0.13 -1.75 9.70 -39.57 -0.38 -2.14 16 22 C -0.07 -0.94 5.88 -104.63 -0.62 -1.56 16 23 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 24 C -0.16 -2.35 9.68 -39.52 -0.38 -2.73 16 25 C 0.11 1.98 7.24 -39.42 -0.29 1.70 16 26 F -0.13 -2.58 16.48 2.25 0.04 -2.55 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.15 3.18 5.31 -51.93 -0.28 2.90 16 31 H 0.10 1.88 7.57 -51.92 -0.39 1.49 16 32 H 0.28 5.93 8.31 -40.82 -0.34 5.59 16 33 H 0.13 2.70 7.65 -51.93 -0.40 2.30 16 34 H 0.13 2.21 8.08 -51.92 -0.42 1.79 16 35 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -32.22 365.32 -7.95 -40.17 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.80 Total: 7.35 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.90 Total: -12.27 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.48 Total: -37.49 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -2.66 Total: -73.73 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: 59.98 SS G_CDS: -0.57 Total: 59.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.22 -7.95 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.647 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds