Wall clock time and date at job start Wed Apr 1 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99657 * 2 1 4 4 O 1.20821 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99720 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47332 * 180.02562 * 5 3 2 7 7 C 1.36941 * 120.00053 * 275.88265 * 6 5 3 8 8 H 1.08001 * 120.00188 * 146.90744 * 7 6 5 9 9 C 1.38807 * 119.99636 * 326.90936 * 7 6 5 10 10 N 1.31619 * 120.00225 * 335.78695 * 9 7 6 11 11 Si 1.86800 * 119.99861 * 155.79295 * 9 7 6 12 12 H 1.48497 * 109.47627 * 59.99449 * 11 9 7 13 13 H 1.48505 * 109.47117 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47037 * 299.99191 * 11 9 7 15 15 S 1.65599 * 120.00231 * 95.87749 * 6 5 3 16 16 O 1.42103 * 104.27650 * 333.93406 * 15 6 5 17 17 O 1.42099 * 104.28172 * 206.07667 * 15 6 5 18 18 C 1.81396 * 104.44928 * 90.00253 * 15 6 5 19 19 C 1.50701 * 109.47129 * 180.02562 * 18 15 6 20 20 C 1.38220 * 120.01263 * 90.00272 * 19 18 15 21 21 C 1.38231 * 120.02517 * 179.74856 * 20 19 18 22 22 C 1.38267 * 120.04976 * 0.24590 * 21 20 19 23 23 C 1.50699 * 119.98667 * 179.97438 * 22 21 20 24 24 C 1.38174 * 120.02328 * 0.02562 * 22 21 20 25 25 C 1.38436 * 120.01549 * 270.25521 * 19 18 15 26 26 F 1.35101 * 120.02465 * 359.97438 * 25 19 18 27 27 H 1.08995 * 109.47280 * 60.00170 * 1 2 3 28 28 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47390 * 299.99735 * 1 2 3 30 30 H 1.08999 * 109.47415 * 60.00136 * 5 3 2 31 31 H 1.09010 * 109.47350 * 299.99962 * 5 3 2 32 32 H 0.96999 * 120.00096 * 180.02562 * 10 9 7 33 33 H 1.08990 * 109.47374 * 60.00321 * 18 15 6 34 34 H 1.08998 * 109.47041 * 300.00180 * 18 15 6 35 35 H 1.07996 * 119.99041 * 0.02562 * 20 19 18 36 36 H 1.07997 * 119.96994 * 180.27576 * 21 20 19 37 37 H 1.09007 * 109.46965 * 90.00129 * 23 22 21 38 38 H 1.08990 * 109.47459 * 210.00247 * 23 22 21 39 39 H 1.09001 * 109.47229 * 330.00584 * 23 22 21 40 40 H 1.08005 * 120.00544 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.0587 3.3716 -1.1791 8 1 3.8331 4.4276 -1.2015 9 6 4.4268 2.7157 -2.3457 10 7 5.1417 1.6124 -2.2829 11 14 3.9076 3.3989 -4.0050 12 1 4.4612 4.7666 -4.1724 13 1 4.4239 2.5207 -5.0855 14 1 2.4253 3.4528 -4.0762 15 16 4.3579 3.4313 1.4270 16 8 3.6175 2.7153 2.4061 17 8 4.1028 4.8066 1.1768 18 6 6.1363 3.1414 1.6361 19 6 6.6030 3.7849 2.9164 20 6 6.5824 3.0682 4.0980 21 6 7.0154 3.6565 5.2715 22 6 7.4648 4.9641 5.2657 23 6 7.9359 5.6043 6.5461 24 6 7.4810 5.6843 4.0867 25 6 7.0478 5.0959 2.9104 26 9 7.0641 5.7990 1.7569 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9556 0.7811 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 5.3993 1.1542 -3.0981 33 1 6.6763 3.5737 0.7939 34 1 6.3271 2.0691 1.6783 35 1 6.2321 2.0466 4.1037 36 1 7.0031 3.0942 6.1935 37 1 9.0050 5.4294 6.6677 38 1 7.7452 6.6767 6.5077 39 1 7.3985 5.1696 7.3889 40 1 7.8317 6.7058 4.0826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194661076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:49 Heat of formation + Delta-G solvation = -190.445032 kcal Electronic energy + Delta-G solvation = -28971.245657 eV Core-core repulsion = 24599.476745 eV Total energy + Delta-G solvation = -4371.768912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.99681 -41.32451 -40.30073 -38.03024 -37.79389 -36.91214 -36.59326 -34.96441 -33.64023 -31.62742 -30.48667 -30.15007 -27.95455 -26.31328 -25.81793 -23.93649 -22.28191 -22.19159 -20.44576 -19.17840 -18.71496 -18.65966 -18.11564 -17.76084 -17.44259 -17.27146 -17.07165 -16.84774 -16.58468 -16.32164 -16.21214 -15.28616 -15.11896 -14.59261 -14.50153 -14.46185 -14.45341 -14.10293 -13.82232 -13.73490 -13.44800 -13.12727 -12.99685 -12.92207 -12.89868 -12.88193 -12.80328 -12.66025 -12.52779 -12.37622 -12.10272 -12.09296 -11.72649 -11.70379 -11.58180 -11.18330 -10.01646 -9.90755 -9.48452 -8.56170 -6.13760 -0.59487 0.10450 0.19245 1.33200 1.41646 1.47104 1.55603 1.77776 2.15266 2.39972 2.47886 2.74761 3.17119 3.19197 3.39250 3.49969 3.70160 3.90643 4.03159 4.09069 4.15339 4.23167 4.34371 4.36781 4.39659 4.52428 4.64776 4.67487 4.75487 4.82901 4.86864 5.01363 5.06522 5.09574 5.22771 5.27872 5.37420 5.44749 5.48566 5.86509 6.25530 6.61985 6.90014 7.12892 8.43020 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004149 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.066969 B = 6746.332012 C = 8079.434125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.446 3.554 4 O -0.533 6.533 5 C 0.125 3.875 6 N -0.806 5.806 7 C -0.268 4.268 8 H 0.089 0.911 9 C 0.012 3.988 10 N -0.836 5.836 11 Si 0.975 3.025 12 H -0.264 1.264 13 H -0.256 1.256 14 H -0.278 1.278 15 S 2.488 3.512 16 O -1.010 7.010 17 O -1.007 7.007 18 C -0.592 4.592 19 C -0.143 4.143 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.059 4.059 23 C -0.110 4.110 24 C -0.160 4.160 25 C 0.069 3.931 26 F -0.149 7.149 27 H 0.055 0.945 28 H 0.141 0.859 29 H 0.054 0.946 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.291 0.709 33 H 0.121 0.879 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 -3.682 9.877 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.287 3.713 4 O -0.422 6.422 5 C -0.004 4.004 6 N -0.628 5.628 7 C -0.414 4.414 8 H 0.106 0.894 9 C -0.200 4.200 10 N -0.474 5.474 11 Si 0.797 3.203 12 H -0.189 1.189 13 H -0.180 1.180 14 H -0.203 1.203 15 S 2.594 3.406 16 O -1.000 7.000 17 O -0.997 6.997 18 C -0.714 4.714 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.060 4.060 23 C -0.166 4.166 24 C -0.178 4.178 25 C 0.049 3.951 26 F -0.128 7.128 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.189 0.811 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.454 -3.035 10.547 11.844 hybrid contribution 0.026 0.463 -1.591 1.657 sum 4.480 -2.572 8.956 10.339 Atomic orbital electron populations 1.23527 0.75474 1.05719 1.01984 1.86487 1.24656 1.32586 1.84274 1.25104 0.93667 0.81342 0.71139 1.90581 1.67597 1.37774 1.46239 1.21060 0.85668 0.85081 1.08574 1.53089 1.69000 1.19356 1.21367 1.19715 1.41014 0.96400 0.84321 0.89357 1.26290 0.93652 0.97083 1.02936 1.69837 1.28070 1.17459 1.32022 0.85260 0.78810 0.79390 0.76844 1.18904 1.18006 1.20341 1.12433 0.78917 0.74671 0.74547 1.93320 1.70607 1.73521 1.62577 1.93333 1.85187 1.36519 1.84680 1.29738 1.30387 1.10014 1.01277 1.19513 1.05332 0.93858 0.95815 1.21373 0.97912 1.01083 0.91083 1.21555 0.98638 0.95138 0.98749 1.20301 0.96086 0.93910 0.95700 1.20908 1.02696 1.01114 0.91931 1.21343 1.03478 1.02403 0.90614 1.18111 1.03236 0.90621 0.83104 1.91476 1.94400 1.78468 1.48421 0.92568 0.84102 0.92718 0.83132 0.85988 0.89875 0.86030 0.83144 0.83077 0.81137 0.88913 0.90393 0.89229 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -13.44 10.57 -51.44 -0.54 -13.99 16 3 C 0.45 20.29 7.99 71.23 0.57 20.86 16 4 O -0.53 -28.08 16.06 21.98 0.35 -27.72 16 5 C 0.12 5.53 5.47 85.63 0.47 6.00 16 6 N -0.81 -40.55 2.32 -347.18 -0.80 -41.36 16 7 C -0.27 -14.17 8.95 84.03 0.75 -13.42 16 8 H 0.09 5.00 7.31 -2.91 -0.02 4.98 16 9 C 0.01 0.56 4.98 84.86 0.42 0.98 16 10 N -0.84 -37.99 11.27 21.65 0.24 -37.74 16 11 Si 0.97 38.72 29.62 68.60 2.03 40.76 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 14 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 15 S 2.49 124.85 5.31 -56.49 -0.30 124.55 16 16 O -1.01 -51.98 16.97 -127.65 -2.17 -54.14 16 17 O -1.01 -58.52 16.85 -127.65 -2.15 -60.67 16 18 C -0.59 -24.33 6.12 71.24 0.44 -23.89 16 19 C -0.14 -5.41 5.15 -19.82 -0.10 -5.51 16 20 C -0.10 -2.92 9.70 22.26 0.22 -2.70 16 21 C -0.12 -2.88 9.70 22.27 0.22 -2.66 16 22 C -0.06 -1.35 5.88 -19.87 -0.12 -1.47 16 23 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 24 C -0.16 -4.60 9.68 22.31 0.22 -4.38 16 25 C 0.07 2.62 7.24 22.37 0.16 2.78 16 26 F -0.15 -6.39 16.48 44.97 0.74 -5.65 16 27 H 0.06 1.61 8.13 -2.39 -0.02 1.60 16 28 H 0.14 2.60 8.14 -2.38 -0.02 2.59 16 29 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.15 6.56 5.31 -2.39 -0.01 6.55 16 31 H 0.12 4.66 7.57 -2.38 -0.02 4.64 16 32 H 0.29 12.03 8.31 -92.71 -0.77 11.26 16 33 H 0.12 5.24 7.65 -2.40 -0.02 5.22 16 34 H 0.15 5.25 8.08 -2.39 -0.02 5.23 16 35 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 39 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 40 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.36 365.32 3.63 -70.73 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.07 Total: 27.43 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 5.15 Total: -22.20 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.56 Total: -79.10 kcal Atomic # 8 Polarization: -152.01 SS G_CDS: -4.51 Total: -156.52 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.74 Total: -5.65 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 124.85 SS G_CDS: -0.30 Total: 124.55 kcal Total: -74.36 3.63 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.716 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds