Wall clock time and date at job start Wed Apr 1 2020 04:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47248 * 2 1 4 4 N 1.46505 * 109.46812 * 119.99528 * 2 1 3 5 5 C 1.46495 * 120.00104 * 294.50894 * 4 2 1 6 6 C 1.50695 * 109.47692 * 275.00348 * 5 4 2 7 7 H 1.08004 * 119.99897 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00544 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99599 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00143 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47469 * 59.99564 * 10 8 6 12 12 H 1.48493 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46841 * 299.99559 * 10 8 6 14 14 S 1.65594 * 120.00109 * 114.51432 * 4 2 1 15 15 O 1.42092 * 106.40622 * 203.55180 * 14 4 2 16 16 O 1.42101 * 106.39959 * 336.47339 * 14 4 2 17 17 C 1.76201 * 107.21798 * 90.00924 * 14 4 2 18 18 C 1.37844 * 120.06741 * 345.80112 * 17 14 4 19 19 C 1.38637 * 120.12508 * 179.76815 * 18 17 14 20 20 F 1.35104 * 119.87301 * 180.27677 * 19 18 17 21 21 C 1.38694 * 120.25125 * 0.50437 * 19 18 17 22 22 C 1.37800 * 120.12271 * 359.75319 * 21 19 18 23 23 C 1.39688 * 120.05846 * 166.07531 * 17 14 4 24 24 C 1.47593 * 120.12872 * 359.97438 * 23 17 14 25 25 O 1.21486 * 119.99577 * 6.75614 * 24 23 17 26 26 O 1.34724 * 120.00403 * 186.74669 * 24 23 17 27 27 H 1.09002 * 109.47142 * 300.00854 * 1 2 3 28 28 H 1.09000 * 109.46586 * 59.99997 * 1 2 3 29 29 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47387 * 239.99394 * 2 1 3 31 31 H 1.08997 * 109.47370 * 179.82743 * 3 2 1 32 32 H 1.09005 * 109.46882 * 299.82024 * 3 2 1 33 33 H 1.08996 * 109.47843 * 59.82235 * 3 2 1 34 34 H 1.09001 * 109.47164 * 35.00147 * 5 4 2 35 35 H 1.08997 * 109.47307 * 155.00330 * 5 4 2 36 36 H 0.96999 * 119.99664 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.93134 * 0.02562 * 18 17 14 38 38 H 1.07997 * 119.93916 * 179.72229 * 21 19 18 39 39 H 1.07995 * 120.06157 * 179.97438 * 22 21 19 40 40 H 0.96703 * 117.00256 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7662 -0.1237 2.5234 6 6 2.8339 0.8888 2.8484 7 1 3.6214 1.0904 2.1372 8 6 2.8051 1.5588 4.0532 9 7 1.8453 1.3145 4.9185 10 14 4.1282 2.8145 4.4556 11 1 4.1064 3.8990 3.4414 12 1 3.8727 3.3889 5.8009 13 1 5.4578 2.1532 4.4447 14 16 2.8553 -2.1117 1.0483 15 8 2.7071 -2.7954 2.2851 16 8 2.4750 -2.6732 -0.2004 17 6 4.5627 -1.6994 0.9091 18 6 4.9401 -0.4005 0.6434 19 6 6.2833 -0.0739 0.5384 20 9 6.6477 1.2019 0.2833 21 6 7.2543 -1.0526 0.6894 22 6 6.8885 -2.3554 0.9500 23 6 5.5363 -2.6894 1.0621 24 6 5.1383 -4.0829 1.3413 25 8 3.9647 -4.3959 1.3170 26 8 6.0765 -5.0080 1.6229 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0031 32 1 1.6793 1.9554 -0.8916 33 1 1.6742 1.9574 0.8883 34 1 0.7904 0.3619 2.5317 35 1 1.7822 -0.9200 3.2676 36 1 1.8248 1.7861 5.7659 37 1 4.1880 0.3648 0.5209 38 1 8.2991 -0.7934 0.6021 39 1 7.6453 -3.1167 1.0670 40 1 5.7675 -5.9073 1.7985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229771441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:43 Heat of formation + Delta-G solvation = -169.241631 kcal Electronic energy + Delta-G solvation = -30307.912336 eV Core-core repulsion = 25937.062873 eV Total energy + Delta-G solvation = -4370.849463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.05339 -40.59311 -38.61380 -37.08272 -36.45675 -36.30319 -35.00907 -32.86765 -31.64516 -31.23387 -30.66172 -27.14491 -26.53473 -24.87200 -23.61668 -22.90468 -21.75261 -20.30921 -18.92768 -18.37420 -17.74644 -17.38036 -17.10260 -16.53322 -16.17670 -15.90699 -15.69258 -15.58738 -15.22709 -14.74170 -14.49944 -14.00531 -13.79064 -13.67511 -13.24615 -13.13842 -12.93062 -12.60603 -12.43559 -12.18838 -11.91999 -11.80859 -11.64188 -11.50432 -11.35142 -11.17107 -11.11109 -10.98720 -10.83164 -10.65238 -10.52158 -10.38811 -10.32842 -9.93352 -9.74193 -9.51545 -9.00329 -8.51357 -8.14245 -6.14375 -4.20545 0.19263 0.81917 1.01258 2.28820 2.74311 3.22971 3.28823 3.30100 3.30323 3.52797 4.01958 4.26586 4.33279 4.47528 4.64827 4.78752 5.09785 5.20131 5.22246 5.30136 5.33187 5.56946 5.63156 5.67150 5.71254 5.72087 5.83796 5.98297 6.13045 6.24859 6.32114 6.39806 6.52967 6.55948 6.74461 7.03437 7.35856 7.38789 7.63184 7.67652 7.81245 8.09701 8.80412 9.44708 10.93514 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.006369 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.679575 B = 4395.439889 C = 5327.580013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 C -0.160 4.160 4 N -0.984 5.984 5 C 0.241 3.759 6 C -0.544 4.544 7 H 0.062 0.938 8 C 0.069 3.931 9 N -0.885 5.885 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.276 1.276 14 S 2.699 3.301 15 O -0.931 6.931 16 O -0.963 6.963 17 C -0.576 4.576 18 C -0.069 4.069 19 C 0.120 3.880 20 F -0.127 7.127 21 C -0.129 4.129 22 C -0.051 4.051 23 C -0.056 4.056 24 C 0.516 3.484 25 O -0.483 6.483 26 O -0.504 6.504 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.173 0.827 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 -4.927 -9.900 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 C -0.219 4.219 4 N -0.825 5.825 5 C 0.120 3.880 6 C -0.584 4.584 7 H 0.080 0.920 8 C -0.135 4.135 9 N -0.523 5.523 10 Si 0.712 3.288 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.202 1.202 14 S 2.783 3.217 15 O -0.921 6.921 16 O -0.953 6.953 17 C -0.656 4.656 18 C -0.087 4.087 19 C 0.100 3.900 20 F -0.105 7.105 21 C -0.148 4.148 22 C -0.070 4.070 23 C -0.059 4.059 24 C 0.359 3.641 25 O -0.371 6.371 26 O -0.316 6.316 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.190 0.810 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 7.945 -5.353 -9.796 13.702 hybrid contribution 1.441 1.014 0.560 1.849 sum 9.386 -4.339 -9.237 13.865 Atomic orbital electron populations 1.22090 0.95094 1.02054 1.02292 1.20770 0.95047 0.93954 0.86627 1.22321 1.00514 0.96055 1.02981 1.57802 1.67205 1.43119 1.14399 1.19271 0.97912 0.94843 0.75983 1.21578 1.11397 1.23145 1.02232 0.91950 1.24890 0.95671 0.96905 0.95999 1.69912 1.31999 1.41787 1.08561 0.86764 0.82353 0.81808 0.77864 1.19946 1.21047 1.20184 1.02296 0.72697 0.72611 0.74098 1.93567 1.84328 1.69952 1.44249 1.93515 1.80959 1.75737 1.45131 1.31695 1.28288 0.98797 1.06795 1.21402 0.96157 0.95902 0.95255 1.18063 0.93419 0.79348 0.99216 1.91553 1.92262 1.35765 1.90952 1.21313 1.00085 0.92460 1.00943 1.21325 0.94736 0.96259 0.94699 1.18476 0.94256 0.89119 1.04014 1.20780 0.83477 0.86224 0.73658 1.90971 1.18670 1.80677 1.46804 1.84465 1.41152 1.23775 1.82222 0.91281 0.92197 0.92660 0.89994 0.93101 0.92931 0.89211 0.93434 0.92801 0.92478 0.80985 0.83230 0.82741 0.72063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.26 37.16 0.34 -2.09 16 2 C 0.14 2.45 2.96 -67.92 -0.20 2.25 16 3 C -0.16 -2.57 7.94 37.16 0.30 -2.28 16 4 N -0.98 -20.26 1.85 -108.58 -0.20 -20.46 16 5 C 0.24 5.77 4.87 -5.20 -0.03 5.75 16 6 C -0.54 -13.53 7.50 -34.44 -0.26 -13.79 16 7 H 0.06 1.45 4.52 -52.48 -0.24 1.21 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.88 -24.63 13.29 55.43 0.74 -23.89 16 10 Si 0.88 20.37 29.54 -169.99 -5.02 15.35 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 S 2.70 58.17 4.00 -107.50 -0.43 57.74 16 15 O -0.93 -23.01 14.01 -67.12 -0.94 -23.95 16 16 O -0.96 -21.22 16.18 -64.11 -1.04 -22.26 16 17 C -0.58 -10.87 5.86 -39.18 -0.23 -11.10 16 18 C -0.07 -1.20 8.59 -39.58 -0.34 -1.54 16 19 C 0.12 1.82 7.31 -39.27 -0.29 1.53 16 20 F -0.13 -1.91 17.26 2.25 0.04 -1.87 16 21 C -0.13 -1.58 10.01 -39.57 -0.40 -1.98 16 22 C -0.05 -0.65 9.61 -39.18 -0.38 -1.02 16 23 C -0.06 -0.93 5.87 -104.98 -0.62 -1.55 16 24 C 0.52 8.48 8.09 34.55 0.28 8.76 16 25 O -0.48 -9.76 12.63 -29.50 -0.37 -10.13 16 26 O -0.50 -5.58 12.70 -40.56 -0.52 -6.09 16 27 H 0.07 1.13 6.89 -51.93 -0.36 0.77 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 31 H 0.05 0.80 5.09 -51.93 -0.26 0.54 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.64 6.73 -51.93 -0.35 1.29 16 34 H 0.05 1.15 6.74 -51.93 -0.35 0.81 16 35 H 0.05 1.45 6.91 -51.93 -0.36 1.09 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.17 3.01 2.56 -52.49 -0.13 2.88 16 38 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.15 1.39 7.63 -52.49 -0.40 0.99 16 40 H 0.42 2.64 9.11 45.56 0.42 3.05 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -33.72 340.11 -7.75 -41.47 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.23 Total: 4.30 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.91 Total: -15.34 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.54 Total: -44.35 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -2.87 Total: -62.44 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.43 Total: 57.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.72 -7.75 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229771441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.769 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds