Wall clock time and date at job start Wed Apr 1 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47248 * 2 1 4 4 N 1.46505 * 109.46812 * 119.99528 * 2 1 3 5 5 C 1.46495 * 120.00104 * 294.50894 * 4 2 1 6 6 C 1.50695 * 109.47692 * 275.00348 * 5 4 2 7 7 H 1.08004 * 119.99897 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00544 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99599 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00143 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47469 * 59.99564 * 10 8 6 12 12 H 1.48493 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46841 * 299.99559 * 10 8 6 14 14 S 1.65594 * 120.00109 * 114.51432 * 4 2 1 15 15 O 1.42092 * 106.40622 * 203.55180 * 14 4 2 16 16 O 1.42101 * 106.39959 * 336.47339 * 14 4 2 17 17 C 1.76201 * 107.21798 * 90.00924 * 14 4 2 18 18 C 1.37844 * 120.06741 * 345.80112 * 17 14 4 19 19 C 1.38637 * 120.12508 * 179.76815 * 18 17 14 20 20 F 1.35104 * 119.87301 * 180.27677 * 19 18 17 21 21 C 1.38694 * 120.25125 * 0.50437 * 19 18 17 22 22 C 1.37800 * 120.12271 * 359.75319 * 21 19 18 23 23 C 1.39688 * 120.05846 * 166.07531 * 17 14 4 24 24 C 1.47593 * 120.12872 * 359.97438 * 23 17 14 25 25 O 1.21486 * 119.99577 * 6.75614 * 24 23 17 26 26 O 1.34724 * 120.00403 * 186.74669 * 24 23 17 27 27 H 1.09002 * 109.47142 * 300.00854 * 1 2 3 28 28 H 1.09000 * 109.46586 * 59.99997 * 1 2 3 29 29 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47387 * 239.99394 * 2 1 3 31 31 H 1.08997 * 109.47370 * 179.82743 * 3 2 1 32 32 H 1.09005 * 109.46882 * 299.82024 * 3 2 1 33 33 H 1.08996 * 109.47843 * 59.82235 * 3 2 1 34 34 H 1.09001 * 109.47164 * 35.00147 * 5 4 2 35 35 H 1.08997 * 109.47307 * 155.00330 * 5 4 2 36 36 H 0.96999 * 119.99664 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.93134 * 0.02562 * 18 17 14 38 38 H 1.07997 * 119.93916 * 179.72229 * 21 19 18 39 39 H 1.07995 * 120.06157 * 179.97438 * 22 21 19 40 40 H 0.96703 * 117.00256 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7662 -0.1237 2.5234 6 6 2.8339 0.8888 2.8484 7 1 3.6214 1.0904 2.1372 8 6 2.8051 1.5588 4.0532 9 7 1.8453 1.3145 4.9185 10 14 4.1282 2.8145 4.4556 11 1 4.1064 3.8990 3.4414 12 1 3.8727 3.3889 5.8009 13 1 5.4578 2.1532 4.4447 14 16 2.8553 -2.1117 1.0483 15 8 2.7071 -2.7954 2.2851 16 8 2.4750 -2.6732 -0.2004 17 6 4.5627 -1.6994 0.9091 18 6 4.9401 -0.4005 0.6434 19 6 6.2833 -0.0739 0.5384 20 9 6.6477 1.2019 0.2833 21 6 7.2543 -1.0526 0.6894 22 6 6.8885 -2.3554 0.9500 23 6 5.5363 -2.6894 1.0621 24 6 5.1383 -4.0829 1.3413 25 8 3.9647 -4.3959 1.3170 26 8 6.0765 -5.0080 1.6229 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0031 32 1 1.6793 1.9554 -0.8916 33 1 1.6742 1.9574 0.8883 34 1 0.7904 0.3619 2.5317 35 1 1.7822 -0.9200 3.2676 36 1 1.8248 1.7861 5.7659 37 1 4.1880 0.3648 0.5209 38 1 8.2991 -0.7934 0.6021 39 1 7.6453 -3.1167 1.0670 40 1 5.7675 -5.9073 1.7985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229771441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:42 Heat of formation + Delta-G solvation = -193.048477 kcal Electronic energy + Delta-G solvation = -30308.944678 eV Core-core repulsion = 25937.062873 eV Total energy + Delta-G solvation = -4371.881806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.19254 -41.79148 -39.78995 -38.60865 -38.17245 -37.48399 -36.70801 -34.79373 -32.82641 -32.43774 -32.23778 -28.93738 -27.92150 -26.08029 -24.86787 -24.69637 -22.95953 -21.76886 -20.28944 -19.59158 -19.21603 -18.75420 -18.59876 -18.27853 -17.48122 -17.14295 -17.00876 -16.88411 -16.74687 -16.35622 -15.94301 -15.44846 -15.17548 -14.84412 -14.68957 -14.51693 -14.12884 -13.97741 -13.84838 -13.72293 -13.53423 -13.26086 -13.13200 -13.03176 -12.92165 -12.76257 -12.70720 -12.56679 -12.38581 -12.21372 -12.09535 -12.00685 -11.72649 -11.57061 -11.40224 -10.71766 -10.53951 -10.20189 -9.84414 -8.14947 -6.26200 -1.02887 -0.60404 -0.31994 1.09222 1.41713 1.42097 1.49089 1.64027 1.98252 2.14262 2.41956 2.69740 2.91647 3.17346 3.28671 3.62116 3.63426 3.73689 3.83010 4.01316 4.08877 4.28733 4.34210 4.48869 4.50843 4.60681 4.68494 4.76240 4.90924 4.93414 5.08700 5.16780 5.26003 5.30352 5.41102 5.43392 5.55094 5.69072 5.81407 5.95942 6.11197 6.65952 6.82314 7.41887 8.93538 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.006369 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.679575 B = 4395.439889 C = 5327.580013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 C -0.155 4.155 4 N -0.987 5.987 5 C 0.259 3.741 6 C -0.537 4.537 7 H 0.078 0.922 8 C 0.016 3.984 9 N -0.925 5.925 10 Si 0.943 3.057 11 H -0.260 1.260 12 H -0.287 1.287 13 H -0.271 1.271 14 S 2.702 3.298 15 O -0.977 6.977 16 O -0.981 6.981 17 C -0.600 4.600 18 C -0.086 4.086 19 C 0.112 3.888 20 F -0.125 7.125 21 C -0.103 4.103 22 C -0.030 4.030 23 C -0.080 4.080 24 C 0.516 3.484 25 O -0.533 6.533 26 O -0.478 6.478 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.164 0.836 38 H 0.201 0.799 39 H 0.201 0.799 40 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 -4.155 -11.439 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 C -0.213 4.213 4 N -0.828 5.828 5 C 0.136 3.864 6 C -0.577 4.577 7 H 0.096 0.904 8 C -0.184 4.184 9 N -0.565 5.565 10 Si 0.768 3.232 11 H -0.184 1.184 12 H -0.213 1.213 13 H -0.197 1.197 14 S 2.792 3.208 15 O -0.968 6.968 16 O -0.971 6.971 17 C -0.686 4.686 18 C -0.105 4.105 19 C 0.092 3.908 20 F -0.104 7.104 21 C -0.122 4.122 22 C -0.048 4.048 23 C -0.083 4.083 24 C 0.360 3.640 25 O -0.425 6.425 26 O -0.292 6.292 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.181 0.819 38 H 0.218 0.782 39 H 0.218 0.782 40 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 11.648 -4.611 -11.360 16.911 hybrid contribution 0.411 0.689 0.958 1.249 sum 12.059 -3.922 -10.402 16.401 Atomic orbital electron populations 1.22106 0.94081 1.01925 1.03328 1.21139 0.96062 0.94662 0.85618 1.22260 1.00615 0.94995 1.03457 1.57646 1.68074 1.42885 1.14154 1.18802 0.97449 0.93304 0.76893 1.21899 1.11390 1.22161 1.02201 0.90373 1.25695 0.97645 0.98956 0.96121 1.70053 1.34074 1.43320 1.09069 0.85833 0.79811 0.79869 0.77722 1.18431 1.21305 1.19655 1.01632 0.73784 0.72382 0.73003 1.93499 1.85706 1.71538 1.46026 1.93468 1.82150 1.76294 1.45184 1.31061 1.26518 1.00444 1.10565 1.21369 0.97631 0.95138 0.96322 1.18213 0.93054 0.80117 0.99439 1.91560 1.92056 1.35802 1.90957 1.21894 1.01783 0.91151 0.97325 1.21850 0.93476 0.97566 0.91901 1.18796 0.95798 0.88794 1.04908 1.20952 0.83272 0.87035 0.72707 1.90958 1.20820 1.81454 1.49234 1.84404 1.39174 1.24642 1.80988 0.92765 0.88567 0.93412 0.88625 0.92955 0.89293 0.91789 0.94581 0.96727 0.92682 0.81866 0.78197 0.78201 0.69508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.26 71.98 0.67 -4.23 16 2 C 0.13 4.53 2.96 44.99 0.13 4.66 16 3 C -0.16 -4.86 7.94 71.98 0.57 -4.29 16 4 N -0.99 -42.43 1.85 -497.42 -0.92 -43.35 16 5 C 0.26 13.07 4.87 85.63 0.42 13.49 16 6 C -0.54 -27.33 7.50 25.60 0.19 -27.14 16 7 H 0.08 3.65 4.52 -2.91 -0.01 3.64 16 8 C 0.02 0.83 5.46 84.66 0.46 1.29 16 9 N -0.93 -53.32 13.29 21.45 0.28 -53.03 16 10 Si 0.94 41.59 29.54 68.60 2.03 43.62 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 S 2.70 121.86 4.00 -56.49 -0.23 121.63 16 15 O -0.98 -51.60 14.01 -118.49 -1.66 -53.26 16 16 O -0.98 -45.01 16.18 -121.37 -1.96 -46.98 16 17 C -0.60 -22.65 5.86 22.53 0.13 -22.52 16 18 C -0.09 -2.90 8.59 22.27 0.19 -2.71 16 19 C 0.11 3.04 7.31 22.47 0.16 3.21 16 20 F -0.13 -3.34 17.26 44.97 0.78 -2.56 16 21 C -0.10 -1.98 10.01 22.28 0.22 -1.76 16 22 C -0.03 -0.61 9.61 22.53 0.22 -0.39 16 23 C -0.08 -2.54 5.87 -20.10 -0.12 -2.66 16 24 C 0.52 16.56 8.09 70.29 0.57 17.13 16 25 O -0.53 -22.22 12.63 29.67 0.37 -21.85 16 26 O -0.48 -9.30 12.70 -56.34 -0.72 -10.01 16 27 H 0.05 1.85 6.89 -2.39 -0.02 1.83 16 28 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 3.06 7.02 -2.39 -0.02 3.04 16 31 H 0.05 1.61 5.09 -2.39 -0.01 1.60 16 32 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.06 2.35 6.73 -2.39 -0.02 2.33 16 34 H 0.04 1.88 6.74 -2.39 -0.02 1.86 16 35 H 0.01 0.85 6.91 -2.39 -0.02 0.84 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.16 5.67 2.56 -2.91 -0.01 5.66 16 38 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.20 2.26 7.63 -2.91 -0.02 2.24 16 40 H 0.44 4.50 9.11 -74.06 -0.67 3.83 16 Total: -1.00 -78.69 340.11 2.25 -76.44 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.46 Total: 15.28 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.82 Total: -25.91 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -0.64 Total: -96.39 kcal Atomic # 8 Polarization: -128.14 SS G_CDS: -3.96 Total: -132.10 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 121.86 SS G_CDS: -0.23 Total: 121.63 kcal Total: -78.69 2.25 -76.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229771441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.612 kcal (2) G-P(sol) polarization free energy of solvation -78.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds