Wall clock time and date at job start Wed Apr 1 2020 04:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34726 * 117.00382 * 2 1 4 4 O 1.21486 * 119.99779 * 0.02562 * 3 2 1 5 5 C 1.47568 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.39918 * 120.17123 * 95.55848 * 5 3 2 7 7 F 1.35103 * 120.11438 * 359.97438 * 6 5 3 8 8 C 1.38270 * 119.76996 * 180.27437 * 6 5 3 9 9 C 1.38248 * 120.12439 * 359.71553 * 8 6 5 10 10 C 1.38431 * 120.34989 * 0.03103 * 9 8 6 11 11 C 1.37874 * 120.22698 * 359.97028 * 10 9 8 12 12 S 1.76202 * 120.06650 * 180.02562 * 11 10 9 13 13 O 1.42103 * 106.39863 * 261.00494 * 12 11 10 14 14 O 1.42092 * 106.40051 * 128.08601 * 12 11 10 15 15 N 1.65600 * 107.21683 * 14.54333 * 12 11 10 16 16 C 1.46506 * 119.99971 * 273.95982 * 15 12 11 17 17 C 1.46497 * 119.99898 * 93.95701 * 15 12 11 18 18 H 1.08997 * 109.47230 * 4.40696 * 17 15 12 19 19 C 1.52999 * 109.46855 * 244.40399 * 17 15 12 20 20 C 1.50704 * 109.46922 * 124.40748 * 17 15 12 21 21 H 1.07997 * 119.99944 * 359.97438 * 20 17 15 22 22 C 1.37874 * 119.99703 * 180.02562 * 20 17 15 23 23 N 1.31517 * 120.00175 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99878 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47002 * 119.99960 * 24 22 20 27 27 H 1.48498 * 109.47086 * 240.00005 * 24 22 20 28 28 H 1.09006 * 109.46478 * 59.99722 * 1 2 3 29 29 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46790 * 300.00110 * 1 2 3 31 31 H 1.08003 * 119.93983 * 179.74294 * 8 6 5 32 32 H 1.08000 * 119.82694 * 179.97438 * 9 8 6 33 33 H 1.08003 * 119.88288 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46847 * 270.00266 * 16 15 12 35 35 H 1.09000 * 109.46875 * 29.99592 * 16 15 12 36 36 H 1.08997 * 109.47015 * 149.99906 * 16 15 12 37 37 H 1.09004 * 109.47045 * 53.54053 * 19 17 15 38 38 H 1.08997 * 109.47866 * 293.53482 * 19 17 15 39 39 H 1.09011 * 109.46843 * 173.53384 * 19 17 15 40 40 H 0.96999 * 120.00148 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5374 1.2775 0.0006 6 6 4.2340 1.4310 -1.2031 7 9 3.5598 1.5088 -2.3713 8 6 5.6151 1.4966 -1.1935 9 6 6.3053 1.4168 0.0017 10 6 5.6209 1.2701 1.1961 11 6 4.2438 1.2031 1.2033 12 16 3.3770 1.0171 2.7261 13 8 3.0589 -0.3631 2.8406 14 8 2.3973 2.0458 2.7582 15 7 4.4479 1.3528 3.9438 16 6 5.3193 0.2966 4.4649 17 6 4.5239 2.7060 4.5000 18 1 3.7535 3.3292 4.0460 19 6 5.9017 3.3020 4.2047 20 6 4.3102 2.6491 5.9907 21 1 4.1348 1.7000 6.4752 22 6 4.3375 3.8089 6.7357 23 7 4.5505 4.9647 6.1456 24 14 4.0719 3.7385 8.5835 25 1 3.8552 2.3294 8.9990 26 1 5.2684 4.2800 9.2765 27 1 2.8815 4.5500 8.9437 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 6.1558 1.6109 -2.1214 32 1 7.3840 1.4681 0.0036 33 1 6.1677 1.2081 2.1254 34 1 4.8206 -0.2114 5.2904 35 1 5.5337 -0.4210 3.6730 36 1 6.2516 0.7365 4.8189 37 1 6.1038 3.2379 3.1355 38 1 6.6630 2.7465 4.7523 39 1 5.9200 4.3466 4.5158 40 1 4.5693 5.7807 6.6697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269633898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:39 Heat of formation + Delta-G solvation = -153.828771 kcal Electronic energy + Delta-G solvation = -29684.635129 eV Core-core repulsion = 25314.454017 eV Total energy + Delta-G solvation = -4370.181111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.31238 -40.65879 -38.95083 -36.81312 -36.51889 -36.35934 -35.43341 -32.70713 -32.15102 -31.09990 -29.24303 -27.87818 -25.71070 -25.28514 -24.66133 -23.57439 -21.51012 -20.81339 -19.11960 -18.27497 -17.76301 -17.43308 -17.20787 -16.67414 -16.41045 -15.95647 -15.93629 -15.86643 -15.43954 -15.36915 -14.63214 -13.95336 -13.78388 -13.60927 -13.36697 -13.17880 -12.91120 -12.87035 -12.59016 -12.46264 -12.16757 -12.06584 -11.88893 -11.63888 -11.45574 -11.33494 -11.05754 -10.97315 -10.88347 -10.86692 -10.62078 -10.51615 -10.33797 -10.07901 -9.74360 -9.30568 -9.18909 -8.52804 -8.15318 -6.12697 -4.19543 0.28633 0.61597 0.69152 1.81112 2.39178 2.94916 3.25343 3.27996 3.34319 3.38423 3.67766 3.99913 4.33474 4.36966 4.41740 4.57656 4.76697 4.99287 5.05795 5.06371 5.17574 5.19569 5.31834 5.41305 5.49034 5.53001 5.61659 5.78866 5.99171 6.10202 6.22333 6.32433 6.49663 6.62733 6.70633 6.90007 7.27845 7.44334 7.55168 7.71078 7.95063 8.18090 8.82918 9.46551 10.93784 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.004208 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.956452 B = 6652.237884 C = 7358.191191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.344 6.344 3 C 0.482 3.518 4 O -0.447 6.447 5 C -0.045 4.045 6 C 0.121 3.879 7 F -0.126 7.126 8 C -0.109 4.109 9 C -0.085 4.085 10 C -0.037 4.037 11 C -0.606 4.606 12 S 2.662 3.338 13 O -0.952 6.952 14 O -0.932 6.932 15 N -0.974 5.974 16 C 0.100 3.900 17 C 0.260 3.740 18 H 0.067 0.933 19 C -0.150 4.150 20 C -0.521 4.521 21 H 0.066 0.934 22 C 0.065 3.935 23 N -0.888 5.888 24 Si 0.900 3.100 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.011 0.989 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -9.403 -13.484 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C 0.321 3.679 4 O -0.330 6.330 5 C -0.049 4.049 6 C 0.101 3.899 7 F -0.105 7.105 8 C -0.128 4.128 9 C -0.103 4.103 10 C -0.056 4.056 11 C -0.687 4.687 12 S 2.747 3.253 13 O -0.942 6.942 14 O -0.922 6.922 15 N -0.816 5.816 16 C -0.046 4.046 17 C 0.158 3.842 18 H 0.085 0.915 19 C -0.210 4.210 20 C -0.561 4.561 21 H 0.084 0.916 22 C -0.138 4.138 23 N -0.526 5.526 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.891 -9.131 -13.465 16.524 hybrid contribution 0.214 0.390 0.233 0.502 sum 3.105 -8.741 -13.232 16.160 Atomic orbital electron populations 1.23481 0.75152 1.04446 1.03307 1.86680 1.24345 1.31280 1.83755 1.21112 0.88690 0.82946 0.75190 1.90944 1.65495 1.35596 1.41006 1.18440 0.89838 1.03530 0.93071 1.17509 0.90334 1.02237 0.79810 1.91553 1.80355 1.93456 1.45112 1.21324 0.91246 0.99483 1.00735 1.21385 1.01190 0.96661 0.91097 1.21104 0.91328 0.92935 1.00225 1.31758 1.06935 1.10379 1.19633 1.03267 0.74579 0.74258 0.73180 1.93589 1.82028 1.32861 1.85736 1.93672 1.54899 1.57886 1.85755 1.57460 1.56499 1.20171 1.47493 1.21350 0.95514 0.88848 0.98875 1.18972 0.95432 0.74982 0.94807 0.91531 1.22190 0.98205 1.04588 0.95984 1.21290 1.49820 0.93931 0.91065 0.91565 1.24913 0.94771 0.95213 0.98912 1.69883 1.49000 0.97990 1.35740 0.86417 0.77830 0.78284 0.84751 1.19640 1.20947 1.20863 0.91416 0.87258 0.90875 0.82956 0.83138 0.82627 0.92310 0.92946 0.90199 0.97005 0.94237 0.88884 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 101.05 1.07 1.44 16 2 O -0.34 -5.81 10.58 -40.56 -0.43 -6.24 16 3 C 0.48 9.17 5.25 34.54 0.18 9.35 16 4 O -0.45 -9.44 16.64 -20.59 -0.34 -9.78 16 5 C -0.05 -0.79 5.76 -104.92 -0.60 -1.39 16 6 C 0.12 1.72 7.29 -38.94 -0.28 1.44 16 7 F -0.13 -1.77 16.83 2.25 0.04 -1.73 16 8 C -0.11 -1.14 10.01 -39.57 -0.40 -1.53 16 9 C -0.08 -0.85 10.03 -39.51 -0.40 -1.24 16 10 C -0.04 -0.49 9.22 -39.64 -0.37 -0.86 16 11 C -0.61 -10.41 5.86 -39.18 -0.23 -10.64 16 12 S 2.66 54.65 4.83 -107.50 -0.52 54.13 16 13 O -0.95 -19.96 17.23 -57.17 -0.99 -20.94 16 14 O -0.93 -22.64 15.22 -58.87 -0.90 -23.53 16 15 N -0.97 -19.42 2.26 -115.85 -0.26 -19.68 16 16 C 0.10 1.60 8.49 59.85 0.51 2.11 16 17 C 0.26 6.14 2.66 -69.08 -0.18 5.96 16 18 H 0.07 1.79 6.76 -51.93 -0.35 1.44 16 19 C -0.15 -3.17 8.81 37.16 0.33 -2.84 16 20 C -0.52 -13.47 8.32 -34.44 -0.29 -13.76 16 21 H 0.07 1.69 7.40 -52.49 -0.39 1.30 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.18 11.39 55.43 0.63 -23.55 16 24 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.16 1.81 6.02 -52.48 -0.32 1.50 16 34 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 35 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 36 H 0.08 1.18 6.80 -51.93 -0.35 0.82 16 37 H 0.01 0.20 7.36 -51.93 -0.38 -0.18 16 38 H 0.04 0.77 7.08 -51.93 -0.37 0.40 16 39 H 0.09 2.22 6.27 -51.92 -0.33 1.89 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -33.92 355.76 -7.73 -41.65 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.55 Total: -0.84 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.76 Total: -10.36 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.37 Total: -43.23 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -2.65 Total: -60.49 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.52 Total: 54.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.92 -7.73 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269633898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.179 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds