Wall clock time and date at job start Wed Apr 1 2020 04:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34729 * 116.99961 * 2 1 4 4 O 1.21488 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.47569 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.39915 * 120.17202 * 84.73083 * 5 3 2 7 7 F 1.35092 * 120.11132 * 0.04473 * 6 5 3 8 8 C 1.38273 * 119.77410 * 180.02562 * 6 5 3 9 9 C 1.38252 * 120.12118 * 359.97438 * 8 6 5 10 10 C 1.38431 * 120.35247 * 359.75054 * 9 8 6 11 11 C 1.37882 * 120.22047 * 0.50740 * 10 9 8 12 12 S 1.76201 * 120.06127 * 179.77079 * 11 10 9 13 13 O 1.42104 * 106.40072 * 231.62526 * 12 11 10 14 14 O 1.42103 * 106.40387 * 98.70465 * 12 11 10 15 15 N 1.65601 * 107.21966 * 345.16371 * 12 11 10 16 16 C 1.46499 * 119.99889 * 93.50457 * 15 12 11 17 17 C 1.46494 * 120.00203 * 273.50957 * 15 12 11 18 18 H 1.09008 * 109.46997 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47582 * 119.99641 * 17 15 12 20 20 C 1.50701 * 109.47033 * 240.00116 * 17 15 12 21 21 H 1.07999 * 120.00038 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99921 * 179.97438 * 20 17 15 23 23 N 1.31515 * 120.00014 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99721 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47101 * 60.00339 * 24 22 20 26 26 H 1.48504 * 109.47186 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47603 * 299.99899 * 24 22 20 28 28 H 1.09005 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47197 * 299.99570 * 1 2 3 30 30 H 1.08999 * 109.47335 * 59.99858 * 1 2 3 31 31 H 1.08000 * 119.94050 * 179.97438 * 8 6 5 32 32 H 1.07999 * 119.82423 * 180.02562 * 9 8 6 33 33 H 1.07998 * 119.89145 * 180.25523 * 10 9 8 34 34 H 1.09000 * 109.47472 * 84.66780 * 16 15 12 35 35 H 1.09004 * 109.47328 * 324.66737 * 16 15 12 36 36 H 1.09003 * 109.47147 * 204.67277 * 16 15 12 37 37 H 1.08998 * 109.46899 * 59.99831 * 19 17 15 38 38 H 1.09005 * 109.47242 * 180.02562 * 19 17 15 39 39 H 1.09003 * 109.46844 * 299.99793 * 19 17 15 40 40 H 0.97001 * 119.99359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5372 1.2777 -0.0006 6 6 4.2448 1.2039 -1.2054 7 9 3.5812 1.0624 -2.3735 8 6 5.6256 1.2767 -1.1963 9 6 6.3048 1.4224 -0.0010 10 6 5.6096 1.5018 1.1935 11 6 4.2329 1.4254 1.2016 12 16 3.3526 1.5208 2.7249 13 8 2.4801 0.3996 2.7550 14 8 2.8988 2.8622 2.8429 15 7 4.4520 1.2904 3.9417 16 6 5.0940 2.4440 4.5770 17 6 4.7828 -0.0668 4.3829 18 1 4.2106 -0.7881 3.7993 19 6 6.2784 -0.3185 4.1810 20 6 4.4404 -0.2179 5.8427 21 1 4.0191 0.6140 6.3875 22 6 4.6652 -1.4183 6.4828 23 7 5.1779 -2.4314 5.8193 24 14 4.2415 -1.6053 8.2925 25 1 2.7901 -1.3603 8.4889 26 1 4.5755 -2.9816 8.7394 27 1 5.0214 -0.6233 9.0876 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 6.1745 1.2195 -2.1246 32 1 7.3833 1.4792 0.0005 33 1 6.1475 1.6197 2.1225 34 1 4.4493 2.8291 5.3670 35 1 5.2610 3.2225 3.8325 36 1 6.0493 2.1386 5.0039 37 1 6.8502 0.4028 4.7648 38 1 6.5243 -1.3286 4.5088 39 1 6.5259 -0.2093 3.1251 40 1 5.3356 -3.2760 6.2696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269633900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:43 Heat of formation + Delta-G solvation = -153.745556 kcal Electronic energy + Delta-G solvation = -29737.258251 eV Core-core repulsion = 25367.080748 eV Total energy + Delta-G solvation = -4370.177503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.30651 -40.64638 -38.92808 -36.78437 -36.52488 -36.37247 -35.41572 -32.71266 -32.12351 -31.10133 -29.22620 -27.79631 -25.79079 -25.26456 -24.62212 -23.55915 -21.48063 -20.79047 -19.11331 -18.26709 -17.74247 -17.46337 -17.17173 -16.64927 -16.43856 -15.94200 -15.88826 -15.83014 -15.44978 -15.33497 -14.63495 -13.92320 -13.75791 -13.63685 -13.35043 -13.18078 -12.92537 -12.87707 -12.59076 -12.45168 -12.10678 -12.05937 -11.84879 -11.63316 -11.43424 -11.32436 -11.04119 -10.96539 -10.87758 -10.78087 -10.63484 -10.52432 -10.37539 -10.07536 -9.73377 -9.38107 -9.17805 -8.51778 -8.16731 -6.13358 -4.20359 0.29912 0.62621 0.70273 1.77943 2.46675 2.98634 3.27729 3.27993 3.32510 3.36884 3.68807 4.01467 4.33866 4.36187 4.42178 4.62137 4.78698 4.99888 5.07129 5.12367 5.18450 5.26093 5.33833 5.44899 5.53527 5.59342 5.63598 5.80626 5.99338 6.14721 6.23159 6.33763 6.47485 6.61093 6.66033 6.86853 7.27265 7.44140 7.51541 7.69162 7.94792 8.17337 8.81398 9.45759 10.92459 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004342 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.747578 B = 6446.920076 C = 7077.917440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.326 6.326 3 C 0.492 3.508 4 O -0.474 6.474 5 C -0.049 4.049 6 C 0.121 3.879 7 F -0.126 7.126 8 C -0.109 4.109 9 C -0.084 4.084 10 C -0.036 4.036 11 C -0.605 4.605 12 S 2.663 3.337 13 O -0.932 6.932 14 O -0.953 6.953 15 N -0.974 5.974 16 C 0.100 3.900 17 C 0.264 3.736 18 H 0.062 0.938 19 C -0.154 4.154 20 C -0.521 4.521 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.012 0.988 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 5.631 -12.658 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.241 6.241 3 C 0.332 3.668 4 O -0.361 6.361 5 C -0.052 4.052 6 C 0.101 3.899 7 F -0.105 7.105 8 C -0.128 4.128 9 C -0.103 4.103 10 C -0.055 4.055 11 C -0.686 4.686 12 S 2.749 3.251 13 O -0.922 6.922 14 O -0.943 6.943 15 N -0.817 5.817 16 C -0.046 4.046 17 C 0.162 3.838 18 H 0.080 0.920 19 C -0.213 4.213 20 C -0.560 4.560 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.031 0.969 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.842 5.865 -12.653 14.067 hybrid contribution 0.148 -0.280 0.211 0.381 sum 1.990 5.585 -12.441 13.782 Atomic orbital electron populations 1.23444 0.75272 1.04533 1.02829 1.86686 1.24134 1.30694 1.82548 1.21112 0.88667 0.82978 0.73999 1.90944 1.65833 1.35816 1.43458 1.18460 0.90005 1.03614 0.93119 1.17518 0.90459 1.01983 0.79965 1.91548 1.80882 1.92940 1.45110 1.21328 0.91329 0.99420 1.00720 1.21388 1.01183 0.96625 0.91091 1.21119 0.91218 0.92891 1.00268 1.31714 1.07246 1.10106 1.19507 1.03228 0.74508 0.74202 0.73197 1.93651 1.60655 1.52127 1.85769 1.93594 1.78531 1.36457 1.85722 1.57475 1.62047 1.15214 1.46963 1.21352 0.99470 0.86156 0.97641 1.18902 0.93347 0.75040 0.96531 0.91995 1.22229 0.98037 1.04644 0.96435 1.21238 1.42492 0.98221 0.94093 0.91766 1.24895 0.94791 0.95525 0.98523 1.69838 1.43702 1.02804 1.36438 0.86531 0.79127 0.77136 0.84486 1.20101 1.21192 1.20165 0.87248 0.90984 0.91732 0.82961 0.83135 0.82542 0.92585 0.92914 0.89867 0.94323 0.88445 0.96862 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.51 16 2 O -0.33 -5.82 10.37 -41.09 -0.43 -6.24 16 3 C 0.49 9.44 5.20 34.54 0.18 9.62 16 4 O -0.47 -9.72 16.90 -19.26 -0.33 -10.05 16 5 C -0.05 -0.85 5.76 -104.93 -0.60 -1.46 16 6 C 0.12 1.73 7.29 -38.94 -0.28 1.44 16 7 F -0.13 -1.77 16.83 2.25 0.04 -1.73 16 8 C -0.11 -1.15 10.01 -39.56 -0.40 -1.55 16 9 C -0.08 -0.86 10.03 -39.51 -0.40 -1.26 16 10 C -0.04 -0.49 9.16 -39.64 -0.36 -0.85 16 11 C -0.61 -10.54 5.86 -39.17 -0.23 -10.77 16 12 S 2.66 55.18 4.85 -107.50 -0.52 54.66 16 13 O -0.93 -21.96 15.48 -57.84 -0.90 -22.85 16 14 O -0.95 -20.99 17.08 -57.17 -0.98 -21.97 16 15 N -0.97 -19.38 2.12 -115.85 -0.25 -19.62 16 16 C 0.10 1.63 9.08 59.85 0.54 2.17 16 17 C 0.26 6.08 2.60 -69.08 -0.18 5.91 16 18 H 0.06 1.60 7.01 -51.92 -0.36 1.23 16 19 C -0.15 -3.15 8.88 37.16 0.33 -2.82 16 20 C -0.52 -13.36 8.37 -34.44 -0.29 -13.65 16 21 H 0.06 1.64 7.65 -52.49 -0.40 1.23 16 22 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 24 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 1.88 6.03 -52.49 -0.32 1.56 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 36 H 0.08 1.25 6.44 -51.93 -0.33 0.92 16 37 H 0.04 0.72 6.67 -51.93 -0.35 0.38 16 38 H 0.10 2.26 6.07 -51.93 -0.32 1.95 16 39 H 0.01 0.22 6.82 -51.93 -0.35 -0.14 16 40 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -33.26 355.51 -7.62 -40.87 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.51 Total: -0.61 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.72 Total: -10.10 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.38 Total: -42.74 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -2.62 Total: -61.11 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.52 Total: 54.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.26 -7.62 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269633900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.872 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds