Wall clock time and date at job start Wed Apr 1 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00150 * 2 1 4 4 H 1.48499 * 109.47051 * 269.99908 * 3 2 1 5 5 H 1.48506 * 109.47098 * 29.99743 * 3 2 1 6 6 H 1.48495 * 109.47181 * 149.99520 * 3 2 1 7 7 C 1.37873 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99698 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00146 * 65.00260 * 14 11 10 16 16 H 1.08998 * 109.47245 * 25.00042 * 15 14 11 17 17 C 1.53003 * 109.47401 * 144.99992 * 15 14 11 18 18 C 1.50698 * 109.46987 * 294.99995 * 17 15 14 19 19 C 1.38244 * 119.97160 * 269.72695 * 18 17 15 20 20 C 1.38196 * 120.02381 * 179.72969 * 19 18 17 21 21 C 1.38462 * 119.97581 * 0.56286 * 20 19 18 22 22 F 1.35101 * 120.02917 * 179.68775 * 21 20 19 23 23 C 1.38467 * 119.94699 * 359.71101 * 21 20 19 24 24 C 1.38197 * 119.96852 * 359.97438 * 23 21 20 25 25 C 1.50698 * 109.47046 * 264.99781 * 15 14 11 26 26 O 1.20831 * 119.99950 * 359.97438 * 25 15 14 27 27 O 1.34230 * 120.00503 * 179.97438 * 25 15 14 28 28 H 0.97008 * 119.99981 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 30 30 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 31 31 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 32 32 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 33 33 H 0.97001 * 120.00004 * 244.99733 * 14 11 10 34 34 H 1.08994 * 109.46891 * 54.99837 * 17 15 14 35 35 H 1.09007 * 109.47125 * 174.99892 * 17 15 14 36 36 H 1.07997 * 119.98944 * 359.97372 * 19 18 17 37 37 H 1.08007 * 120.01597 * 180.25123 * 20 19 18 38 38 H 1.07995 * 120.01345 * 179.97438 * 23 21 20 39 39 H 1.08005 * 119.98240 * 180.02562 * 24 23 21 40 40 H 0.96695 * 117.00448 * 180.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6365 0.0001 12 8 6.3342 -2.1462 -1.2369 13 8 6.3341 -2.1461 1.2371 14 7 6.2487 -4.2402 -0.0004 15 6 5.9123 -5.0828 -1.1506 16 1 5.8183 -4.4615 -2.0412 17 6 7.0185 -6.1179 -1.3654 18 6 8.2964 -5.4156 -1.7459 19 6 8.5847 -5.1794 -3.0771 20 6 9.7537 -4.5306 -3.4269 21 6 10.6418 -4.1274 -2.4442 22 9 11.7879 -3.4986 -2.7853 23 6 10.3547 -4.3696 -1.1114 24 6 9.1820 -5.0128 -0.7638 25 6 4.6069 -5.7895 -0.8909 26 8 4.0181 -5.6081 0.1485 27 8 4.0981 -6.6203 -1.8142 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8745 -0.6808 -0.8905 31 1 3.6578 -3.1506 -0.8897 32 1 3.6585 -3.1502 0.8902 33 1 6.7135 -4.6215 0.7608 34 1 7.1733 -6.6805 -0.4449 35 1 6.7273 -6.8004 -2.1639 36 1 7.8943 -5.4985 -3.8438 37 1 9.9768 -4.3425 -4.4668 38 1 11.0468 -4.0559 -0.3441 39 1 8.9576 -5.2014 0.2757 40 1 3.2582 -7.0504 -1.6028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274966793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:44 Heat of formation + Delta-G solvation = -188.675683 kcal Electronic energy + Delta-G solvation = -28406.025915 eV Core-core repulsion = 24034.333728 eV Total energy + Delta-G solvation = -4371.692187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.07304 -40.68980 -39.42316 -36.88649 -36.55468 -35.89830 -35.61919 -33.94958 -32.20172 -31.48662 -31.38234 -28.89946 -25.99803 -25.24930 -23.33934 -21.96426 -21.41219 -21.29603 -19.32971 -18.31311 -17.93154 -17.76347 -17.36596 -16.93870 -16.59343 -16.10168 -15.99040 -15.75062 -15.51664 -15.40576 -14.89299 -14.35270 -14.30150 -13.93069 -13.73274 -13.65707 -13.59950 -13.16045 -12.79238 -12.45127 -12.07582 -11.99996 -11.92642 -11.81723 -11.74664 -11.70216 -11.57353 -11.25845 -11.23459 -11.20659 -11.04602 -10.46017 -10.22384 -9.98508 -9.56244 -9.35099 -9.28081 -8.80634 -8.65964 -6.15950 -4.17068 0.54684 0.84720 0.99354 1.95266 2.48945 2.98789 3.26360 3.30951 3.33804 3.38022 4.02785 4.04859 4.26867 4.35078 4.35998 4.37584 4.49598 4.63943 4.65563 4.86505 4.97086 4.98856 5.15445 5.19805 5.34783 5.43131 5.49361 5.62821 5.67884 5.75178 5.88157 5.96341 6.20092 6.24333 6.34156 6.63451 6.74030 6.82438 6.93311 7.54881 7.66206 8.37807 8.85947 9.43540 10.96492 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.003542 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.613256 B = 7903.812489 C = 9225.699751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.575 4.575 11 S 2.583 3.417 12 O -0.958 6.958 13 O -0.958 6.958 14 N -1.100 6.100 15 C 0.167 3.833 16 H 0.136 0.864 17 C -0.074 4.074 18 C -0.094 4.094 19 C -0.080 4.080 20 C -0.150 4.150 21 C 0.097 3.903 22 F -0.141 7.141 23 C -0.152 4.152 24 C -0.080 4.080 25 C 0.453 3.547 26 O -0.488 6.488 27 O -0.514 6.514 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.419 0.581 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.826 -17.091 -5.584 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.708 4.708 11 S 2.680 3.320 12 O -0.948 6.948 13 O -0.949 6.949 14 N -0.855 5.855 15 C 0.056 3.944 16 H 0.153 0.847 17 C -0.113 4.113 18 C -0.094 4.094 19 C -0.098 4.098 20 C -0.169 4.169 21 C 0.078 3.922 22 F -0.120 7.120 23 C -0.171 4.171 24 C -0.098 4.098 25 C 0.291 3.709 26 O -0.374 6.374 27 O -0.326 6.326 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 18.483 -15.917 -5.545 25.015 hybrid contribution -0.554 0.252 0.478 0.774 sum 17.929 -15.665 -5.068 24.342 Atomic orbital electron populations 1.69883 1.06199 1.27222 1.50060 1.24981 0.94820 0.99118 0.94165 0.86935 0.80730 0.83731 0.79120 1.19654 1.20711 1.18632 1.20835 0.87741 0.94921 1.52149 0.90404 1.19427 1.00035 0.87339 0.97801 1.30282 1.20309 1.09012 1.11220 1.05952 0.79315 0.72194 0.74510 1.93572 1.78524 1.77365 1.45369 1.93574 1.79274 1.77152 1.44860 1.55771 1.73495 1.29424 1.26850 1.20255 0.88965 0.93938 0.91223 0.84692 1.20773 0.90326 0.95852 1.04356 1.19646 0.95900 1.00396 0.93468 1.20937 0.95997 0.96997 0.95833 1.21140 0.94976 1.01198 0.99543 1.17766 0.83709 0.96998 0.93694 1.91500 1.47491 1.79934 1.93077 1.21159 0.99269 1.01950 0.94727 1.20924 0.92711 0.96570 0.99629 1.24169 0.87740 0.77417 0.81581 1.90801 1.60040 1.60035 1.26510 1.84475 1.42898 1.57008 1.48252 0.92387 0.94903 0.95444 0.86526 0.84673 0.74662 0.89231 0.87697 0.84535 0.84594 0.84636 0.84987 0.72644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 10 C -0.57 -10.99 4.72 37.16 0.18 -10.81 16 11 S 2.58 43.31 5.44 -107.50 -0.58 42.72 16 12 O -0.96 -17.84 17.39 -57.54 -1.00 -18.84 16 13 O -0.96 -18.64 18.08 -57.54 -1.04 -19.68 16 14 N -1.10 -12.72 4.23 -5.88 -0.02 -12.75 16 15 C 0.17 1.59 2.70 -69.08 -0.19 1.41 16 16 H 0.14 1.28 7.48 -51.93 -0.39 0.89 16 17 C -0.07 -0.48 4.91 -27.88 -0.14 -0.62 16 18 C -0.09 -0.78 4.95 -104.62 -0.52 -1.30 16 19 C -0.08 -0.66 9.70 -39.59 -0.38 -1.04 16 20 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 21 C 0.10 1.04 7.30 -39.41 -0.29 0.76 16 22 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 23 C -0.15 -1.49 10.03 -39.51 -0.40 -1.89 16 24 C -0.08 -0.71 9.30 -39.60 -0.37 -1.07 16 25 C 0.45 4.68 7.09 36.00 0.26 4.94 16 26 O -0.49 -6.74 15.71 -18.75 -0.29 -7.04 16 27 O -0.51 -3.87 13.23 -39.26 -0.52 -4.39 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 30 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 31 H 0.12 2.05 7.70 -51.92 -0.40 1.65 16 32 H 0.14 2.55 7.81 -51.93 -0.41 2.14 16 33 H 0.42 3.85 8.68 -34.47 -0.30 3.55 16 34 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.10 0.48 7.94 -51.93 -0.41 0.07 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.88 7.94 -52.48 -0.42 0.46 16 40 H 0.41 1.77 9.10 45.56 0.41 2.19 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -37.87 363.42 -8.58 -46.45 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.95 Total: 3.88 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.79 Total: -24.70 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.75 Total: -39.23 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.85 Total: -49.96 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 43.31 SS G_CDS: -0.58 Total: 42.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.87 -8.58 -46.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274966793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.223 kcal (2) G-P(sol) polarization free energy of solvation -37.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds