Wall clock time and date at job start Wed Apr 1 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47132 * 300.00371 * 3 2 1 6 6 H 1.48505 * 109.46990 * 60.00186 * 3 2 1 7 7 C 1.37880 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47086 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54406 * 68.37834 * 11 10 9 13 13 O 1.42106 * 110.54315 * 291.62892 * 11 10 9 14 14 N 1.65607 * 104.44901 * 180.02562 * 11 10 9 15 15 C 1.46495 * 119.99478 * 269.99795 * 14 11 10 16 16 C 1.50699 * 109.47405 * 264.99854 * 15 14 11 17 17 O 1.20825 * 119.99883 * 0.02562 * 16 15 14 18 18 O 1.34229 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00055 * 90.00109 * 14 11 10 20 20 C 1.50698 * 109.47266 * 94.99865 * 19 14 11 21 21 C 1.38271 * 119.98983 * 270.25508 * 20 19 14 22 22 C 1.38219 * 120.05279 * 180.25774 * 21 20 19 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98470 * 90.00006 * 20 19 14 27 27 H 0.97006 * 120.00432 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46886 * 59.99781 * 9 7 2 29 29 H 1.09001 * 109.47329 * 299.99999 * 9 7 2 30 30 H 1.09005 * 109.46491 * 60.00344 * 10 9 7 31 31 H 1.09001 * 109.47245 * 300.00307 * 10 9 7 32 32 H 1.08998 * 109.47890 * 25.00394 * 15 14 11 33 33 H 1.09003 * 109.46632 * 145.00284 * 15 14 11 34 34 H 0.96698 * 117.00116 * 180.02562 * 18 16 15 35 35 H 1.09007 * 109.46983 * 334.99928 * 19 14 11 36 36 H 1.08994 * 109.46978 * 215.00038 * 19 14 11 37 37 H 1.08000 * 119.97479 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 39 39 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 40 40 H 1.07994 * 120.01414 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6637 -5.4188 -1.2395 13 8 0.6647 -5.4205 1.2346 14 7 2.5205 -6.3927 -0.0032 15 6 3.0432 -6.9049 -1.2723 16 6 2.3079 -8.1662 -1.6460 17 8 1.4362 -8.5931 -0.9264 18 8 2.6212 -8.8153 -2.7784 19 6 3.0434 -6.9063 1.2652 20 6 2.3081 -8.1679 1.6377 21 6 1.1573 -8.0974 2.4010 22 6 0.4848 -9.2540 2.7479 23 6 0.9562 -10.4820 2.3230 24 6 2.1053 -10.5535 1.5543 25 9 2.5672 -11.7532 1.1390 26 6 2.7813 -9.3943 1.2118 27 1 -0.4851 0.8401 0.0004 28 1 0.6239 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8725 -3.6047 0.8878 31 1 2.8713 -3.6039 -0.8922 32 1 2.9012 -6.1569 -2.0523 33 1 4.1061 -7.1220 -1.1662 34 1 2.1219 -9.6194 -2.9760 35 1 2.9014 -6.1590 2.0459 36 1 4.1062 -7.1232 1.1587 37 1 0.7857 -7.1380 2.7295 38 1 -0.4119 -9.1980 3.3472 39 1 0.4285 -11.3854 2.5910 40 1 3.6780 -9.4489 0.6126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275269420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:18 Heat of formation + Delta-G solvation = -176.674729 kcal Electronic energy + Delta-G solvation = -28854.709775 eV Core-core repulsion = 24483.537988 eV Total energy + Delta-G solvation = -4371.171787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.90292 -40.33821 -39.10086 -36.77477 -36.59339 -35.71834 -35.48199 -33.96944 -31.85683 -31.24175 -30.48619 -28.55174 -25.83080 -25.46864 -22.76970 -22.03672 -21.79262 -21.37553 -18.68324 -18.20995 -17.79752 -17.32987 -17.05777 -16.58322 -16.27894 -16.17008 -15.96885 -15.59085 -15.45594 -15.34720 -14.69577 -14.60276 -14.22995 -13.65191 -13.49162 -13.47436 -13.10892 -12.91810 -12.57776 -12.38648 -12.11187 -11.90298 -11.82672 -11.65269 -11.60112 -11.39975 -11.30974 -11.19655 -11.14507 -11.01954 -10.71244 -10.47294 -10.45178 -9.87224 -9.53332 -9.13461 -8.87772 -8.59196 -8.56390 -6.18076 -4.24265 0.50535 1.20015 1.27192 2.22447 2.68443 3.06766 3.21734 3.29351 3.32187 3.66492 4.18619 4.24252 4.33875 4.35028 4.44268 4.63412 4.74628 4.92460 5.01580 5.05816 5.17201 5.19805 5.26508 5.37413 5.42168 5.50301 5.51107 5.73200 5.81885 6.07712 6.14703 6.25097 6.37348 6.42755 6.47278 6.55310 6.96334 7.22165 7.27261 7.74665 7.87821 8.10134 8.79453 9.41114 10.92859 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003059 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.312258 B = 9151.538446 C = 9789.528857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.583 3.417 12 O -0.958 6.958 13 O -0.951 6.951 14 N -0.986 5.986 15 C 0.135 3.865 16 C 0.451 3.549 17 O -0.484 6.484 18 O -0.521 6.521 19 C 0.161 3.839 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.096 4.096 23 C -0.151 4.151 24 C 0.088 3.912 25 F -0.148 7.148 26 C -0.124 4.124 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -19.019 1.266 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.682 3.318 12 O -0.948 6.948 13 O -0.941 6.941 14 N -0.819 5.819 15 C 0.007 3.993 16 C 0.289 3.711 17 O -0.369 6.369 18 O -0.333 6.333 19 C 0.036 3.964 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.170 4.170 24 C 0.069 3.931 25 F -0.127 7.127 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.166 0.834 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.709 -18.925 1.540 20.492 hybrid contribution 0.611 0.290 -0.375 0.773 sum 8.320 -18.635 1.165 20.441 Atomic orbital electron populations 1.69959 1.06140 1.27196 1.49419 1.25075 0.94975 0.99601 0.94826 0.86410 0.79924 0.83116 0.77818 1.19595 1.20772 1.20765 1.21020 0.93108 0.89623 1.52328 0.91893 1.18986 0.92688 0.90497 0.98978 1.30509 1.13745 1.17485 1.10302 1.06178 0.74782 0.76287 0.74549 1.93554 1.70749 1.85105 1.45391 1.93509 1.70615 1.84930 1.45056 1.57912 1.60148 1.54598 1.09222 1.20609 0.98774 0.92627 0.87258 1.24141 0.82569 0.86054 0.78297 1.90793 1.29706 1.65864 1.50570 1.84494 1.64046 1.42477 1.42310 1.20283 0.97497 0.93695 0.84877 1.19908 0.96325 0.94109 0.96848 1.21501 0.93832 0.99804 0.96651 1.21007 0.99582 0.91501 0.99296 1.21078 0.96197 0.99378 1.00332 1.17551 0.95566 0.80283 0.99683 1.91458 1.88544 1.43811 1.88874 1.20752 1.00755 0.91304 1.01531 0.92507 0.94861 0.94739 0.85920 0.86082 0.85580 0.86120 0.73360 0.87889 0.89103 0.83437 0.85203 0.85392 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.22 6.12 37.16 0.23 -9.99 16 11 S 2.58 43.72 5.32 -107.50 -0.57 43.15 16 12 O -0.96 -19.30 16.99 -57.54 -0.98 -20.28 16 13 O -0.95 -17.96 14.79 -57.54 -0.85 -18.81 16 14 N -0.99 -12.04 2.37 -116.96 -0.28 -12.32 16 15 C 0.14 1.35 5.87 -5.20 -0.03 1.32 16 16 C 0.45 5.48 7.82 36.01 0.28 5.76 16 17 O -0.48 -7.52 13.65 -18.75 -0.26 -7.77 16 18 O -0.52 -4.94 13.42 -39.26 -0.53 -5.47 16 19 C 0.16 1.66 5.44 -5.20 -0.03 1.63 16 20 C -0.07 -0.87 4.06 -104.63 -0.43 -1.30 16 21 C -0.10 -1.35 9.12 -39.58 -0.36 -1.71 16 22 C -0.10 -1.18 10.04 -39.59 -0.40 -1.58 16 23 C -0.15 -1.82 10.03 -39.51 -0.40 -2.22 16 24 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 25 F -0.15 -1.91 17.27 2.25 0.04 -1.88 16 26 C -0.12 -1.48 7.16 -39.51 -0.28 -1.77 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 31 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 32 H 0.13 1.15 7.61 -51.93 -0.40 0.76 16 33 H 0.12 0.68 8.00 -51.93 -0.42 0.26 16 34 H 0.41 2.50 9.10 45.56 0.41 2.92 16 35 H 0.10 0.98 7.55 -51.93 -0.39 0.59 16 36 H 0.09 0.60 7.95 -51.93 -0.41 0.19 16 37 H 0.15 2.12 6.45 -52.49 -0.34 1.79 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -36.81 359.93 -8.57 -45.39 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.04 Total: 3.23 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.25 Total: -21.13 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.46 Total: -37.40 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -2.61 Total: -52.33 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 43.72 SS G_CDS: -0.57 Total: 43.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.81 -8.57 -45.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275269420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.288 kcal (2) G-P(sol) polarization free energy of solvation -36.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds