Wall clock time and date at job start Wed Apr 1 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47336 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47132 * 300.00371 * 3 2 1 6 6 H 1.48505 * 109.46990 * 60.00186 * 3 2 1 7 7 C 1.37880 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47086 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54406 * 68.37834 * 11 10 9 13 13 O 1.42106 * 110.54315 * 291.62892 * 11 10 9 14 14 N 1.65607 * 104.44901 * 180.02562 * 11 10 9 15 15 C 1.46495 * 119.99478 * 269.99795 * 14 11 10 16 16 C 1.50699 * 109.47405 * 264.99854 * 15 14 11 17 17 O 1.20825 * 119.99883 * 0.02562 * 16 15 14 18 18 O 1.34229 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.46496 * 120.00055 * 90.00109 * 14 11 10 20 20 C 1.50698 * 109.47266 * 94.99865 * 19 14 11 21 21 C 1.38271 * 119.98983 * 270.25508 * 20 19 14 22 22 C 1.38219 * 120.05279 * 180.25774 * 21 20 19 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98470 * 90.00006 * 20 19 14 27 27 H 0.97006 * 120.00432 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46886 * 59.99781 * 9 7 2 29 29 H 1.09001 * 109.47329 * 299.99999 * 9 7 2 30 30 H 1.09005 * 109.46491 * 60.00344 * 10 9 7 31 31 H 1.09001 * 109.47245 * 300.00307 * 10 9 7 32 32 H 1.08998 * 109.47890 * 25.00394 * 15 14 11 33 33 H 1.09003 * 109.46632 * 145.00284 * 15 14 11 34 34 H 0.96698 * 117.00116 * 180.02562 * 18 16 15 35 35 H 1.09007 * 109.46983 * 334.99928 * 19 14 11 36 36 H 1.08994 * 109.46978 * 215.00038 * 19 14 11 37 37 H 1.08000 * 119.97479 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 39 39 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 40 40 H 1.07994 * 120.01414 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6637 -5.4188 -1.2395 13 8 0.6647 -5.4205 1.2346 14 7 2.5205 -6.3927 -0.0032 15 6 3.0432 -6.9049 -1.2723 16 6 2.3079 -8.1662 -1.6460 17 8 1.4362 -8.5931 -0.9264 18 8 2.6212 -8.8153 -2.7784 19 6 3.0434 -6.9063 1.2652 20 6 2.3081 -8.1679 1.6377 21 6 1.1573 -8.0974 2.4010 22 6 0.4848 -9.2540 2.7479 23 6 0.9562 -10.4820 2.3230 24 6 2.1053 -10.5535 1.5543 25 9 2.5672 -11.7532 1.1390 26 6 2.7813 -9.3943 1.2118 27 1 -0.4851 0.8401 0.0004 28 1 0.6239 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8725 -3.6047 0.8878 31 1 2.8713 -3.6039 -0.8922 32 1 2.9012 -6.1569 -2.0523 33 1 4.1061 -7.1220 -1.1662 34 1 2.1219 -9.6194 -2.9760 35 1 2.9014 -6.1590 2.0459 36 1 4.1062 -7.1232 1.1587 37 1 0.7857 -7.1380 2.7295 38 1 -0.4119 -9.1980 3.3472 39 1 0.4285 -11.3854 2.5910 40 1 3.6780 -9.4489 0.6126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275269420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:18 Heat of formation + Delta-G solvation = -203.408991 kcal Electronic energy + Delta-G solvation = -28855.869059 eV Core-core repulsion = 24483.537988 eV Total energy + Delta-G solvation = -4372.331071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.86905 -41.22312 -40.00282 -38.18999 -37.47725 -36.94593 -36.59582 -35.86892 -33.10698 -32.73750 -31.40870 -29.41195 -27.58675 -26.51006 -23.71719 -23.54012 -22.83961 -22.43103 -19.87093 -19.15122 -19.07316 -18.40248 -18.24070 -17.94470 -17.21997 -17.12765 -17.06953 -16.75692 -16.61142 -16.50478 -16.40630 -15.77400 -15.15170 -15.03160 -14.55113 -14.47213 -14.38322 -13.97449 -13.83407 -13.69258 -13.36762 -13.18767 -13.14544 -12.93173 -12.84215 -12.73585 -12.71018 -12.31592 -12.30718 -12.22177 -12.12736 -12.05636 -11.71391 -11.63331 -11.11709 -10.63659 -10.31885 -9.80256 -9.56070 -8.23901 -6.37735 -0.80840 0.25078 0.33659 1.35622 1.44118 1.44255 1.57452 1.63644 2.25696 2.40342 2.70501 2.93820 3.10205 3.16339 3.30549 3.54234 3.76426 3.90076 4.06542 4.12199 4.13469 4.27185 4.35983 4.41928 4.44824 4.53683 4.66058 4.76940 4.82741 4.96083 5.16317 5.19457 5.26876 5.31329 5.37511 5.47283 5.63449 5.71258 5.73290 6.03769 6.07847 6.77203 7.08854 7.32951 8.88489 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003059 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.312258 B = 9151.538446 C = 9789.528857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.018 3.982 10 C -0.580 4.580 11 S 2.600 3.400 12 O -0.997 6.997 13 O -0.979 6.979 14 N -0.974 5.974 15 C 0.122 3.878 16 C 0.448 3.552 17 O -0.527 6.527 18 O -0.514 6.514 19 C 0.152 3.848 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.157 4.157 24 C 0.072 3.928 25 F -0.151 7.151 26 C -0.119 4.119 27 H 0.266 0.734 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.178 0.822 34 H 0.421 0.579 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 -19.415 0.845 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.099 0.901 9 C -0.020 4.020 10 C -0.713 4.713 11 S 2.699 3.301 12 O -0.987 6.987 13 O -0.969 6.969 14 N -0.809 5.809 15 C -0.004 4.004 16 C 0.289 3.711 17 O -0.415 6.415 18 O -0.327 6.327 19 C 0.028 3.972 20 C -0.078 4.078 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.176 4.176 24 C 0.053 3.947 25 F -0.130 7.130 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.195 0.805 34 H 0.282 0.718 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.186 -19.327 1.099 22.357 hybrid contribution -0.473 0.272 -0.281 0.614 sum 10.713 -19.054 0.818 21.875 Atomic orbital electron populations 1.70113 1.08162 1.28197 1.51120 1.26123 0.95795 1.03935 0.94515 0.85283 0.79418 0.78079 0.77592 1.17477 1.20675 1.20644 1.21567 0.94174 0.90514 1.51079 0.90072 1.18837 0.93716 0.93249 0.96245 1.30352 1.12616 1.15141 1.13187 1.05306 0.75022 0.76609 0.73120 1.93498 1.72427 1.85776 1.46994 1.93476 1.72014 1.85390 1.46019 1.57390 1.59166 1.53262 1.11111 1.21159 1.01283 0.91811 0.86165 1.24622 0.81895 0.86465 0.78150 1.90796 1.31551 1.67173 1.52002 1.84464 1.63951 1.43124 1.41133 1.20696 0.99764 0.92763 0.83961 1.20148 0.95977 0.95321 0.96304 1.21604 0.95119 0.99516 0.98017 1.21223 1.00138 0.91450 0.99591 1.21299 0.96297 0.99888 1.00125 1.17815 0.96099 0.80604 1.00189 1.91446 1.88584 1.44000 1.88949 1.20963 1.01248 0.90624 1.01022 0.92507 0.97913 0.97590 0.83047 0.83229 0.84695 0.80498 0.71788 0.87428 0.84025 0.85026 0.83868 0.83746 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.92 13.29 21.45 0.28 -55.63 16 2 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 3 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.53 -28.17 9.11 25.60 0.23 -27.93 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.58 -19.39 6.12 71.98 0.44 -18.95 16 11 S 2.60 86.92 5.32 -56.49 -0.30 86.62 16 12 O -1.00 -40.66 16.99 -127.65 -2.17 -42.83 16 13 O -0.98 -37.82 14.79 -127.65 -1.89 -39.71 16 14 N -0.97 -21.17 2.37 -523.94 -1.24 -22.41 16 15 C 0.12 1.98 5.87 85.63 0.50 2.48 16 16 C 0.45 9.79 7.82 71.24 0.56 10.35 16 17 O -0.53 -15.75 13.65 21.97 0.30 -15.45 16 18 O -0.51 -8.39 13.42 -51.41 -0.69 -9.08 16 19 C 0.15 2.64 5.44 85.63 0.47 3.11 16 20 C -0.08 -1.76 4.06 -19.87 -0.08 -1.84 16 21 C -0.12 -3.38 9.12 22.27 0.20 -3.18 16 22 C -0.11 -2.63 10.04 22.26 0.22 -2.41 16 23 C -0.16 -3.71 10.03 22.31 0.22 -3.49 16 24 C 0.07 1.76 7.30 22.38 0.16 1.92 16 25 F -0.15 -3.70 17.27 44.97 0.78 -2.92 16 26 C -0.12 -2.59 7.16 22.31 0.16 -2.43 16 27 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.15 4.14 8.14 -2.39 -0.02 4.12 16 31 H 0.15 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.14 2.01 7.61 -2.39 -0.02 1.99 16 33 H 0.18 0.87 8.00 -2.39 -0.02 0.86 16 34 H 0.42 4.34 9.10 -74.06 -0.67 3.66 16 35 H 0.11 1.79 7.55 -2.38 -0.02 1.77 16 36 H 0.14 1.06 7.95 -2.39 -0.02 1.04 16 37 H 0.13 3.96 6.45 -2.91 -0.02 3.94 16 38 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -83.73 359.93 1.21 -82.52 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.41 Total: 16.21 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.70 Total: -41.13 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -0.96 Total: -78.04 kcal Atomic # 8 Polarization: -102.63 SS G_CDS: -4.45 Total: -107.08 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 86.92 SS G_CDS: -0.30 Total: 86.62 kcal Total: -83.73 1.21 -82.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275269420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.893 kcal (2) G-P(sol) polarization free energy of solvation -83.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds