Wall clock time and date at job start Wed Apr 1 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.09001 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46977 * 299.93844 * 3 2 1 6 6 H 1.08001 * 119.99679 * 115.90023 * 5 3 2 7 7 C 1.37876 * 120.00160 * 295.89760 * 5 3 2 8 8 N 1.31517 * 120.00087 * 353.48284 * 7 5 3 9 9 Si 1.86803 * 119.99995 * 173.47703 * 7 5 3 10 10 H 1.48499 * 109.46937 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47097 * 300.00296 * 9 7 5 12 12 H 1.48504 * 109.46989 * 60.00475 * 9 7 5 13 13 N 1.46500 * 109.47063 * 59.93981 * 3 2 1 14 14 S 1.65599 * 119.99793 * 95.70751 * 13 3 2 15 15 O 1.42103 * 106.39763 * 178.00207 * 14 13 3 16 16 O 1.42099 * 106.40129 * 310.92060 * 14 13 3 17 17 C 1.76193 * 107.22148 * 64.46188 * 14 13 3 18 18 C 1.38479 * 119.82423 * 89.99956 * 17 14 13 19 19 C 1.37837 * 120.22461 * 179.97438 * 18 17 14 20 20 C 1.39716 * 119.87386 * 0.02562 * 19 18 17 21 21 C 1.47563 * 120.17485 * 179.97438 * 20 19 18 22 22 O 1.21487 * 119.99949 * 180.02562 * 21 20 19 23 23 O 1.34734 * 119.99822 * 359.97438 * 21 20 19 24 24 C 1.45197 * 116.99890 * 180.02562 * 23 21 20 25 25 C 1.39881 * 119.65409 * 0.02562 * 20 19 18 26 26 F 1.35105 * 120.11384 * 179.97438 * 25 20 19 27 27 C 1.38206 * 119.82600 * 269.72500 * 17 14 13 28 28 H 1.08997 * 109.47110 * 305.00616 * 1 2 3 29 29 H 1.09006 * 109.46711 * 65.00787 * 1 2 3 30 30 H 1.09000 * 109.47183 * 185.00655 * 1 2 3 31 31 H 1.09006 * 109.47518 * 239.99523 * 2 1 3 32 32 H 1.09000 * 109.47375 * 120.00020 * 2 1 3 33 33 H 0.96997 * 119.99861 * 355.00990 * 8 7 5 34 34 H 0.96998 * 119.99375 * 275.70291 * 13 3 2 35 35 H 1.08000 * 119.88511 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.05989 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46715 * 180.02562 * 24 23 21 38 38 H 1.08996 * 109.47536 * 300.00150 * 24 23 21 39 39 H 1.08992 * 109.46991 * 60.00724 * 24 23 21 40 40 H 1.07999 * 119.93731 * 359.97438 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5389 2.1524 -1.2312 6 1 0.8645 2.9904 -1.1345 7 6 1.9416 1.7323 -2.4812 8 7 2.8598 0.7978 -2.5967 9 14 1.1827 2.4902 -4.0106 10 1 1.7817 1.8700 -5.2197 11 1 -0.2829 2.2511 -4.0066 12 1 1.4458 3.9517 -4.0215 13 7 1.5505 2.1335 1.1954 14 16 2.5056 2.2311 2.5447 15 8 1.7762 2.9912 3.4984 16 8 2.9789 0.9153 2.7973 17 6 3.9175 3.1940 2.1159 18 6 3.8913 4.5681 2.2852 19 6 4.9914 5.3293 1.9529 20 6 6.1364 4.7121 1.4430 21 6 7.3176 5.5206 1.0846 22 8 8.3114 4.9806 0.6410 23 8 7.2936 6.8577 1.2483 24 6 8.4907 7.5892 0.8742 25 6 6.1568 3.3238 1.2731 26 9 7.2590 2.7173 0.7803 27 6 5.0473 2.5732 1.6176 28 1 -0.3633 0.5895 0.8417 29 1 -0.3633 0.4342 -0.9315 30 1 -0.3633 -1.0237 0.0897 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3056 0.4556 -1.8061 34 1 0.6670 2.5338 1.1965 35 1 3.0059 5.0450 2.6790 36 1 4.9682 6.4007 2.0865 37 1 8.3381 8.6531 1.0560 38 1 9.3330 7.2364 1.4693 39 1 8.6998 7.4274 -0.1832 40 1 5.0622 1.5006 1.4928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277805704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:58 Heat of formation + Delta-G solvation = -180.098809 kcal Electronic energy + Delta-G solvation = -28786.944392 eV Core-core repulsion = 24415.624126 eV Total energy + Delta-G solvation = -4371.320266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.00783 -40.72107 -38.89405 -37.09655 -36.67733 -36.37170 -35.61112 -32.38980 -32.18723 -30.87591 -30.53572 -28.09303 -26.01006 -24.89519 -23.84726 -23.13521 -21.49943 -20.28083 -19.40701 -18.43228 -17.96935 -17.66919 -17.27843 -16.87513 -16.70298 -16.46267 -15.98629 -15.61803 -15.14409 -14.79227 -14.12602 -14.07586 -13.76265 -13.60612 -13.56997 -13.47331 -13.17249 -12.96292 -12.83695 -12.59960 -12.42026 -12.04544 -11.86312 -11.70329 -11.51094 -11.27500 -11.12770 -11.09416 -10.92526 -10.72088 -10.57378 -10.35899 -10.20507 -9.99329 -9.75003 -9.18100 -9.03252 -8.51385 -8.39282 -6.51662 -4.27623 -0.07564 0.68394 0.90634 2.07263 2.28148 3.11171 3.34514 3.35495 3.42931 3.54662 3.85484 3.97388 4.21772 4.36616 4.40085 4.64797 4.82112 4.85211 4.91123 4.99676 5.18425 5.19425 5.21927 5.50093 5.67396 5.70712 5.78144 5.91807 5.99541 6.11807 6.26717 6.35088 6.43227 6.74732 6.92859 7.10633 7.23442 7.31925 7.39742 7.53917 7.97398 8.26102 8.63588 9.40838 10.83616 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004356 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.287009 B = 6426.372681 C = 7883.704792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 C 0.266 3.734 4 H 0.031 0.969 5 C -0.602 4.602 6 H 0.059 0.941 7 C 0.029 3.971 8 N -0.901 5.901 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.288 1.288 13 N -1.087 6.087 14 S 2.687 3.313 15 O -0.969 6.969 16 O -0.953 6.953 17 C -0.608 4.608 18 C -0.045 4.045 19 C -0.056 4.056 20 C -0.121 4.121 21 C 0.507 3.493 22 O -0.485 6.485 23 O -0.352 6.352 24 C 0.037 3.963 25 C 0.149 3.851 26 F -0.109 7.109 27 C -0.060 4.060 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.272 0.728 34 H 0.414 0.586 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 10.635 8.641 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.161 3.839 4 H 0.049 0.951 5 C -0.642 4.642 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.536 5.536 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.849 5.849 14 S 2.772 3.228 15 O -0.959 6.959 16 O -0.943 6.943 17 C -0.692 4.692 18 C -0.064 4.064 19 C -0.075 4.075 20 C -0.123 4.123 21 C 0.351 3.649 22 O -0.372 6.372 23 O -0.269 6.269 24 C -0.057 4.057 25 C 0.128 3.872 26 F -0.087 7.087 27 C -0.079 4.079 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.885 9.947 7.623 13.450 hybrid contribution 0.602 0.706 0.899 1.292 sum 5.487 10.652 8.522 14.704 Atomic orbital electron populations 1.21506 0.96621 0.98682 1.01690 1.22037 0.96410 0.98723 1.00858 1.18694 0.93653 0.89096 0.82446 0.95120 1.21977 1.32615 1.18382 0.91203 0.92227 1.25714 0.95564 0.95363 1.01073 1.70814 1.22697 1.26218 1.33919 0.83609 0.75879 0.75581 0.75753 1.20713 1.21230 1.21488 1.55369 1.28114 1.70312 1.31112 1.02219 0.73288 0.73992 0.73267 1.93555 1.70411 1.72739 1.59238 1.93597 1.81640 1.35211 1.83843 1.31560 1.18554 1.08504 1.10534 1.20954 0.99091 0.91398 0.94935 1.21449 0.90598 1.01201 0.94242 1.19380 0.94816 0.91468 1.06628 1.20848 0.87053 0.81482 0.75547 1.90922 1.33435 1.72531 1.40349 1.86525 1.42266 1.19746 1.78323 1.23330 0.85190 0.95739 1.01396 1.17635 0.84371 0.89046 0.96151 1.91628 1.50174 1.82826 1.84090 1.20939 0.90269 1.01741 0.94976 0.94302 0.91795 0.95213 0.90650 0.94012 0.91644 0.75039 0.82650 0.82636 0.87681 0.91678 0.91535 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.48 37.16 0.35 -2.12 16 2 C -0.14 -3.02 5.58 -26.73 -0.15 -3.16 16 3 C 0.27 5.76 2.10 -69.08 -0.14 5.61 16 4 H 0.03 0.70 6.59 -51.93 -0.34 0.36 16 5 C -0.60 -14.47 7.54 -34.44 -0.26 -14.73 16 6 H 0.06 1.40 7.82 -52.49 -0.41 0.99 16 7 C 0.03 0.74 5.24 -17.82 -0.09 0.65 16 8 N -0.90 -24.54 12.83 55.43 0.71 -23.83 16 9 Si 1.06 23.08 29.91 -169.99 -5.08 17.99 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 13 N -1.09 -19.52 4.76 -5.88 -0.03 -19.54 16 14 S 2.69 45.00 5.64 -107.50 -0.61 44.40 16 15 O -0.97 -16.70 17.26 -57.17 -0.99 -17.68 16 16 O -0.95 -18.18 16.60 -57.17 -0.95 -19.13 16 17 C -0.61 -9.46 5.80 -39.50 -0.23 -9.69 16 18 C -0.04 -0.59 9.50 -39.64 -0.38 -0.96 16 19 C -0.06 -0.68 9.62 -39.18 -0.38 -1.06 16 20 C -0.12 -1.76 5.88 -104.93 -0.62 -2.37 16 21 C 0.51 7.30 7.89 34.53 0.27 7.57 16 22 O -0.49 -8.23 15.13 -19.26 -0.29 -8.52 16 23 O -0.35 -4.01 9.82 -40.58 -0.40 -4.41 16 24 C 0.04 0.30 10.56 101.05 1.07 1.37 16 25 C 0.15 2.43 7.29 -38.94 -0.28 2.15 16 26 F -0.11 -1.93 15.55 2.25 0.04 -1.89 16 27 C -0.06 -0.97 8.84 -39.57 -0.35 -1.32 16 28 H 0.04 0.68 7.19 -51.93 -0.37 0.31 16 29 H 0.06 1.32 7.40 -51.93 -0.38 0.93 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.77 6.21 -51.93 -0.32 1.45 16 32 H 0.04 0.86 7.71 -51.93 -0.40 0.46 16 33 H 0.27 7.33 6.09 -40.82 -0.25 7.08 16 34 H 0.41 6.72 8.46 -34.48 -0.29 6.43 16 35 H 0.16 1.67 7.60 -52.49 -0.40 1.27 16 36 H 0.16 1.38 7.61 -52.49 -0.40 0.98 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.16 2.58 7.59 -52.49 -0.40 2.18 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -31.65 356.98 -7.86 -39.51 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.46 Total: 5.79 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.19 Total: -18.07 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.68 Total: -43.37 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -2.63 Total: -49.74 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.08 Total: 17.99 kcal Atomic # 16 Polarization: 45.00 SS G_CDS: -0.61 Total: 44.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.65 -7.86 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277805704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.585 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds